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Revision as of 17:20, 15 June 2012

Name:otic capsule
Definition:"The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
EHDAA:4704
EHDAA2:0001333
EMAPA:17596
SCTID:361515007

VHOG:0000854
Synonyms: "otic capsule" EXACT [ZFA:0001500]
"otic capsule cartilage condensation" EXACT [EHDAA2:0001333]
"periotic capsule" RELATED [MA:0000252]
Comments:otic capsule goes to CS20 in EHDAA2, and until adult in ZFA

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000032(),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element)
part_of:UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ef0848008da7a18a37873e78b0320066p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_ef0848008da7a18a37873e78b0320066p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ef0848008da7a18a37873e78b0320066p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_ef0848008da7a18a37873e78b0320066p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_ef0848008da7a18a37873e78b0320066p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_ef0848008da7a18a37873e78b0320066p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_ef0848008da7a18a37873e78b0320066p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_ef0848008da7a18a37873e78b0320066p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_ef0848008da7a18a37873e78b0320066p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ef0848008da7a18a37873e78b0320066p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ef0848008da7a18a37873e78b0320066p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_ef0848008da7a18a37873e78b0320066p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ef0848008da7a18a37873e78b0320066p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_ef0848008da7a18a37873e78b0320066p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_ef0848008da7a18a37873e78b0320066p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ef0848008da7a18a37873e78b0320066p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_ef0848008da7a18a37873e78b0320066p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_ef0848008da7a18a37873e78b0320066p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_ef0848008da7a18a37873e78b0320066p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ef0848008da7a18a37873e78b0320066p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ef0848008da7a18a37873e78b0320066p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ef0848008da7a18a37873e78b0320066p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_ef0848008da7a18a37873e78b0320066p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ef0848008da7a18a37873e78b0320066p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ef0848008da7a18a37873e78b0320066p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ef0848008da7a18a37873e78b0320066p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ef0848008da7a18a37873e78b0320066p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ef0848008da7a18a37873e78b0320066p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_ef0848008da7a18a37873e78b0320066p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ef0848008da7a18a37873e78b0320066p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_ef0848008da7a18a37873e78b0320066p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_ef0848008da7a18a37873e78b0320066p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ef0848008da7a18a37873e78b0320066p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_ef0848008da7a18a37873e78b0320066p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459231..154459240, +

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