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UBERON:0002186: Difference between revisions

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|has_quality=
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|part_of=UBERON:0002048;;UBERON:0007196;;UBERON:0010368
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
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Latest revision as of 13:31, 27 June 2012

Name:bronchiole
Definition:"the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
Xrefs:
links:

BTO:0002375
EHDAA:8171
EHDAA:8183
EHDAA:8199
EHDAA:8221
FMA:7410
[ Alveoli_diagram.png Alveoli_diagram.png]
[ 200px-Alveoli_diagram.png 200px-Alveoli_diagram.png]
MA:0000422
ncithesaurus:Bronchiole
OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA
SCTID:278982001

VHOG:0000675
Synonyms: "bronchiolus" RELATED [BTO:0002375]
"lobular bronchiole" EXACT [FMA:7410]
Alt_id: UBERON:FMA_7410-MA_0000422
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000072(segment of respiratory tract)
part_of:UBERON:0002048(lung),UBERON:0007196(tracheobronchial tree),UBERON:0010368(pulmonary lobule)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
  • 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
  • 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002186 (bronchiole), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data