UBERON:0003894: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0001041 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000925 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:34, 27 June 2012
| Name: | liver primordium | ||
|---|---|---|---|
| Definition: | "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755] | ||
| Xrefs: |
| ||
| Synonyms: |
"embryological hepatic plate" EXACT [UBERON:cjm] "hepatic plate" RELATED [EHDAA2:0000744] "liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124] "primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver] | ||
| Comments: | Todo - check hepatic plate; check syns | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium) |
|---|---|
| develops_from: | UBERON:0001041(foregut) |
| part_of: | UBERON:0000925(endoderm) |
Children
| develops from: | UBERON:0002107 (liver),UBERON:0008835 (hepatic diverticulum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003894 (liver primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-72 | FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97 | p@chr5:90897694..90897705, + |
| 1.22e-72 | FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97 | p@chr5:90897694..90897705, + |
| 2.2e-72 | FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5a | p@chr19:25169885..25169900, + |
| 2.2e-72 | FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5a | p@chr19:25169885..25169900, + |
| 1.13e-71 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183 | p5@NR1H4 |
| 1.13e-71 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183 | p5@NR1H4 |
| 2.32e-71 | FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366 | p7@TOP1MT |
| 2.32e-71 | FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366 | p58@APOB |
| 2.32e-71 | FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366 | p7@TOP1MT |
| 2.32e-71 | FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366 | p58@APOB |
| 5.51e-71 | FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edc | p6@Insc |
| 5.51e-71 | FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edc | p6@Insc |
| 1.7e-70 | FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25dd | p2@uc009nzu.1 |
| 1.7e-70 | FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25dd | p2@uc009nzu.1 |
| 1.28e-68 | FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061 | p5@Bhmt |
| 1.28e-68 | FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061 | p5@Bhmt |
| 2.27e-68 | FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235 | p19@SPATS2L |
| 2.27e-68 | FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235 | p19@SPATS2L |
| 2.72e-68 | FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6 | p@chr1:162917234..162917248, + |
| 2.72e-68 | FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6 | p@chr1:162917234..162917248, + |
| 3.5e-68 | FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231dd | p1@Rtp3 |
| 3.5e-68 | FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231dd | p1@Rtp3 |
| 2.47e-67 | FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806f | p2@Rtp3 |
| 2.47e-67 | FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806f | p2@Rtp3 |
| 2.47e-67 | FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806f | p@chr7:112744083..112744109, - |
| 2.47e-67 | FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806f | p@chr7:112744083..112744109, - |
| 6.55e-67 | FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927 | p@chr13:23928766..23928779, + |
| 6.55e-67 | FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927 | p@chr13:23928766..23928779, + |
| 7.85e-67 | FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77b | p3@Blvrb |
| 7.85e-67 | FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77b | p3@Blvrb |
| 1.58e-66 | FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445a | p@chr16:22894900..22894910, + |
| 1.58e-66 | FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445a | p@chr2:10041210..10041222, - |
| 1.58e-66 | FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445a | p@chr12:105004018..105004046, - |
| 1.58e-66 | FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445a | p@chr16:22898981..22898988, - |
| 1.58e-66 | FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445a | p@chr6:128436166..128436185, - |
| 1.58e-66 | FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445a | p@chr16:22894900..22894910, + |
| 1.58e-66 | FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445a | p@chr6:128436166..128436185, - |
| 1.58e-66 | FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445a | p@chr2:10041210..10041222, - |
| 1.58e-66 | FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445a | p@chr12:105004018..105004046, - |
| 1.58e-66 | FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445a | p@chr16:22898981..22898988, - |
| 1.39e-65 | FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115f | p18@IKBKG |
| 1.39e-65 | FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115f | p18@IKBKG |
| 2.18e-65 | FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9 | p3@ITIH2 |
| 2.18e-65 | FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9 | p3@ITIH2 |
| 3.98e-65 | FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792 | p@chr2:97216132..97216143, + |
| 3.98e-65 | FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792 | p@chr2:97216132..97216143, + |
| 1.17e-64 | FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7cce | p@chr1:173155793..173155841, + |
| 1.17e-64 | FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7cce | p@chr1:173155793..173155841, + |
| 1.34e-64 | FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3a | p@chr17:12588483..12588503, + |
| 1.34e-64 | FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3a | p@chr17:12588483..12588503, + |
| 1.38e-64 | FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6 | p@chr17:12584645..12584657, + |
| 1.38e-64 | FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6 | p@chr17:12584645..12584657, + |
| 1.62e-64 | FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61e | p@chr1:166179426..166179437, + |
| 1.62e-64 | FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61e | p@chr1:166179426..166179437, + |
| 1.68e-64 | FFCP PHASE1:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169ef | p@chr8:34917332..34917357, - |
| 1.68e-64 | FFCP PHASE2:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169ef | p@chr8:34917332..34917357, - |
| 4.38e-64 | FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53d | p@chr19:38191263..38191291, - |
| 4.38e-64 | FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53d | p@chr19:38191263..38191291, - |
| 9.3e-64 | FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708 | p8@Insc |
| 9.3e-64 | FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708 | p8@Insc |
| 1.1e-63 | FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291f | p@chr5:90893974..90893978, + |
| 1.1e-63 | FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291f | p@chr5:90893974..90893978, + |
| 1.7e-63 | FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176 | p1@uc009nzu.1 |
| 1.7e-63 | FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176 | p1@uc009nzu.1 |
| 1.72e-63 | FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p@chr2:21239379..21239390, - |
| 1.72e-63 | FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p6@FOXA2 |
| 1.72e-63 | FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p56@APOB |
| 1.72e-63 | FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p9@MAT1A |
| 1.72e-63 | FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p@chr2:21239379..21239390, - |
| 1.72e-63 | FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p1@ENST00000421143 |
| 1.72e-63 | FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p1@ENST00000421143 |
| 1.72e-63 | FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p@chr2:21258509..21258518, - |
| 1.72e-63 | FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p9@MAT1A |
| 1.72e-63 | FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p56@APOB |
| 1.72e-63 | FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p@chr2:21258509..21258518, - |
| 1.72e-63 | FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7 | p6@FOXA2 |
| 1.85e-63 | FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17 | p3@Klkb1 |
| 1.85e-63 | FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17 | p3@Klkb1 |
| 2.02e-63 | FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9 | p@chr1:230846000..230846009, - |
| 2.02e-63 | FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9 | p@chr3:57191661..57191672, - |
| 2.02e-63 | FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9 | p35@SERPINA1 |
| 2.02e-63 | FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9 | p35@SERPINA1 |
| 2.02e-63 | FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9 | p@chr1:230846000..230846009, - |
| 2.02e-63 | FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9 | p@chr3:57191661..57191672, - |
| 2.18e-63 | FFCP PHASE2:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516e | p@chr17:12583153..12583171, + |
| 2.18e-63 | FFCP PHASE1:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516e | p@chr17:12583153..12583171, + |
| 2.2e-63 | FFCP PHASE2:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94c | p@chr3:82814412..82814431, + |
| 2.2e-63 | FFCP PHASE1:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94c | p@chr3:82814412..82814431, + |
| 3.67e-63 | FFCP PHASE1:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031 | p3@Fam47e |
| 3.67e-63 | FFCP PHASE2:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031 | p3@Fam47e |
| 3.85e-63 | FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2c | p4@SEC16B |
| 3.85e-63 | FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2c | p4@SEC16B |
| 5.17e-63 | FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr16:23449901..23449906, - |
| 5.17e-63 | FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr3:82835513..82835525, + |
| 5.17e-63 | FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr8:92849825..92849837, - |
| 5.17e-63 | FFCP PHASE2:Mm9::chr3:82835513..82835525,+#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr3:82835513..82835525, + |
| 5.17e-63 | FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr8:92849825..92849837, - |
| 5.17e-63 | FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr16:22895330..22895339, - |
| 5.17e-63 | FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr15:77605636..77605639, + |
| 5.17e-63 | FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203cc | p@chr15:77605636..77605639, + |
