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Revision as of 17:26, 15 June 2012

Name:neurogenic placode
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_3a60b0cd6868b4b766bca2e34977f532p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_3a60b0cd6868b4b766bca2e34977f532p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_3a60b0cd6868b4b766bca2e34977f532p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_3a60b0cd6868b4b766bca2e34977f532p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_3a60b0cd6868b4b766bca2e34977f532p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_3a60b0cd6868b4b766bca2e34977f532p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_3a60b0cd6868b4b766bca2e34977f532p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_3a60b0cd6868b4b766bca2e34977f532p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_3a60b0cd6868b4b766bca2e34977f532p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_3a60b0cd6868b4b766bca2e34977f532p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_3a60b0cd6868b4b766bca2e34977f532p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_3a60b0cd6868b4b766bca2e34977f532p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_3a60b0cd6868b4b766bca2e34977f532p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_3a60b0cd6868b4b766bca2e34977f532p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_3a60b0cd6868b4b766bca2e34977f532p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_3a60b0cd6868b4b766bca2e34977f532p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_3a60b0cd6868b4b766bca2e34977f532p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_3a60b0cd6868b4b766bca2e34977f532p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_3a60b0cd6868b4b766bca2e34977f532p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_3a60b0cd6868b4b766bca2e34977f532p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_3a60b0cd6868b4b766bca2e34977f532p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_3a60b0cd6868b4b766bca2e34977f532p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_3a60b0cd6868b4b766bca2e34977f532p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_3a60b0cd6868b4b766bca2e34977f532p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_3a60b0cd6868b4b766bca2e34977f532p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_3a60b0cd6868b4b766bca2e34977f532p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_3a60b0cd6868b4b766bca2e34977f532p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_3a60b0cd6868b4b766bca2e34977f532p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_3a60b0cd6868b4b766bca2e34977f532p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_3a60b0cd6868b4b766bca2e34977f532p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_3a60b0cd6868b4b766bca2e34977f532p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_3a60b0cd6868b4b766bca2e34977f532p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_3a60b0cd6868b4b766bca2e34977f532p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_3a60b0cd6868b4b766bca2e34977f532p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_3a60b0cd6868b4b766bca2e34977f532p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_3a60b0cd6868b4b766bca2e34977f532p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_3a60b0cd6868b4b766bca2e34977f532p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_3a60b0cd6868b4b766bca2e34977f532p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmc1

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