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MCL coexpression mm9:113: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.031452017443664,0,0,0,0,0,0,0,0,0.052188704109448,0.0620577069359474,0,0,0,0,0,0.0617533076901792,0.0342892623174831,0.0578074284787346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20018311764962,0.151949772756791,0,0,0,0,0.119105981026165,0.163608743054207,0.0973644655708927,0.182264238536694,0.276619371459082,0.0819907263755358,0.172230290669061,0,0,0,0,0,0,0,0.0609639314262262,0.0285860945550467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0828894264954325,0.0990616481385928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0646640766951323,0.0914641362800683,0,0,0,0,0,0,0,0,0,0,0,0.215543090236368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354884955343103,0,0.116651858992906,0.250304078488806,0.234544307802584,0.378537703726113,0.444457245620157,0.454106839138759,0.534431613603978,0.545881740137176,0.660775581993314,0.609555088167023,0.594852798685886,0.6365478144929,0,0,0,0,0,0,0,0,0,0.513085342652956,0.453517235932598,0.517404685814234,0.486038968127383,0.374778587894724,0.399810008829701,0.371076178555103,0.371245906776716,0.372806586713801,0.317207088631582,0,0,0,0,0,0,0,0,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0242538736058389,0,0.0476191773904887,0,0,0.0467855320320486,0,0.0709519923534245,0,0,0.0390607415003592,0.0352754493378881,0.0729583017401753,0.101427320830301,0.0553034373508932,0,0.0434182546741581,0.0408018333703219,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.031452017443664,0,0,0,0,0,0,0,0,0.052188704109448,0.0620577069359474,0,0,0,0,0,0.0617533076901792,0.0342892623174831,0.0578074284787346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20018311764962,0.151949772756791,0,0,0,0,0.119105981026165,0.163608743054207,0.0973644655708927,0.182264238536694,0.276619371459082,0.0819907263755358,0.172230290669061,0,0,0,0,0,0,0,0.0609639314262262,0.0285860945550467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0828894264954325,0.0990616481385928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0646640766951323,0.0914641362800683,0,0,0,0,0,0,0,0,0,0,0,0.215543090236368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354884955343103,0,0.116651858992906,0.250304078488806,0.234544307802584,0.378537703726113,0.444457245620157,0.454106839138759,0.534431613603978,0.545881740137176,0.660775581993314,0.609555088167023,0.594852798685886,0.6365478144929,0,0,0,0,0,0,0,0,0,0.513085342652956,0.453517235932598,0.517404685814234,0.486038968127383,0.374778587894724,0.399810008829701,0.371076178555103,0.371245906776716,0.372806586713801,0.317207088631582,0,0,0,0,0,0,0,0,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0242538736058389,0,0.0476191773904887,0,0,0.0467855320320486,0,0.0709519923534245,0,0,0.0390607415003592,0.0352754493378881,0.0729583017401753,0.101427320830301,0.0553034373508932,0,0.0434182546741581,0.0408018333703219,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002021!9.33e-17!10;UBERON:0000411!9.33e-17!10;UBERON:0001950!9.33e-17!10;UBERON:0000073!4.50e-16!54;UBERON:0001049!1.11e-15!52;UBERON:0005068!1.11e-15!52;UBERON:0006241!1.11e-15!52;UBERON:0007135!1.11e-15!52;UBERON:0000955!1.76e-15!47;UBERON:0006238!1.76e-15!47;UBERON:0002616!1.95e-14!46;UBERON:0000064!1.99e-13!99;UBERON:0002346!2.02e-13!64;UBERON:0003075!2.02e-13!64;UBERON:0007284!2.02e-13!64;UBERON:0000956!6.66e-13!21;UBERON:0001869!6.66e-13!21;UBERON:0000203!6.66e-13!21;UBERON:0002020!1.13e-12!34;UBERON:0003528!1.26e-12!29;UBERON:0002791!1.26e-12!29;UBERON:0001893!1.26e-12!29;UBERON:0002619!1.57e-12!17;UBERON:0001017!5.80e-12!73;UBERON:0003080!1.48e-11!40;UBERON:0001016!1.97e-11!75;UBERON:0010371!8.19e-11!73;UBERON:0002370!1.19e-10!23;UBERON:0000974!1.19e-10!23;UBERON:0004807!1.19e-10!23;UBERON:0005058!1.19e-10!23;UBERON:0003351!1.19e-10!23;UBERON:0009113!1.19e-10!23;UBERON:0003295!1.19e-10!23;UBERON:0009722!1.19e-10!23;UBERON:0005562!1.19e-10!23;UBERON:0007690!1.19e-10!23;UBERON:0002780!1.23e-10!39;UBERON:0001890!1.23e-10!39;UBERON:0006240!1.23e-10!39;UBERON:0003056!2.00e-10!49;UBERON:0000063!2.06e-10!35;UBERON:0006562!4.67e-10!24;UBERON:0003408!4.67e-10!24;UBERON:0001557!4.67e-10!24;UBERON:0001042!4.67e-10!24;UBERON:0008814!4.67e-10!24;UBERON:0009145!4.67e-10!24;UBERON:0004121!8.24e-09!95;UBERON:0000924!8.24e-09!95;UBERON:0006601!8.24e-09!95;UBERON:0000072!1.51e-08!27;UBERON:0004177!1.01e-07!29;UBERON:0005057!1.01e-07!29;UBERON:0007811!2.19e-07!36;UBERON:0010314!4.54e-07!92
}}
}}

Revision as of 16:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:122115711..122115720,+p7@Ppm1h
Mm9::chr11:31924695..31924708,+p@chr11:31924695..31924708
+
Mm9::chr11:31924712..31924739,+p@chr11:31924712..31924739
+
Mm9::chr11:31924772..31924800,+p@chr11:31924772..31924800
+
Mm9::chr11:31924848..31924866,+p@chr11:31924848..31924866
+
Mm9::chr11:31924868..31924886,+p@chr11:31924868..31924886
+
Mm9::chr11:31931173..31931186,+p@chr11:31931173..31931186
+
Mm9::chr11:46052305..46052309,-p@chr11:46052305..46052309
-
Mm9::chr11:58660655..58660728,+p1@LOC100502966
Mm9::chr11:88922011..88922113,-p1@Dgke
Mm9::chr11:97847698..97847786,-p1@Plxdc1
Mm9::chr13:102464468..102464567,-p2@Pik3r1
Mm9::chr15:99065696..99065700,+p@chr15:99065696..99065700
+
Mm9::chr16:55934958..55934981,-p2@Cep97
Mm9::chr17:34767458..34767474,+p@chr17:34767458..34767474
+
Mm9::chr17:34768037..34768092,+p3@Prrt1
Mm9::chr17:51951383..51951409,-p19@Satb1
Mm9::chr17:51992479..51992486,+p@chr17:51992479..51992486
+
Mm9::chr17:51998921..51998922,+p@chr17:51998921..51998922
+
Mm9::chr18:33118218..33118231,+p@chr18:33118218..33118231
+
Mm9::chr18:33154628..33154632,+p@chr18:33154628..33154632
+
Mm9::chr18:33167345..33167361,+p@chr18:33167345..33167361
+
Mm9::chr1:138043126..138043128,+p@chr1:138043126..138043128
+
Mm9::chr1:138043229..138043242,+p@chr1:138043229..138043242
+
Mm9::chr2:117123888..117123931,-p@chr2:117123888..117123931
-
Mm9::chr3:9799352..9799376,-p@chr3:9799352..9799376
-
Mm9::chr4:32951575..32951591,-p3@Ankrd6
Mm9::chr5:107788625..107788637,+p3@Brdt
Mm9::chr5:124637012..124637069,-p3@Pitpnm2
Mm9::chr6:142807025..142807029,-p@chr6:142807025..142807029
-
Mm9::chr6:142832348..142832363,-p@chr6:142832348..142832363
-
Mm9::chr6:8459783..8459794,+p7@Glcci1
Mm9::chr6:8459857..8459875,+p4@Glcci1
Mm9::chr7:109082467..109082540,+p2@Numa1
Mm9::chr7:129481109..129481121,+p@chr7:129481109..129481121
+
Mm9::chr7:129509590..129509601,+p@chr7:129509590..129509601
+
Mm9::chr7:129509653..129509669,+p@chr7:129509653..129509669
+
Mm9::chr7:129510049..129510072,+p@chr7:129510049..129510072
+
Mm9::chr7:129510086..129510101,+p@chr7:129510086..129510101
+
Mm9::chr7:129520823..129520852,+p@chr7:129520823..129520852
+
Mm9::chr7:129520917..129520931,+p@chr7:129520917..129520931
+
Mm9::chr8:75212285..75212296,+p@chr8:75212285..75212296
+
Mm9::chr8:75212354..75212365,+p@chr8:75212354..75212365
+
Mm9::chr8:75212378..75212397,+p@chr8:75212378..75212397
+
Mm9::chr9:111976372..111976383,-p@chr9:111976372..111976383
-
Mm9::chr9:111990251..111990269,-p@chr9:111990251..111990269
-
Mm9::chr9:111995138..111995153,-p@chr9:111995138..111995153
-
Mm9::chr9:111997630..111997643,-p@chr9:111997630..111997643
-
Mm9::chr9:112000170..112000219,-p@chr9:112000170..112000219
-
Mm9::chr9:112000249..112000259,-p@chr9:112000249..112000259
-
Mm9::chr9:112000325..112000340,-p@chr9:112000325..112000340
-
Mm9::chr9:112000473..112000482,-p@chr9:112000473..112000482
-
Mm9::chr9:112000507..112000516,-p@chr9:112000507..112000516
-
Mm9::chr9:112000575..112000589,-p@chr9:112000575..112000589
-
Mm9::chr9:112001705..112001729,-p@chr9:112001705..112001729
-
Mm9::chr9:112001739..112001753,-p@chr9:112001739..112001753
-
Mm9::chr9:112001782..112001793,-p@chr9:112001782..112001793
-
Mm9::chr9:112001830..112001842,-p@chr9:112001830..112001842
-
Mm9::chr9:112001961..112001972,-p@chr9:112001961..112001972
-
Mm9::chr9:112002495..112002510,-p@chr9:112002495..112002510
-
Mm9::chr9:112007466..112007470,-p@chr9:112007466..112007470
-
Mm9::chr9:112010640..112010658,-p@chr9:112010640..112010658
-
Mm9::chr9:112016368..112016375,-p@chr9:112016368..112016375
-
Mm9::chr9:112016456..112016468,-p@chr9:112016456..112016468
-
Mm9::chr9:112022678..112022692,-p@chr9:112022678..112022692
-
Mm9::chr9:112023087..112023093,-p@chr9:112023087..112023093
-
Mm9::chr9:112023837..112023850,-p@chr9:112023837..112023850
-
Mm9::chr9:112023877..112023888,-p@chr9:112023877..112023888
-
Mm9::chr9:112026857..112026885,-p@chr9:112026857..112026885
-
Mm9::chr9:112026916..112026928,-p@chr9:112026916..112026928
-
Mm9::chr9:112027266..112027276,-p@chr9:112027266..112027276
-
Mm9::chr9:112027328..112027337,-p@chr9:112027328..112027337
-
Mm9::chr9:112029309..112029312,-p@chr9:112029309..112029312
-
Mm9::chr9:112041570..112041581,-p@chr9:112041570..112041581
-
Mm9::chr9:112041848..112041869,-p@chr9:112041848..112041869
-
Mm9::chr9:112043055..112043058,-p@chr9:112043055..112043058
-
Mm9::chr9:112043828..112043832,-p@chr9:112043828..112043832
-
Mm9::chr9:112043901..112043905,-p@chr9:112043901..112043905
-
Mm9::chr9:112058510..112058526,-p@chr9:112058510..112058526
-
Mm9::chr9:112058591..112058637,-p@chr9:112058591..112058637
-
Mm9::chr9:112058717..112058735,-p@chr9:112058717..112058735
-
Mm9::chr9:112058965..112058977,-p@chr9:112058965..112058977
-
Mm9::chr9:112059883..112059887,-p@chr9:112059883..112059887
-
Mm9::chr9:112062765..112062777,-p@chr9:112062765..112062777
-
Mm9::chr9:112062960..112062971,-p@chr9:112062960..112062971
-
Mm9::chr9:112063185..112063192,-p@chr9:112063185..112063192
-
Mm9::chr9:112066800..112066813,-p@chr9:112066800..112066813
-
Mm9::chr9:112066855..112066869,-p@chr9:112066855..112066869
-
Mm9::chr9:112067047..112067063,-p@chr9:112067047..112067063
-
Mm9::chr9:112067580..112067585,-p@chr9:112067580..112067585
-
Mm9::chr9:112069125..112069159,-p@chr9:112069125..112069159
-
Mm9::chr9:112069190..112069206,-p@chr9:112069190..112069206
-
Mm9::chr9:112074981..112074991,-p@chr9:112074981..112074991
-
Mm9::chr9:112102410..112102419,-p@chr9:112102410..112102419
-
Mm9::chr9:112102521..112102532,-p@chr9:112102521..112102532
-
Mm9::chr9:112114255..112114257,-p@chr9:112114255..112114257
-
Mm9::chr9:112119048..112119067,-p@chr9:112119048..112119067
-
Mm9::chr9:112129709..112129721,-p@chr9:112129709..112129721
-
Mm9::chr9:112132489..112132500,-p@chr9:112132489..112132500
-
Mm9::chr9:112133673..112133688,-p@chr9:112133673..112133688
-
Mm9::chr9:112134953..112134964,-p17@Arpp21
Mm9::chr9:112135816..112135827,-p15@Arpp21
Mm9::chr9:112135883..112135916,-p14@Arpp21
Mm9::chr9:112136055..112136074,-p16@Arpp21
Mm9::chr9:112137388..112137407,-p9@Arpp21
Mm9::chr9:94569314..94569331,+p@chr9:94569314..94569331
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
occipital lobe9.33e-1710
visual cortex9.33e-1710
neocortex9.33e-1710
regional part of nervous system4.50e-1654
neural tube1.11e-1552
neural rod1.11e-1552
future spinal cord1.11e-1552
neural keel1.11e-1552
brain1.76e-1547
future brain1.76e-1547
regional part of brain1.95e-1446
organ part1.99e-1399
neurectoderm2.02e-1364
neural plate2.02e-1364
presumptive neural plate2.02e-1364
cerebral cortex6.66e-1321
cerebral hemisphere6.66e-1321
pallium6.66e-1321
gray matter1.13e-1234
brain grey matter1.26e-1229
regional part of telencephalon1.26e-1229
telencephalon1.26e-1229
regional part of cerebral cortex1.57e-1217
central nervous system5.80e-1273
anterior neural tube1.48e-1140
nervous system1.97e-1175
ecto-epithelium8.19e-1173
thymus1.19e-1023
neck1.19e-1023
respiratory system epithelium1.19e-1023
hemolymphoid system gland1.19e-1023
pharyngeal epithelium1.19e-1023
thymic region1.19e-1023
pharyngeal gland1.19e-1023
entire pharyngeal arch endoderm1.19e-1023
thymus primordium1.19e-1023
early pharyngeal endoderm1.19e-1023
regional part of forebrain1.23e-1039
forebrain1.23e-1039
future forebrain1.23e-1039
pre-chordal neural plate2.00e-1049
organ segment2.06e-1035
pharynx4.67e-1024
gland of gut4.67e-1024
upper respiratory tract4.67e-1024
chordate pharynx4.67e-1024
pharyngeal arch system4.67e-1024
pharyngeal region of foregut4.67e-1024
ectoderm-derived structure8.24e-0995
ectoderm8.24e-0995
presumptive ectoderm8.24e-0995
segment of respiratory tract1.51e-0827
hemopoietic organ1.01e-0729
immune organ1.01e-0729
craniocervical region2.19e-0736
structure with developmental contribution from neural crest4.54e-0792


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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