UBERON:0003918: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0003918
|name=kidney mesenchyme
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|def="Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [G...") |
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Revision as of 17:19, 15 June 2012
| Name: | kidney mesenchyme |
|---|---|
| Definition: | "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074] |
| Synonyms: | "mesenchyme of kidney" EXACT [] |
| Comments: | check this |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme) |
|---|
Children
| is a: | UBERON:0003220 (metanephric mesenchyme) |
|---|---|
| develops from: | UBERON:0001231 (nephron tubule),UBERON:0002113 (kidney) |
| part of: | UBERON:0010536 (nephron progenitor) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003918 (kidney mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.73e-86 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_47375b4206321399a7eabf541c979389 | p4@PAX2 |
| 1.73e-86 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_47375b4206321399a7eabf541c979389 | p4@PAX2 |
| 2.28e-80 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_7487e1bf870588c2e823e28a1e56c31b | p6@Hoxd8 |
| 2.28e-80 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_7487e1bf870588c2e823e28a1e56c31b | p6@Hoxd8 |
| 3.64e-74 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_0926a0326aa298d170d847191019b2c4 | p8@Hoxd8 |
| 3.64e-74 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_0926a0326aa298d170d847191019b2c4 | p8@Hoxd8 |
| 5.03e-73 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_fb784900942bb2c1d0bb0e944049c6d2 | p3@PAX2 |
| 5.03e-73 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_fb784900942bb2c1d0bb0e944049c6d2 | p3@PAX2 |
| 3.13e-70 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_91e3b9d6458d90d5fff92e4c05f0465f | p@chr2:693380..693398, + |
| 3.13e-70 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_91e3b9d6458d90d5fff92e4c05f0465f | p@chr2:693380..693398, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_3b9d66196ab5b392345d753bd653bd5f | p@chr19:44824107..44824111, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_3b9d66196ab5b392345d753bd653bd5f | p@chr19:44824107..44824111, - |
| 6.57e-66 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b67386bb613167ebff1d1885ce5a28be | p7@HOXA10 |
| 6.57e-66 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b67386bb613167ebff1d1885ce5a28be | p7@HOXA10 |
| 2.27e-64 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_7f160fa8cc0c8b90a74259ad6267ca28 | p2@PAX2 |
| 2.27e-64 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_7f160fa8cc0c8b90a74259ad6267ca28 | p2@PAX2 |
| 2.61e-63 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_3e1b086fc6cf4294de690dcf886874cc | p4@AIF1L |
| 2.61e-63 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_3e1b086fc6cf4294de690dcf886874cc | p4@AIF1L |
| 9.07e-63 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_5bc7a59ba06871a82179a4ee52b66ebe | p1@ENST00000418041, p1@ENST00000443104 |
| 9.07e-63 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_5bc7a59ba06871a82179a4ee52b66ebe | p1@ENST00000418041, p1@ENST00000443104 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_c3546a16162ae9e441c8025a4fdb2e1c | p@chr10:3291561..3291580, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_c3546a16162ae9e441c8025a4fdb2e1c | p@chr10:3291561..3291580, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_5f1aecd6730125bf17da97851188a623 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_5f1aecd6730125bf17da97851188a623 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_5f1aecd6730125bf17da97851188a623 | p@chr19:44899724..44899728, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_5f1aecd6730125bf17da97851188a623 | p@chr19:44899724..44899728, + |
| 4.78e-61 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_ef277bf17844bdfd1d5c356fdfd296c8 | p4@MEGF11 |
| 4.78e-61 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_ef277bf17844bdfd1d5c356fdfd296c8 | p4@MEGF11 |
| 1.07e-59 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_4030365b9fa7963a440c3ea6298c86b3 | p@chr8:107148422..107148433, + |
| 1.07e-59 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_4030365b9fa7963a440c3ea6298c86b3 | p@chr8:107148422..107148433, + |
| 6.23e-58 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_7964e1ab3c9f9e1de0cdf150c60ebb29 | p@chr10:50689167..50689171, + |
| 6.23e-58 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_7964e1ab3c9f9e1de0cdf150c60ebb29 | p@chr10:50689167..50689171, + |
| 8.0e-58 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_3ea92508d7894b64c29c68112b5cf7f6 | p@chr5:24755801..24755819, + |
| 8.0e-58 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_3ea92508d7894b64c29c68112b5cf7f6 | p@chr5:24755801..24755819, + |
| 1.03e-57 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_3d2f84c1c6c7b38f25e7d313365e8f33 | p@chr19:59532611..59532623, + |
| 1.03e-57 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_3d2f84c1c6c7b38f25e7d313365e8f33 | p@chr19:59532611..59532623, + |
| 2.2e-56 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_791d166e6b09f20455b40b23c1b0a03e | p1@ENSMUST00000154177 |
| 2.2e-56 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_791d166e6b09f20455b40b23c1b0a03e | p1@ENSMUST00000154177 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_ea500219202015148d1c653a7dea9593 | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_ea500219202015148d1c653a7dea9593 | p@chr8:118959620..118959632, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_ea500219202015148d1c653a7dea9593 | p4@Ros1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_ea500219202015148d1c653a7dea9593 | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_ea500219202015148d1c653a7dea9593 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_ea500219202015148d1c653a7dea9593 | p7@Steap2 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_ea500219202015148d1c653a7dea9593 | p7@Steap2 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_ea500219202015148d1c653a7dea9593 | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_ea500219202015148d1c653a7dea9593 | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_ea500219202015148d1c653a7dea9593 | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_ea500219202015148d1c653a7dea9593 | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_ea500219202015148d1c653a7dea9593 | p4@Ros1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_ea500219202015148d1c653a7dea9593 | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_ea500219202015148d1c653a7dea9593 | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_ea500219202015148d1c653a7dea9593 | p@chr19:17554168..17554181, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_ea500219202015148d1c653a7dea9593 | p@chr19:17554168..17554181, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_ea500219202015148d1c653a7dea9593 | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_ea500219202015148d1c653a7dea9593 | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_ea500219202015148d1c653a7dea9593 | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_ea500219202015148d1c653a7dea9593 | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_ea500219202015148d1c653a7dea9593 | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_ea500219202015148d1c653a7dea9593 | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_ea500219202015148d1c653a7dea9593 | p@chr8:118959620..118959632, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_ea500219202015148d1c653a7dea9593 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 1.76e-55 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d74624847e4daca5a45fd662851c42e9 | p@chr18:3456189..3456200, + |
| 1.76e-55 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d74624847e4daca5a45fd662851c42e9 | p@chr18:3456189..3456200, + |
| 3.07e-55 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_6951e17b4e03af2f0c4a6d9f29d01deb | p@chr9:119741711..119741743, - |
| 3.07e-55 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_6951e17b4e03af2f0c4a6d9f29d01deb | p@chr9:119741711..119741743, - |
| 6.17e-52 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_3137f4fbebd52e919395f6a6f2dc52d2 | p@chr11:75720190..75720216, - |
| 6.17e-52 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_3137f4fbebd52e919395f6a6f2dc52d2 | p@chr11:75720190..75720216, - |
| 6.97e-52 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_3456ce700dc9a3465c514bebc3de3fab | p3@2810008M24Rik |
| 6.97e-52 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_3456ce700dc9a3465c514bebc3de3fab | p3@2810008M24Rik |
| 1.64e-51 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_2581940a6ff29acaf81664307344572c | p1@ENSMUST00000143898 |
| 1.64e-51 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_2581940a6ff29acaf81664307344572c | p1@ENSMUST00000143898 |
| 6.24e-51 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_5b013a90773f5b33efda4069375f8e7b | p@chr7:7606139..7606151, - |
| 6.24e-51 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_5b013a90773f5b33efda4069375f8e7b | p@chr7:7606139..7606151, - |
| 1.67e-50 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_81260b65563f963554a860a12225c14c | p4@Pdzk1 |
| 1.67e-50 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_81260b65563f963554a860a12225c14c | p4@Pdzk1 |
| 2.31e-50 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_f35f477703584001ea5fede5fd3f861d | p8@Rgnef |
| 2.31e-50 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_f35f477703584001ea5fede5fd3f861d | p8@Rgnef |
| 2.36e-50 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_43acee035b86426c7587d02b07fe3bae | p5@Cldn8 |
| 2.36e-50 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_43acee035b86426c7587d02b07fe3bae | p5@Cldn8 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_b96bea444653fd73db42e35c963dd1e0 | p4@Nphs1 |
| 2.38e-50 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_b96bea444653fd73db42e35c963dd1e0 | p@chr3:154257229..154257241, - |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_b96bea444653fd73db42e35c963dd1e0 | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_b96bea444653fd73db42e35c963dd1e0 | p@chr3:154257229..154257241, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_b96bea444653fd73db42e35c963dd1e0 | p4@Nphs1 |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_b96bea444653fd73db42e35c963dd1e0 | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_b96bea444653fd73db42e35c963dd1e0 | p@chr10:12353875..12353921, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_b96bea444653fd73db42e35c963dd1e0 | p@chr10:12353875..12353921, - |
| 3.53e-50 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_08224165d89e538838e5e61906a81f0f | p@chr10:3291584..3291599, + |
| 3.53e-50 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_08224165d89e538838e5e61906a81f0f | p@chr10:3291584..3291599, + |
| 5.98e-50 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_5826ac824902782fc31b4792342fa7b6 | p9@Ppt2 |
| 5.98e-50 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_5826ac824902782fc31b4792342fa7b6 | p9@Ppt2 |
| 6.48e-50 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_89e2ba2b6e2aadbefdde72db1882326b | p5@Scp2 |
| 6.48e-50 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_89e2ba2b6e2aadbefdde72db1882326b | p5@Scp2 |
| 7.43e-50 | FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_13cbc6384d3447ca1350e783e3116fee | p7@Hoxd8 |
| 7.43e-50 | FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_13cbc6384d3447ca1350e783e3116fee | p7@Hoxd8 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_ef774d633c19e32f9831e9967b3f0d2f | p@chr6:83708841..83708859, + |
| 1.21e-49 | FFCP PHASE2:Mm9::chr7:86741766..86741778,-#_ef774d633c19e32f9831e9967b3f0d2f | p@chr7:86741766..86741778, - |
| 1.21e-49 | FFCP PHASE1:Mm9::chr2:124984656..124984673,+#_ef774d633c19e32f9831e9967b3f0d2f | p@chr2:124984656..124984673, + |
| 1.21e-49 | FFCP PHASE2:Mm9::chr10:127286959..127286970,+#_ef774d633c19e32f9831e9967b3f0d2f | p3@Rdh19 |
