UBERON:0001801: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball] | |def="The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball] | ||
|xref=FMA:58865;;MA:0002484;;MESH:A.09.371.060;;ncithesaurus:Anterior_Eye_Segment;;SCTID:280658001;;ZFA:0005566 | |xref=FMA:58865;;http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png;;MA:0002484;;MESH:A.09.371.060;;ncithesaurus:Anterior_Eye_Segment;;SCTID:280658001;;ZFA:0005566 | ||
|is_a=UBERON:0000063;;UBERON:0004121 | |is_a=UBERON:0000063;;UBERON:0004121 | ||
|synonym="anterior segment of eye" EXACT [];;"anterior segment of the eye" EXACT [];;"eye anterior segment" EXACT [];;"segmentum anterius (bulbus oculi)" EXACT [] | |synonym="anterior segment of eye" EXACT [];;"anterior segment of the eye" EXACT [];;"eye anterior segment" EXACT [];;"segmentum anterius (bulbus oculi)" EXACT [];;"segmentum anterius bulbi oculi" RELATED LATIN [Wikipedia:Anterior_segment_of_eyeball] | ||
|comment= | |comment= | ||
|alt_id=UBERON:FMA_58865-MA_0002484 | |alt_id=UBERON:FMA_58865-MA_0002484 | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001802 | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:59, 26 June 2012
| Name: | anterior segment of eyeball | ||
|---|---|---|---|
| Definition: | "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior segment of eye" EXACT [] "anterior segment of the eye" EXACT [] "eye anterior segment" EXACT [] "segmentum anterius (bulbus oculi)" EXACT [] "segmentum anterius bulbi oculi" RELATED LATIN [Wikipedia:Anterior_segment_of_eyeball] | ||
| Alt_id: | UBERON:FMA_58865-MA_0002484 | ||
| Subset: | vertebrate_core |
Cataract_in_human_eye.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000063(organ segment),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| part of: | UBERON:0000964 (cornea),UBERON:0000965 (lens of camera-type eye),UBERON:0001768 (uvea),UBERON:0005908 (conjunctival sac),UBERON:0011892 (anterior uvea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11526-119I5 (Corneal Epithelial Cells, donor1)
- 11527-119I6 (Keratocytes, donor1)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11532-120A2 (Trabecular Meshwork Cells, donor1)
- 11606-120I4 (Corneal Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001801 (anterior segment of eyeball), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.04e-57 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_00be5715f4d6ff9bdba2b1b154fd4a3c | p7@PTPRU |
| 2.04e-57 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_00be5715f4d6ff9bdba2b1b154fd4a3c | p7@PTPRU |
| 9.13e-57 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_c5510be2a7eaa7b357bbe0d0958ca367 | p@chr7:115723897..115723915, - |
| 9.13e-57 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_c5510be2a7eaa7b357bbe0d0958ca367 | p@chr7:115723897..115723915, - |
| 3.33e-53 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_50cac92d3de4bc2131eb2717fb319031 | p3@SIX6 |
| 3.33e-53 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_50cac92d3de4bc2131eb2717fb319031 | p3@SIX6 |
| 1.87e-50 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_96461a8e1724a57b1b0b373798e8fbd8 | p1@BC033145 |
| 1.87e-50 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_96461a8e1724a57b1b0b373798e8fbd8 | p1@BC033145 |
| 8.41e-50 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_6f63eb01de8c49891dc606d9d8fcc8af | p11@PAX6 |
| 8.41e-50 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_6f63eb01de8c49891dc606d9d8fcc8af | p11@PAX6 |
| 3.74e-49 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_69a138c8ba940c6883985ab5d1df20b9 | p1@ENST00000448923 |
| 3.74e-49 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_69a138c8ba940c6883985ab5d1df20b9 | p1@ENST00000448923 |
| 1.25e-45 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_a4abd715461c05d0e0af5895f77c94c1 | p@chr2:35680607..35680613, - |
| 1.25e-45 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_a4abd715461c05d0e0af5895f77c94c1 | p@chr2:35680607..35680613, - |
| 1.4e-45 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_e6d294bf5a7ffff5c376485bab98d1a9 | p@chr7:115723925..115723935, - |
| 1.4e-45 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_e6d294bf5a7ffff5c376485bab98d1a9 | p@chr7:115723925..115723935, - |
| 1.57e-45 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_f08d770810b435152d7278091490361a | p@chr7:131803806..131803815, + |
| 1.57e-45 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_f08d770810b435152d7278091490361a | p@chr7:131803806..131803815, + |
| 1.76e-45 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_64e7080127bad46c5a7cbffd2d8d8b7a | p@chr13:36052762..36052767, - |
| 1.76e-45 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_64e7080127bad46c5a7cbffd2d8d8b7a | p@chr13:36052762..36052767, - |
| 1.98e-45 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_7a36fabc9f7ddf98bf6c1ac1a0686f29 | p@chr16:58896129..58896134, - |
| 1.98e-45 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_7a36fabc9f7ddf98bf6c1ac1a0686f29 | p@chrX:106198807..106198826, - |
| 1.98e-45 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_7a36fabc9f7ddf98bf6c1ac1a0686f29 | p@chr16:58896129..58896134, - |
| 1.98e-45 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_7a36fabc9f7ddf98bf6c1ac1a0686f29 | p@chrX:106198807..106198826, - |
| 2.32e-43 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_9b57c6682c9578ab553998690c633ba2 | p10@NLGN1 |
| 2.32e-43 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_9b57c6682c9578ab553998690c633ba2 | p10@NLGN1 |
| 4.85e-43 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_14c6d845e8fb32c0b8d88d93f64cecad | p@chr13:36052713..36052724, - |
| 4.85e-43 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_14c6d845e8fb32c0b8d88d93f64cecad | p@chr13:36052713..36052724, - |
| 1.05e-40 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_a1000f6560627d9e6204476b5c572bec | p10@SIX3 |
| 1.05e-40 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_a1000f6560627d9e6204476b5c572bec | p10@SIX3 |
| 2.55e-40 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_cb089514fc3b2f1cfb4ee852ebc53171 | p2@SIX6 |
| 2.55e-40 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_cb089514fc3b2f1cfb4ee852ebc53171 | p2@SIX6 |
| 4.37e-39 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_c3f3864b7b2426da18d891186e1581a2 | p4@SIX6 |
| 4.37e-39 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_c3f3864b7b2426da18d891186e1581a2 | p4@SIX6 |
| 3.38e-38 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_0070223af1d16d2bc40c8885f3d4d39d | p@chr11:31667372..31667383, - |
| 3.38e-38 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_0070223af1d16d2bc40c8885f3d4d39d | p@chr11:31667372..31667383, - |
| 4.95e-38 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_366591cfbabccb981013ed692265eec7 | p2@RIPPLY1 |
| 4.95e-38 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_366591cfbabccb981013ed692265eec7 | p2@RIPPLY1 |
| 2.55e-36 | FFCP PHASE2:Hg19::chr14:60975883..60975911,+#_fff5a55e61220da90e45df9d236bd31c | p1@SIX6 |
| 2.55e-36 | FFCP PHASE1:Hg19::chr14:60975883..60975911,+#_fff5a55e61220da90e45df9d236bd31c | p1@SIX6 |
| 1.94e-35 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_127d0d875edeb89edfc54ce1cf7dd48c | p1@CLRN1 |
| 1.94e-35 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_127d0d875edeb89edfc54ce1cf7dd48c | p1@CLRN1 |
| 4.32e-34 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_5b575827223cf578c5d37ba8a65a64ee | p6@C8orf47 |
| 4.32e-34 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_5b575827223cf578c5d37ba8a65a64ee | p6@C8orf47 |
| 1.02e-33 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_1e9b58c88ab52b52335e0d151bad520d | p20@SHROOM3 |
| 1.02e-33 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_1e9b58c88ab52b52335e0d151bad520d | p20@SHROOM3 |
| 1.21e-32 | FFCP PHASE2:Hg19::chrX:106163626..106163638,+#_7bc0df318ec121d288e2ea913ff91e2b | p2@CLDN2 |
| 1.21e-32 | FFCP PHASE1:Hg19::chrX:106163626..106163638,+#_7bc0df318ec121d288e2ea913ff91e2b | p2@CLDN2 |
| 1.46e-32 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_b8003d09ee8ce8f3f2d67fd04f8fa16c | p1@MIR184 |
| 1.46e-32 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_b8003d09ee8ce8f3f2d67fd04f8fa16c | p1@MIR184 |
| 1.81e-32 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_bfcbe821a0b68ea138f6e222666d600f | p3@BC033145 |
| 1.81e-32 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_bfcbe821a0b68ea138f6e222666d600f | p@chr1:12416343..12416350, + |
| 1.81e-32 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_bfcbe821a0b68ea138f6e222666d600f | p3@BC033145 |
| 1.81e-32 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_bfcbe821a0b68ea138f6e222666d600f | p@chr12:97856211..97856221, + |
| 1.81e-32 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_bfcbe821a0b68ea138f6e222666d600f | p@chr1:12416343..12416350, + |
| 1.81e-32 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_bfcbe821a0b68ea138f6e222666d600f | p@chr12:97856211..97856221, + |
| 1.9e-32 | FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_cd4b6a5dcd56262ce2833c80d77c5249 | p5@SIX6 |
| 1.9e-32 | FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_cd4b6a5dcd56262ce2833c80d77c5249 | p5@SIX6 |
| 3.0e-32 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_8c038bea706f952743a96ec92e07dd44 | p1@ENST00000456467 |
| 3.0e-32 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_8c038bea706f952743a96ec92e07dd44 | p1@ENST00000456467 |
| 2.64e-31 | FFCP PHASE1:Hg19::chr11:31816236..31816261,-#_7bdea7a0eab1594a8541624a5922cf52 | p@chr11:31816236..31816261, - |
| 2.64e-31 | FFCP PHASE2:Hg19::chr11:31816236..31816261,-#_7bdea7a0eab1594a8541624a5922cf52 | p@chr11:31816236..31816261, - |
| 8.51e-30 | FFCP PHASE2:Hg19::chr8:99076509..99076530,+#_4fd6dd5ff5fa51e193b19d93777c69b2 | p4@C8orf47 |
| 8.51e-30 | FFCP PHASE1:Hg19::chr8:99076509..99076530,+#_4fd6dd5ff5fa51e193b19d93777c69b2 | p4@C8orf47 |
| 2.55e-29 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_9e16428346bbf81a43ad04988b22c0d8 | p3@CLRN1 |
| 2.55e-29 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_9e16428346bbf81a43ad04988b22c0d8 | p3@CLRN1 |
| 2.55e-29 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_9e16428346bbf81a43ad04988b22c0d8 | p@chr9:75848662..75848671, - |
| 2.55e-29 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_9e16428346bbf81a43ad04988b22c0d8 | p@chr9:75848662..75848671, - |
| 7.28e-29 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_ba876b0ed705e51ab400fd878f83bbf0 | p3@ENST00000437916 |
| 7.28e-29 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_ba876b0ed705e51ab400fd878f83bbf0 | p3@ENST00000437916 |
| 9.03e-29 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_340b70f5c94ac5635f752093d9336360 | p3@ENST00000505537 |
| 9.03e-29 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_340b70f5c94ac5635f752093d9336360 | p3@ENST00000505537 |
| 2.04e-28 | FFCP PHASE1:Hg19::chr11:31832549..31832562,-#_4a69b370dc04d23d884d5e98afedbe39 | p10@PAX6 |
| 2.04e-28 | FFCP PHASE2:Hg19::chr11:31832549..31832562,-#_4a69b370dc04d23d884d5e98afedbe39 | p10@PAX6 |
| 2.37e-28 | FFCP PHASE2:Hg19::chr2:192127430..192127443,+#_0d3b8abd670e3e77012b668fa262c372 | p10@MYO1B |
| 2.37e-28 | FFCP PHASE1:Hg19::chr2:192127430..192127443,+#_0d3b8abd670e3e77012b668fa262c372 | p10@MYO1B |
| 1.2e-27 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_76cc1280c95fce5ac776cd61cac78c5a | p@chr2:66670833..66670853, + |
| 1.2e-27 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_76cc1280c95fce5ac776cd61cac78c5a | p@chr2:66670833..66670853, + |
| 1.67e-27 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_1674940aaca4c962d03b721f6b8cf64c | p1@OPTC |
| 1.67e-27 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_1674940aaca4c962d03b721f6b8cf64c | p1@OPTC |
| 2.88e-27 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_bb11ded8283afce01894ff6847bb14e4 | p8@NBEA |
| 2.88e-27 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_bb11ded8283afce01894ff6847bb14e4 | p8@NBEA |
| 4.54e-27 | FFCP PHASE2:Hg19::chr13:36052779..36052793,-#_2693d0ce9a0f47d15dec3619dba654af | p@chr13:36052779..36052793, - |
| 4.54e-27 | FFCP PHASE1:Hg19::chr13:36052779..36052793,-#_2693d0ce9a0f47d15dec3619dba654af | p@chr13:36052779..36052793, - |
| 5.89e-27 | FFCP PHASE2:Hg19::chrX:110038990..110038997,-#_db26227a0ee88fe55dbbc3da9aa7a3c6 | p3@CHRDL1 |
| 5.89e-27 | FFCP PHASE1:Hg19::chrX:110038990..110038997,-#_db26227a0ee88fe55dbbc3da9aa7a3c6 | p3@CHRDL1 |
| 7.46e-27 | FFCP PHASE1:Hg19::chr11:31825214..31825226,-#_7636d67e1fec2282258657b7e6b937d4 | p14@PAX6 |
| 7.46e-27 | FFCP PHASE2:Hg19::chr11:31825214..31825226,-#_7636d67e1fec2282258657b7e6b937d4 | p14@PAX6 |
| 1.12e-26 | FFCP PHASE2:Hg19::chr14:62037209..62037228,+#_a5d038e836768597dbfe62c857c3c33e | p4@FLJ22447 |
| 1.12e-26 | FFCP PHASE1:Hg19::chr14:62037209..62037228,+#_a5d038e836768597dbfe62c857c3c33e | p4@FLJ22447 |
| 1.36e-26 | FFCP PHASE1:Hg19::chrX:136646637..136646649,-#_43702df4e289838110084a70896e2d26 | p1@ENST00000442841 |
| 1.36e-26 | FFCP PHASE2:Hg19::chrX:136646637..136646649,-#_43702df4e289838110084a70896e2d26 | p1@ENST00000442841 |
| 2.52e-26 | FFCP PHASE2:Hg19::chr2:45165994..45166012,-#_edb9d87b030a00dcda6ce065cd4b71ac | p1@ENST00000444871 |
| 2.52e-26 | FFCP PHASE1:Hg19::chr2:45165994..45166012,-#_edb9d87b030a00dcda6ce065cd4b71ac | p1@ENST00000444871 |
| 3.04e-26 | FFCP PHASE2:Hg19::chr11:31816304..31816311,-#_e9ae00fc5d0df069100542733f442af3 | p@chr11:31816304..31816311, - |
| 3.04e-26 | FFCP PHASE1:Hg19::chr11:31816304..31816311,-#_e9ae00fc5d0df069100542733f442af3 | p@chr11:31816304..31816311, - |
| 3.17e-26 | FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_c42435b6d1163b6371e23dc3dc42c1a2 | p@chr11:31671561..31671580, + |
| 3.17e-26 | FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_c42435b6d1163b6371e23dc3dc42c1a2 | p@chr11:31671561..31671580, + |
| 3.76e-26 | FFCP PHASE1:Hg19::chr16:80552480..80552487,-#_7c593e8ea676e7e035a10d558627b8cb | p@chr16:80552480..80552487, - |
| 3.76e-26 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_7c593e8ea676e7e035a10d558627b8cb | p5@SFRP1 |
