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|coexpression_dpi_cluster_scores_median=0.294846839931576,0,0,0,-0.0369370963453219,-0.00323812112682624,0,0,0,-0.0369370963453219,-0.00261823310098485,-0.0202710336620291,0,0,-0.0369370963453219,0,-0.0369370963453219,0,-0.0369370963453219,-0.0369370963453219,0.259645896973143,0,0,0,-0.0369370963453219,0,0,0,0,0,-0.0369370963453219,0,-0.0369370963453219,-0.0369370963453219,-0.0369370963453219,0,0,-0.0369370963453219,-0.0369370963453219,0,0,-0.0369370963453219,0,-0.011187800482476,-0.0159691084609007,0,0.059798141392627,0.635245079835789,0.548903199304265,0.372094891059197,0.311478974606717,0.42190993325844,-0.0369370963453219,0,-0.0369370963453219,0,0,0.0679869622572648,0.43575208194815,0.511235405376978,0.611993205395513,0.0633650746208235,0,0,-0.0369370963453219,0,0.835357459325175,1.04412118511182,0.359492786409444,0.444954592008576,0.281991593647068,1.0060213779873,0.868395343135975,0.221044652475595,0.382441870250987,0.36331738275905,0.683362391663869,0.814291721660672,0.814605266356349,0.411620989684397,0.488017403572414,0.48906556937507,0.932156624640465,0.754636418706044,0.712677771844715,0.712464920788248,0.661046734270472,0.417840182376512,0.169567910975632,0.0316393102377815,0,0,0.054392664277534,0,0,0,0,0,0,0,0.323872700473358,0,0,-0.0369370963453219,0.0425544574333691,0,0,0.0234784353458152,-0.0369370963453219,0,0.0131315716859029,0,0.008124093603417,0.0202758601755695,0,0,0,-0.00761034756080205,-0.0369370963453219,0,0,0,0,0.638892915656244,0.449806322366285,-0.0369370963453219,0,0,0,0.50987216153823,0.433653964318968,0.290789959667217,0.425557665274496,0.458531115875719,0.610256661018653,0.506011315990402,0.0424175362634017,0,-0.0369370963453219,0,0.0132896863044493,0.164294611462054,0.171094706807534,0.113459486329841,0.0543479932124108,0.0904330099276451,0.152559101774318,0.0999233952154288,0.0054525317394905,0,0,0.0508900604470426,0,-0.000817827429119735,0,0,-0.0369370963453219,0,0,0,-0.0199532598373054,0,-0.0195633556501106,0,0,0,0,0,0,0,0,0.0592603993571966,0,0,0.364605606582577,0.222218604879465,-0.0037092070123696,0,0,0,0,0,-0.00506525786230565,0,0,0,-0.00660831717116365,0,0,-0.0369370963453219,0,-0.0369370963453219,0.02293556068137,0.0077499582457404,0,0.040250349638994,0.0342427698068218,0.0147194505648231,0.00414474603320656,0,0.0144955951658201,0,0,-0.0321967863868722,0,-0.0369370963453219,-0.0369370963453219,0,0,0,0,0,0,0,0,0,0,0,0,0.0401292917010247,0,0,0,0,0,0.0387082368603573,0,0,0,0,0,0,-0.0369370963453219,0,-0.00200463058969131,0.015977476187483,0.636645856798219,0.610424614824129,-0.0369370963453219,0,0.100072561259033,0,0.0847275925579778,0.094421136748611,0.160047342874364,0.0858399916582904,0,0.199895454695966,0.107726693690609,0.499367001761506,0,0.0360322021690241,0.0655375003561515,0,0,0,0,0,0,0,0,0.0242842151565099,0,0,0,0,0.014613682408933,0.102741208795199,0.0842336466073278,0.0638559624157072,0.0709019855629759,0.138987216369306,0.199317972275718,0.207233764760942,0,0,0,-0.00379533629590137,0,0,0,0,0,0.571299644091104,-0.00268259366345185,0,0,-0.0369370963453219,-0.0243865467777577,0,0,0,0,0,0.0467325694812894,0.0409573115328379,0.00891186795853895,0.0824580172145032,0,0,0,0.100975358632432,0.0529304404135566,0,0,0.0302576134241717,0.0104972409201647,0,0.0393361010234518,0,0.0240960234281546,0,0.0216534965544966,0,0,-0.0369370963453219,0.0770538781573973,0.00363244494998078,0,0,0,-0.0122901942769708,0,0,-0.00792688577240325,-0.0160777205992839,-0.0369370963453219,0,-0.0369370963453219,0,0.0501291174112999,0,0.0336999689259957,0.0349835123635488,0,0,0,0,0.45538446618993,0.503769161246341,0.514353792078406,0.437987521456803,0.593301308581515,0.448336949294957,0.572528869921907,0.442189180625034,0.301013967865085,0.536409836541589,0.0623997076628837,0.201661905733908,0.11256483303918,0.0802863466790097,0.0980148718351943,0.143852073584747,0.0871588832444397,0.101939089046867,0.104526733770752,0.162100147846309,0.0724058529533566,0.107029488765471,0.150426320844712,0.140830175916047,0.141074929967196,0.0850392808519178,0.0941852266310416,0.103991173254267,0.090810314465418,0.13494660755086,0.128033729919821,0.0709519923534245,0.0979045551550735,0.139901635847952,0.137739026869319,0.144526934909379,0.0729583017401753,0.118111988575772,0.122983119003538,0,0.0841881292419956,0.165306508036975,0.18274542679306,0.15375413991078,0.0722184766579037,0.312473855175322,0.0951656716495665,0.18709443264019,0.0956250190829633,0.122644697176553,0.0942408201242882
|coexpression_dpi_cluster_scores_median=0.294846839931576,0,0,0,-0.0369370963453219,-0.00323812112682624,0,0,0,-0.0369370963453219,-0.00261823310098485,-0.0202710336620291,0,0,-0.0369370963453219,0,-0.0369370963453219,0,-0.0369370963453219,-0.0369370963453219,0.259645896973143,0,0,0,-0.0369370963453219,0,0,0,0,0,-0.0369370963453219,0,-0.0369370963453219,-0.0369370963453219,-0.0369370963453219,0,0,-0.0369370963453219,-0.0369370963453219,0,0,-0.0369370963453219,0,-0.011187800482476,-0.0159691084609007,0,0.059798141392627,0.635245079835789,0.548903199304265,0.372094891059197,0.311478974606717,0.42190993325844,-0.0369370963453219,0,-0.0369370963453219,0,0,0.0679869622572648,0.43575208194815,0.511235405376978,0.611993205395513,0.0633650746208235,0,0,-0.0369370963453219,0,0.835357459325175,1.04412118511182,0.359492786409444,0.444954592008576,0.281991593647068,1.0060213779873,0.868395343135975,0.221044652475595,0.382441870250987,0.36331738275905,0.683362391663869,0.814291721660672,0.814605266356349,0.411620989684397,0.488017403572414,0.48906556937507,0.932156624640465,0.754636418706044,0.712677771844715,0.712464920788248,0.661046734270472,0.417840182376512,0.169567910975632,0.0316393102377815,0,0,0.054392664277534,0,0,0,0,0,0,0,0.323872700473358,0,0,-0.0369370963453219,0.0425544574333691,0,0,0.0234784353458152,-0.0369370963453219,0,0.0131315716859029,0,0.008124093603417,0.0202758601755695,0,0,0,-0.00761034756080205,-0.0369370963453219,0,0,0,0,0.638892915656244,0.449806322366285,-0.0369370963453219,0,0,0,0.50987216153823,0.433653964318968,0.290789959667217,0.425557665274496,0.458531115875719,0.610256661018653,0.506011315990402,0.0424175362634017,0,-0.0369370963453219,0,0.0132896863044493,0.164294611462054,0.171094706807534,0.113459486329841,0.0543479932124108,0.0904330099276451,0.152559101774318,0.0999233952154288,0.0054525317394905,0,0,0.0508900604470426,0,-0.000817827429119735,0,0,-0.0369370963453219,0,0,0,-0.0199532598373054,0,-0.0195633556501106,0,0,0,0,0,0,0,0,0.0592603993571966,0,0,0.364605606582577,0.222218604879465,-0.0037092070123696,0,0,0,0,0,-0.00506525786230565,0,0,0,-0.00660831717116365,0,0,-0.0369370963453219,0,-0.0369370963453219,0.02293556068137,0.0077499582457404,0,0.040250349638994,0.0342427698068218,0.0147194505648231,0.00414474603320656,0,0.0144955951658201,0,0,-0.0321967863868722,0,-0.0369370963453219,-0.0369370963453219,0,0,0,0,0,0,0,0,0,0,0,0,0.0401292917010247,0,0,0,0,0,0.0387082368603573,0,0,0,0,0,0,-0.0369370963453219,0,-0.00200463058969131,0.015977476187483,0.636645856798219,0.610424614824129,-0.0369370963453219,0,0.100072561259033,0,0.0847275925579778,0.094421136748611,0.160047342874364,0.0858399916582904,0,0.199895454695966,0.107726693690609,0.499367001761506,0,0.0360322021690241,0.0655375003561515,0,0,0,0,0,0,0,0,0.0242842151565099,0,0,0,0,0.014613682408933,0.102741208795199,0.0842336466073278,0.0638559624157072,0.0709019855629759,0.138987216369306,0.199317972275718,0.207233764760942,0,0,0,-0.00379533629590137,0,0,0,0,0,0.571299644091104,-0.00268259366345185,0,0,-0.0369370963453219,-0.0243865467777577,0,0,0,0,0,0.0467325694812894,0.0409573115328379,0.00891186795853895,0.0824580172145032,0,0,0,0.100975358632432,0.0529304404135566,0,0,0.0302576134241717,0.0104972409201647,0,0.0393361010234518,0,0.0240960234281546,0,0.0216534965544966,0,0,-0.0369370963453219,0.0770538781573973,0.00363244494998078,0,0,0,-0.0122901942769708,0,0,-0.00792688577240325,-0.0160777205992839,-0.0369370963453219,0,-0.0369370963453219,0,0.0501291174112999,0,0.0336999689259957,0.0349835123635488,0,0,0,0,0.45538446618993,0.503769161246341,0.514353792078406,0.437987521456803,0.593301308581515,0.448336949294957,0.572528869921907,0.442189180625034,0.301013967865085,0.536409836541589,0.0623997076628837,0.201661905733908,0.11256483303918,0.0802863466790097,0.0980148718351943,0.143852073584747,0.0871588832444397,0.101939089046867,0.104526733770752,0.162100147846309,0.0724058529533566,0.107029488765471,0.150426320844712,0.140830175916047,0.141074929967196,0.0850392808519178,0.0941852266310416,0.103991173254267,0.090810314465418,0.13494660755086,0.128033729919821,0.0709519923534245,0.0979045551550735,0.139901635847952,0.137739026869319,0.144526934909379,0.0729583017401753,0.118111988575772,0.122983119003538,0,0.0841881292419956,0.165306508036975,0.18274542679306,0.15375413991078,0.0722184766579037,0.312473855175322,0.0951656716495665,0.18709443264019,0.0956250190829633,0.122644697176553,0.0942408201242882
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!9.97e-21!44;CL:0000133!9.97e-21!44;CL:0002319!3.18e-20!43;CL:0000055!3.68e-16!49;CL:0000540!1.84e-15!33;CL:0000047!1.84e-15!33;CL:0000031!1.84e-15!33;CL:0000404!1.84e-15!33;CL:0000117!3.62e-15!23;CL:0000337!3.62e-15!23;CL:0000393!1.32e-11!39;CL:0000211!1.32e-11!39;CL:0002321!1.86e-08!70
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!3.62e-38!75;UBERON:0001017!1.03e-37!73;UBERON:0004121!8.84e-34!95;UBERON:0000924!8.84e-34!95;UBERON:0006601!8.84e-34!95;UBERON:0000073!5.04e-30!54;UBERON:0002346!3.74e-29!64;UBERON:0003075!3.74e-29!64;UBERON:0007284!3.74e-29!64;UBERON:0001049!2.71e-28!52;UBERON:0005068!2.71e-28!52;UBERON:0006241!2.71e-28!52;UBERON:0007135!2.71e-28!52;UBERON:0010371!1.92e-25!73;UBERON:0000955!1.97e-24!47;UBERON:0006238!1.97e-24!47;UBERON:0002616!8.86e-24!46;UBERON:0003056!3.03e-21!49;UBERON:0002020!1.50e-20!34;UBERON:0003080!3.15e-20!40;UBERON:0002780!1.39e-19!39;UBERON:0001890!1.39e-19!39;UBERON:0006240!1.39e-19!39;UBERON:0010314!7.08e-19!92;UBERON:0003528!5.68e-17!29;UBERON:0002791!5.68e-17!29;UBERON:0001893!5.68e-17!29;UBERON:0000956!3.99e-12!21;UBERON:0001869!3.99e-12!21;UBERON:0000203!3.99e-12!21;UBERON:0002619!3.19e-10!17;UBERON:0003076!1.58e-08!12;UBERON:0003057!1.58e-08!12;UBERON:0002021!5.17e-07!10;UBERON:0000411!5.17e-07!10;UBERON:0001950!5.17e-07!10
}}
}}

Revision as of 21:11, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:8667033..8667046,-p3@Hey1
Mm9::chr4:41587002..41587016,-p1@Enho
Mm9::chr4:41587133..41587170,-p2@Enho
Mm9::chr5:136108551..136108564,+p3@Rhbdd2
Mm9::chr7:25266999..25267006,+p2@Cadm4
Mm9::chr7:25267010..25267095,+p1@Cadm4
Mm9::chr7:25284618..25284623,+p@chr7:25284618..25284623
+
Mm9::chr7:25286643..25286656,+p@chr7:25286643..25286656
+
Mm9::chr7:51684213..51684237,+p6@Lrrc4b
Mm9::chr7:51684308..51684349,+p4@Lrrc4b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
nervous system3.62e-3875
central nervous system1.03e-3773
ectoderm-derived structure8.84e-3495
ectoderm8.84e-3495
presumptive ectoderm8.84e-3495
regional part of nervous system5.04e-3054
neurectoderm3.74e-2964
neural plate3.74e-2964
presumptive neural plate3.74e-2964
neural tube2.71e-2852
neural rod2.71e-2852
future spinal cord2.71e-2852
neural keel2.71e-2852
ecto-epithelium1.92e-2573
brain1.97e-2447
future brain1.97e-2447
regional part of brain8.86e-2446
pre-chordal neural plate3.03e-2149
gray matter1.50e-2034
anterior neural tube3.15e-2040
regional part of forebrain1.39e-1939
forebrain1.39e-1939
future forebrain1.39e-1939
structure with developmental contribution from neural crest7.08e-1992
brain grey matter5.68e-1729
regional part of telencephalon5.68e-1729
telencephalon5.68e-1729
cerebral cortex3.99e-1221
cerebral hemisphere3.99e-1221
pallium3.99e-1221
regional part of cerebral cortex3.19e-1017
posterior neural tube1.58e-0812
chordal neural plate1.58e-0812
occipital lobe5.17e-0710
visual cortex5.17e-0710
neocortex5.17e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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