Coexpression cluster:C1364: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CEBPB#1051;6:7.97114762582482:3.89609159898068e-06:0.000126959098441792!E2F1#1869;6:4.90738921487932:7.15746523583771e-05:0.00112662925661742!EGR1#1958;6:4.98817909481014:6.48943962979974e-05:0.00105470056877786!ELF1#1997;5:3.54841496567295:0.00344683777572169:0.0175251589727179!FOS#2353;6:8.9979553088944:1.88302066097805e-06:6.93933644360926e-05!MAX#4149;5:5.37712959083927:0.00046700155888958:0.00429454748691281!MYC#4609;5:4.3519015596745:0.00129795634572411:0.00869681547386159!NFYA#4800;6:18.4255806998305:2.55187028850458e-08:1.77321876953513e-06!NFYB#4801;4:11.1731955023576:0.000172334334821877:0.00209943142359291!PBX3#5090;6:21.9145126867441:9.01304984425575e-09:6.89607262039726e-07!SETDB1#9869;6:40.3200261780105:2.32000395126066e-10:2.37781052665076e-08!SP1#6667;6:5.6983813781409:2.91961319085282e-05:0.0006093554796952!SP2#6668;6:26.1535304938446:3.11839597221971e-09:2.60545725554123e-07!SUZ12#23512;4:33.4105206073753:2.29902183370319e-06:8.18641463655395e-05!ZNF263#10127;6:8.22184163701068:3.23542093046082e-06:0.000108685791751817 | |tf_chipseq_enrich=CEBPB#1051;6:7.97114762582482:3.89609159898068e-06:0.000126959098441792!E2F1#1869;6:4.90738921487932:7.15746523583771e-05:0.00112662925661742!EGR1#1958;6:4.98817909481014:6.48943962979974e-05:0.00105470056877786!ELF1#1997;5:3.54841496567295:0.00344683777572169:0.0175251589727179!FOS#2353;6:8.9979553088944:1.88302066097805e-06:6.93933644360926e-05!MAX#4149;5:5.37712959083927:0.00046700155888958:0.00429454748691281!MYC#4609;5:4.3519015596745:0.00129795634572411:0.00869681547386159!NFYA#4800;6:18.4255806998305:2.55187028850458e-08:1.77321876953513e-06!NFYB#4801;4:11.1731955023576:0.000172334334821877:0.00209943142359291!PBX3#5090;6:21.9145126867441:9.01304984425575e-09:6.89607262039726e-07!SETDB1#9869;6:40.3200261780105:2.32000395126066e-10:2.37781052665076e-08!SP1#6667;6:5.6983813781409:2.91961319085282e-05:0.0006093554796952!SP2#6668;6:26.1535304938446:3.11839597221971e-09:2.60545725554123e-07!SUZ12#23512;4:33.4105206073753:2.29902183370319e-06:8.18641463655395e-05!ZNF263#10127;6:8.22184163701068:3.23542093046082e-06:0.000108685791751817 | ||
|tfbs_overrepresentation=0.272825,0.113895,0.919872,0.093154,0.359621,0.492787,0.0841651,0.657264,0.0643695,0.0507505,0.259407,0.399944,0.341907,0.236085,0.275252,0.119969,0.262088,0.18676,0.102909,0.204438,0.341686,0.247578,0.157234,0.180791,0.0814159,0.384547,0.37494,0.173212,0.266831,0.178021,0.3679,0.215086,0.0357376,0.373119,0.128625,0.161809,0.902769,0.0840902,0.226218,0.128959,0.183651,0.0486174,0.260466,0.334176,0.227213,0.0711697,0.074588,0.330075,0.210181,0.227712,0.284405,0.105423,0.135407,0.177342,0.358057,0.0753565,0.203364,0.380173,0.150513,0.199999,0.0579941,0.276509,0.205409,0.146128,0.10616,0.0984283,0.580456,0.116417,0.164736,0.3062,0.61426,0.130776,0.170145,0.224513,0.0148962,0.0339424,0.183676,0.0854797,0.0731115,0.0144524,0.182113,0.402334,0.0831938,0.216503,0.497782,0.440248,0.124542,0.37437,0.290226,0.121557,0.164159,0.0967167,0.181667,0.0925031,0.163486,0.216824,0.102122,0.28366,0.17689,0.473112,0.111667,0.476145,0.263619,0.0727591,0.390176,0.080182,0.12949,0.561883,0.267635,0.466115,0.331856,0.0668385,0.276738,0.0350582,0.192196,0.0663658,0.0402636,0.1101,0.258716,0.160649,0.305628,0.383317,0.260612,0.164207,0.194257,0.0587284,0.173151,0.0293679,0.161604,0.251658,0.115605,0.144069,0.111159,0.045053,0.235761,0.204515,0.125521,0.10761,0.0649881,0.00789487,0.0450332,0.238929,0.366262,0.28766,0.273522,0.133829,0.18788,0.161361,0.0763672,0.227065,0.361034,0.266711,0.328768,0.0524571,0.0835935,0.221281,0.14393,0.40461,0.100724,0.0663128,0.403582,0.181487,0.219679,0.273735,0.472167,0.215506,0.0784618,0.238515,0.0790799,0.526782,0.327089,0.256483,0.0380019,0.10534,0.153476,0.172044,0.0374763,0.330576,0.325054,0.069998,0.292457,0.229948,0.0540612,0.21779,0.142014,0.223569,0.332561,0.0787371,0.158872,0.317,0.20281,0.339514,0.230757,0.405269,0.212647,0.0919303,0.150381,0.116937,0.130723,0.207318,0.170629,0.117148,0.0607132,0.117534,0.254283,0.451528,0.472314,0.280641,0.370039,0.324906,0.0896296,0.197823,0.22763,0.213053,0.173222,0.309534,0.301442,0.191696,0.122022,0.195373,0.263715,0.606181,0.287766,0.296123,0.142265,0.237192,0.258424,0.164555,0.117251,0.116204,0.814864,0.253782,0.0819301,0.147153,0.18264,0.177704,0.092224,0.45696,0.30027,0.383466,0.0623418,0.57619,0.187116,0.15928,0.219044,0.254951,0.156377,0.21083,0.606625,0.000131197,0.292806,0.336043,0.336985,0.186448,0.186558,0.293852,0.202983,0.362971,0.134325,0.0326625,0.120009,0.319541,0.300061,0.239783,0.0678354,0.155564,0.15574,0.175654,0.222213,0.145331,0.479224,0.122578,0.444637,0.693924,0.165683,0.0746442,0.243403,0.827706,0.000275688,0.0042716,0.86741,0.809072,0.673858,0.019561,0.00154788,0.319502,0.454695,0.000229739,0.607724,0.169789,0.741357,0.552041,0.635008,0.00140874,0.783515,0.00357391,0.469955,0.498953,0.279316,0.63674,0.520043,0.837729,0.339439,0.593966,0.33041,0.6682,0.207878,0.192512,0.388991,0.00103119,0.611777,0.130242,0.346544,0.777522,0.432462,0.604085,0.291623,0.734265,0.442844,0.477024,0.512499,0.731446,0.53335,0.397052,0.753214,0.000666399,0.486953,0.0412976,0.514143,0.498324,0.695401,0.00842032,0.659897,0.00555655,0.726203,0.00670674,0.240856,0.0967665,0.0125429,0.331481,0.913739,0.451054,0.761231,0.474883,0.417024,0.336852,0.209381,0.78433,0.468536,0.860083,0.407671,0.76366,0.771595,0.43545,0.483867,0.721622,0.29984,0.129605,0.140844,0.335439,0.037567,0.00948104,0.520224,0.65524,0.651648,0.794645,0.798903,0.118041,0.0138919,0.173458,0.00314511,0.0881806,0.143918,0.405564,0.620557,0.531159,0.0531532,0.502548,0.568759,0.726789,0.494769,0.547216,0.899629,0.47878,0.116542,0.673583,0.404165,0.559521,0.356202,0.288188,0.812902,0.665296,0.379594,0.297898,0.766191,0.018926,0.557914,0.268648,0.269896,0.622411,0.0702636,0.0325646,0.348945,0.440842,0.282051,0.0909735,0.2554,0.451268,0.251408,0.187452,0.794085,0.501137,0.488193,0.569315,0.519135,0.518055,0.000646081,0.753073,0.435461,0.488244,0.456149,0.224179,0.401321,0.647111,0.660192,0.0136633,0.713637,0.0652332,0.369917,0.774751,0.622534,0.683229,0.130971,0.563445,0.0240897,0.483651,0.263421,0.342907,0.770075,0.293756,0.42025,0.605969,0.410562,0.343113,0.170331,0.115576,0.774372,0.859607,0.57398,0.78784,0.577344,0.724447,0.645462,0.00513624,0.863295,0.532388,0.134669,0.108266,0.348016,0.149912,0.111821,0.267815,0.396879,0.365836,0.689622,0.68834,0.346776,0.211334,0.494962,0.0851816,0.514659,0.23696,0.00326635,0.202355,0.0270952,0.121642,0.249732,0.0354999,0.515499,0.481305,0.628382,0.0908048,0.310441,0.216037,0.198185,0.171816,0.165877,0.294115,0.202749,0.0858038,0.00776602,0.23191,0.241631,0.376483,0.349839,0.572771,0.0974547,0.15892,0.128942,0.331179,0.210172,0.390637,0.554857,0.352924,0.246924,0.341783,0.0940377,0.359953,0.279613,0.239194,0.32067,0.334938,0.309827,0.167604,0.181395,0.0223847,0.395388,0.202628,0.474729,0.00960329,0.317242,0.262323,0.0125972,0.0592343,0.245796,0.0870651,0.101982,0.374106,0.282907,0.153213,0.185351,0.29465,0.231794,0.173078,0.108497,0.143495,0.767403,0.255803,0.0289867,0.127078,0.378656,0.392439,0.153874,0.145835,0.0494127,0.349099,0.106792,0.149864,0.109211,0.081783,0.0678906,0.076236,0.444489,0.31161,0.361651,0.0953991,0.319245,0.603631,0.0650516,0.00190767,0.390908,0.0773818,0.115736,0.662745,0.229952,0.205891,0.207936,0.454529,0.0563868,0.796918,0.268235,0.0761868,0.167255,0.107028,0.267379,0.443026,0.387018,0.343977,0.244992,0.632847,0.417985,0.147684,0.146453,0.315229,0.157053,0.332022,0.557852,0.273582,0.262915,0.306556,0.26147,0.170005,0.523331,7.50346e-05,0.092369,0.18076,0.692556,0.248113,0.148878,0.206465,0.240599,0.245625,0.0867386,0.000240347,0.100989,0.188919,0.0975693,0.119835,0.145322,0.178533,0.267392,0.0668831,0.142859,0.477403,0.932252,0.358495,0.387334,0.00528494,0.224219,0.347904,0.324262,0.795569,0.111827,0.0929171,0.0188883,0.118035,0.319902,0.510835,0.137556,0.397628,0.49748,0.0699003,0.235435,0.31953,2.1279e-07,0.191316,0.370285,0.388777,0.204831,0.130161,0.205669,0.0963721,0.182511,0.369139,0.145449,0.0892237,0.208284,0.135613,0.401189,0.283386,0.0739625,0.247651,0.0879809,0.104922,0.215434,0.177269,0.31512,0.198881,0.394164,0.111068,0.4137,0.146194,0.491435,0.281527,0.35188,0.3889,0.01993,0.547162,0.316041,0.565635,0.280212,0.121421,0.346061,0.275075,0.754571,0.287361,0.138613,0.175356,0.116846,0.267784,0.278571,0.185281,0.286026,0.31159,0.349805,0.255609,0.0019883,0.439697,0.493192,0.223892,0.160738,0.553042,0.000114448,0.212611,0.338443,0.319005,0.180695,0.45842,0.113039,0.261316,0.189596,0.448839,0.196587,0.213353,0.0504588,0.307626,0.173101,0.828194,0.306056,0.341713,0.156156,0.33569,0.288104,0.526446,0.761719,0.114697,0.433479,0.324956,0.388835,0.408751,0.648685,0.855529,0.070868,0.654476,0.245,0.0850317,0.249379,0.294768,0.60218,0.696439,0.648789,0.409327,0.466607,0.685907,0.603176,0.305003,0.334228,0.0102452,0.00384174,0.592254,0.647186,0.616927,0.252602,6.02563e-05,0.312447,0.0462498,0.628346,7.87754e-05,0.0524496,0.689958,0.772379,0.000118059,0.00953811,0.402631,0.768239,0.573004,0.003321,0.488239,0.410034,0.476894,0.2667,0.494578,0.301433,0.711296,0.148546,0.000402252,0.727698,0.198334,0.717449,0.449761,0.6937,0.427531,0.0337266,0.078797,0.743042,0.403716,0.297082,0.938085,0.00543505,0.01312,0.00583451,0.607585,0.0136089,0.72684,0.0904525,0.935968,0.000990621,0.0768361,0.360788,0.368898,0.510705,0.447298,0.304675,0.212589,0.619669,0.287839,0.262665,0.286983,0.183051,0.530004,0.583703,0.300816,0.0976418,0.225997,0.145043,0.0070276,0.529993,0.329919,0.484887,0.359097,5.59775e-06,0.650025,0.766238,0.540605,0.00638735,0.563634,0.0428579,0.624569,0.772094,0.00192861,0.785953,0.394773,0.659669,0.659285,0.711322,0.742622,0.00208109,0.367684,0.700165,0.258457,0.00219836,0.305952,0.356524,0.159817,0.532764,0.730276,0.319704,0.555004,0.607569,0.436503,0.0899962,0.597394,0.783534,0.000568507,0.594475,0.00228504,0.00124467,0.47205,0.24311,0.331346,0.0117929,0.474879,0.148175,0.518205,0.424119,0.237985,0.519279,0.000911537,0.745866,0.0176263,0.414645,0.438945,0.619652,0.706112,0.754688,0.39196,0.416041,0.0101665,0.346355,0.712437,0.0395208,0.520214,0.708106,0.486574,0.493703,0.722202,0.639482,0.471879,0.600697,0.474504,0.621275,0.142884,0.589415,0.564042,0.356483,0.5588,0.0764807,0.55481,0.443148,0.509842,0.326636,0.368631,0.321667,0.149733,0.477082,0.078203,0.066291,0.343349,0.450702,0.341084,0.138667,0.459605,0.298707,0.345583,0.299527,0.390707,0.372757,0.172033,0.181635,0.304651,0.440771,0.246146,0.445744,0.371991,0.694395,0.326635,0.349721,0.39301,0.396235,0.566617,0.524829,0.388491,0.357781,0.338712,0.231439,0.359148,0.0641227,0.177916,0.232711,0.327419,0.402268,0.479755,0.0142145,0.245045,0.373321,0.111784,0.0910933,0.130132,0.373481,0.462042,0.213394,0.0403158,0.406219,0.298,0.40549,0.30902,0.0755079,0.12783,0.101672,0.0890286,0.465261,0.362561,0.578088,0.285875,0.225945,0.18761,0.20516,0.115576,0.385234,0.291842,0.392097,0.352327,0.232997,0.451856,0.168458,0.328594,0.294205,0.448388,0.278746,0.387086,0.232479,0.334662,0.336321,0.139427,0.450171,0.124188,0.366035,0.00152436,0.372037,0.0382775,0.3488,0.43615,0.218495,0.398705,0.431643,0.316114,0.360691,0.26003,0.35537,0.423126,0.288449,0.244977,0.447896,0.395958,0.314638,0.322324,0.184473,0.363414,0.524458,0.141901,0.388728,0.157712,0.3633,0.202084,0.104337,0.104656,0.279419,0.149946,0.0797883,0.104584,0.180857,0.454949,0.378002,0.340219,0.100112,0.343186,0.155969,0.186603,0.124175,0.228962,0.12366,0.198264,0.128253,0.14669,0.240899,0.206424,0.0862744,0.129421,0.171188,0.0721407,0.251724,0.36701,0.156256,0.491191,0.573638,0.263371,0.457065,0.446399,0.360168,0.403229,0.158834,0.442751,0.323763,0.486842,0.458912,0.246162,0.295506,0.369944,0.358783,0.491474,0.417013,0.0455047,0.21822,0.388558,0.397562,0.21727,0.351946,0.345508,0.484083,0.144065,0.437432,0.302171,0.398223,0.178399,0.0465451,0.400541,0.0800337,0.182559,0.164471,0.533328,0.00673561,0.0476793,0.46896,0.137165,0.132237,0.191837,0.395568,0.320916,0.289812,0.384881,0.441686,0.369492,0.592234 | |tfbs_overrepresentation=0.272825,0.113895,0.919872,0.093154,0.359621,0.492787,0.0841651,0.657264,0.0643695,0.0507505,0.259407,0.399944,0.341907,0.236085,0.275252,0.119969,0.262088,0.18676,0.102909,0.204438,0.341686,0.247578,0.157234,0.180791,0.0814159,0.384547,0.37494,0.173212,0.266831,0.178021,0.3679,0.215086,0.0357376,0.373119,0.128625,0.161809,0.902769,0.0840902,0.226218,0.128959,0.183651,0.0486174,0.260466,0.334176,0.227213,0.0711697,0.074588,0.330075,0.210181,0.227712,0.284405,0.105423,0.135407,0.177342,0.358057,0.0753565,0.203364,0.380173,0.150513,0.199999,0.0579941,0.276509,0.205409,0.146128,0.10616,0.0984283,0.580456,0.116417,0.164736,0.3062,0.61426,0.130776,0.170145,0.224513,0.0148962,0.0339424,0.183676,0.0854797,0.0731115,0.0144524,0.182113,0.402334,0.0831938,0.216503,0.497782,0.440248,0.124542,0.37437,0.290226,0.121557,0.164159,0.0967167,0.181667,0.0925031,0.163486,0.216824,0.102122,0.28366,0.17689,0.473112,0.111667,0.476145,0.263619,0.0727591,0.390176,0.080182,0.12949,0.561883,0.267635,0.466115,0.331856,0.0668385,0.276738,0.0350582,0.192196,0.0663658,0.0402636,0.1101,0.258716,0.160649,0.305628,0.383317,0.260612,0.164207,0.194257,0.0587284,0.173151,0.0293679,0.161604,0.251658,0.115605,0.144069,0.111159,0.045053,0.235761,0.204515,0.125521,0.10761,0.0649881,0.00789487,0.0450332,0.238929,0.366262,0.28766,0.273522,0.133829,0.18788,0.161361,0.0763672,0.227065,0.361034,0.266711,0.328768,0.0524571,0.0835935,0.221281,0.14393,0.40461,0.100724,0.0663128,0.403582,0.181487,0.219679,0.273735,0.472167,0.215506,0.0784618,0.238515,0.0790799,0.526782,0.327089,0.256483,0.0380019,0.10534,0.153476,0.172044,0.0374763,0.330576,0.325054,0.069998,0.292457,0.229948,0.0540612,0.21779,0.142014,0.223569,0.332561,0.0787371,0.158872,0.317,0.20281,0.339514,0.230757,0.405269,0.212647,0.0919303,0.150381,0.116937,0.130723,0.207318,0.170629,0.117148,0.0607132,0.117534,0.254283,0.451528,0.472314,0.280641,0.370039,0.324906,0.0896296,0.197823,0.22763,0.213053,0.173222,0.309534,0.301442,0.191696,0.122022,0.195373,0.263715,0.606181,0.287766,0.296123,0.142265,0.237192,0.258424,0.164555,0.117251,0.116204,0.814864,0.253782,0.0819301,0.147153,0.18264,0.177704,0.092224,0.45696,0.30027,0.383466,0.0623418,0.57619,0.187116,0.15928,0.219044,0.254951,0.156377,0.21083,0.606625,0.000131197,0.292806,0.336043,0.336985,0.186448,0.186558,0.293852,0.202983,0.362971,0.134325,0.0326625,0.120009,0.319541,0.300061,0.239783,0.0678354,0.155564,0.15574,0.175654,0.222213,0.145331,0.479224,0.122578,0.444637,0.693924,0.165683,0.0746442,0.243403,0.827706,0.000275688,0.0042716,0.86741,0.809072,0.673858,0.019561,0.00154788,0.319502,0.454695,0.000229739,0.607724,0.169789,0.741357,0.552041,0.635008,0.00140874,0.783515,0.00357391,0.469955,0.498953,0.279316,0.63674,0.520043,0.837729,0.339439,0.593966,0.33041,0.6682,0.207878,0.192512,0.388991,0.00103119,0.611777,0.130242,0.346544,0.777522,0.432462,0.604085,0.291623,0.734265,0.442844,0.477024,0.512499,0.731446,0.53335,0.397052,0.753214,0.000666399,0.486953,0.0412976,0.514143,0.498324,0.695401,0.00842032,0.659897,0.00555655,0.726203,0.00670674,0.240856,0.0967665,0.0125429,0.331481,0.913739,0.451054,0.761231,0.474883,0.417024,0.336852,0.209381,0.78433,0.468536,0.860083,0.407671,0.76366,0.771595,0.43545,0.483867,0.721622,0.29984,0.129605,0.140844,0.335439,0.037567,0.00948104,0.520224,0.65524,0.651648,0.794645,0.798903,0.118041,0.0138919,0.173458,0.00314511,0.0881806,0.143918,0.405564,0.620557,0.531159,0.0531532,0.502548,0.568759,0.726789,0.494769,0.547216,0.899629,0.47878,0.116542,0.673583,0.404165,0.559521,0.356202,0.288188,0.812902,0.665296,0.379594,0.297898,0.766191,0.018926,0.557914,0.268648,0.269896,0.622411,0.0702636,0.0325646,0.348945,0.440842,0.282051,0.0909735,0.2554,0.451268,0.251408,0.187452,0.794085,0.501137,0.488193,0.569315,0.519135,0.518055,0.000646081,0.753073,0.435461,0.488244,0.456149,0.224179,0.401321,0.647111,0.660192,0.0136633,0.713637,0.0652332,0.369917,0.774751,0.622534,0.683229,0.130971,0.563445,0.0240897,0.483651,0.263421,0.342907,0.770075,0.293756,0.42025,0.605969,0.410562,0.343113,0.170331,0.115576,0.774372,0.859607,0.57398,0.78784,0.577344,0.724447,0.645462,0.00513624,0.863295,0.532388,0.134669,0.108266,0.348016,0.149912,0.111821,0.267815,0.396879,0.365836,0.689622,0.68834,0.346776,0.211334,0.494962,0.0851816,0.514659,0.23696,0.00326635,0.202355,0.0270952,0.121642,0.249732,0.0354999,0.515499,0.481305,0.628382,0.0908048,0.310441,0.216037,0.198185,0.171816,0.165877,0.294115,0.202749,0.0858038,0.00776602,0.23191,0.241631,0.376483,0.349839,0.572771,0.0974547,0.15892,0.128942,0.331179,0.210172,0.390637,0.554857,0.352924,0.246924,0.341783,0.0940377,0.359953,0.279613,0.239194,0.32067,0.334938,0.309827,0.167604,0.181395,0.0223847,0.395388,0.202628,0.474729,0.00960329,0.317242,0.262323,0.0125972,0.0592343,0.245796,0.0870651,0.101982,0.374106,0.282907,0.153213,0.185351,0.29465,0.231794,0.173078,0.108497,0.143495,0.767403,0.255803,0.0289867,0.127078,0.378656,0.392439,0.153874,0.145835,0.0494127,0.349099,0.106792,0.149864,0.109211,0.081783,0.0678906,0.076236,0.444489,0.31161,0.361651,0.0953991,0.319245,0.603631,0.0650516,0.00190767,0.390908,0.0773818,0.115736,0.662745,0.229952,0.205891,0.207936,0.454529,0.0563868,0.796918,0.268235,0.0761868,0.167255,0.107028,0.267379,0.443026,0.387018,0.343977,0.244992,0.632847,0.417985,0.147684,0.146453,0.315229,0.157053,0.332022,0.557852,0.273582,0.262915,0.306556,0.26147,0.170005,0.523331,7.50346e-05,0.092369,0.18076,0.692556,0.248113,0.148878,0.206465,0.240599,0.245625,0.0867386,0.000240347,0.100989,0.188919,0.0975693,0.119835,0.145322,0.178533,0.267392,0.0668831,0.142859,0.477403,0.932252,0.358495,0.387334,0.00528494,0.224219,0.347904,0.324262,0.795569,0.111827,0.0929171,0.0188883,0.118035,0.319902,0.510835,0.137556,0.397628,0.49748,0.0699003,0.235435,0.31953,2.1279e-07,0.191316,0.370285,0.388777,0.204831,0.130161,0.205669,0.0963721,0.182511,0.369139,0.145449,0.0892237,0.208284,0.135613,0.401189,0.283386,0.0739625,0.247651,0.0879809,0.104922,0.215434,0.177269,0.31512,0.198881,0.394164,0.111068,0.4137,0.146194,0.491435,0.281527,0.35188,0.3889,0.01993,0.547162,0.316041,0.565635,0.280212,0.121421,0.346061,0.275075,0.754571,0.287361,0.138613,0.175356,0.116846,0.267784,0.278571,0.185281,0.286026,0.31159,0.349805,0.255609,0.0019883,0.439697,0.493192,0.223892,0.160738,0.553042,0.000114448,0.212611,0.338443,0.319005,0.180695,0.45842,0.113039,0.261316,0.189596,0.448839,0.196587,0.213353,0.0504588,0.307626,0.173101,0.828194,0.306056,0.341713,0.156156,0.33569,0.288104,0.526446,0.761719,0.114697,0.433479,0.324956,0.388835,0.408751,0.648685,0.855529,0.070868,0.654476,0.245,0.0850317,0.249379,0.294768,0.60218,0.696439,0.648789,0.409327,0.466607,0.685907,0.603176,0.305003,0.334228,0.0102452,0.00384174,0.592254,0.647186,0.616927,0.252602,6.02563e-05,0.312447,0.0462498,0.628346,7.87754e-05,0.0524496,0.689958,0.772379,0.000118059,0.00953811,0.402631,0.768239,0.573004,0.003321,0.488239,0.410034,0.476894,0.2667,0.494578,0.301433,0.711296,0.148546,0.000402252,0.727698,0.198334,0.717449,0.449761,0.6937,0.427531,0.0337266,0.078797,0.743042,0.403716,0.297082,0.938085,0.00543505,0.01312,0.00583451,0.607585,0.0136089,0.72684,0.0904525,0.935968,0.000990621,0.0768361,0.360788,0.368898,0.510705,0.447298,0.304675,0.212589,0.619669,0.287839,0.262665,0.286983,0.183051,0.530004,0.583703,0.300816,0.0976418,0.225997,0.145043,0.0070276,0.529993,0.329919,0.484887,0.359097,5.59775e-06,0.650025,0.766238,0.540605,0.00638735,0.563634,0.0428579,0.624569,0.772094,0.00192861,0.785953,0.394773,0.659669,0.659285,0.711322,0.742622,0.00208109,0.367684,0.700165,0.258457,0.00219836,0.305952,0.356524,0.159817,0.532764,0.730276,0.319704,0.555004,0.607569,0.436503,0.0899962,0.597394,0.783534,0.000568507,0.594475,0.00228504,0.00124467,0.47205,0.24311,0.331346,0.0117929,0.474879,0.148175,0.518205,0.424119,0.237985,0.519279,0.000911537,0.745866,0.0176263,0.414645,0.438945,0.619652,0.706112,0.754688,0.39196,0.416041,0.0101665,0.346355,0.712437,0.0395208,0.520214,0.708106,0.486574,0.493703,0.722202,0.639482,0.471879,0.600697,0.474504,0.621275,0.142884,0.589415,0.564042,0.356483,0.5588,0.0764807,0.55481,0.443148,0.509842,0.326636,0.368631,0.321667,0.149733,0.477082,0.078203,0.066291,0.343349,0.450702,0.341084,0.138667,0.459605,0.298707,0.345583,0.299527,0.390707,0.372757,0.172033,0.181635,0.304651,0.440771,0.246146,0.445744,0.371991,0.694395,0.326635,0.349721,0.39301,0.396235,0.566617,0.524829,0.388491,0.357781,0.338712,0.231439,0.359148,0.0641227,0.177916,0.232711,0.327419,0.402268,0.479755,0.0142145,0.245045,0.373321,0.111784,0.0910933,0.130132,0.373481,0.462042,0.213394,0.0403158,0.406219,0.298,0.40549,0.30902,0.0755079,0.12783,0.101672,0.0890286,0.465261,0.362561,0.578088,0.285875,0.225945,0.18761,0.20516,0.115576,0.385234,0.291842,0.392097,0.352327,0.232997,0.451856,0.168458,0.328594,0.294205,0.448388,0.278746,0.387086,0.232479,0.334662,0.336321,0.139427,0.450171,0.124188,0.366035,0.00152436,0.372037,0.0382775,0.3488,0.43615,0.218495,0.398705,0.431643,0.316114,0.360691,0.26003,0.35537,0.423126,0.288449,0.244977,0.447896,0.395958,0.314638,0.322324,0.184473,0.363414,0.524458,0.141901,0.388728,0.157712,0.3633,0.202084,0.104337,0.104656,0.279419,0.149946,0.0797883,0.104584,0.180857,0.454949,0.378002,0.340219,0.100112,0.343186,0.155969,0.186603,0.124175,0.228962,0.12366,0.198264,0.128253,0.14669,0.240899,0.206424,0.0862744,0.129421,0.171188,0.0721407,0.251724,0.36701,0.156256,0.491191,0.573638,0.263371,0.457065,0.446399,0.360168,0.403229,0.158834,0.442751,0.323763,0.486842,0.458912,0.246162,0.295506,0.369944,0.358783,0.491474,0.417013,0.0455047,0.21822,0.388558,0.397562,0.21727,0.351946,0.345508,0.484083,0.144065,0.437432,0.302171,0.398223,0.178399,0.0465451,0.400541,0.0800337,0.182559,0.164471,0.533328,0.00673561,0.0476793,0.46896,0.137165,0.132237,0.191837,0.395568,0.320916,0.289812,0.384881,0.441686,0.369492,0.592234 | ||
|tfbs_overrepresentation_for_novel_motifs=0.44418,0.946942,0.436508,0.58616,0.393082,0.584466,0.662701,0.269608,0.267027,1.41135,0.553339,0.707204,2.60726,0.650887,0.391663,0.415981,0.889639,0.336106,1.23744,1.30166,0.436569,0.6169,0.576478,1.00694,0.483957,1.73319,0.585619,0.574247,1.02557,3.11356,0.530785,0.92701,3.13172,0.640661,0.35719,3.42097,0.35388,0.585658,0.329602,1.28576,0.355745,0.513952,0.664116,0.390088,2.42818,0.468392,0.66382,0.542147,0.630853,0.396429,0.745008,2.73134,0.149032,1.00488,1.15929,1.57403,0.400834,0.62023,1.04504,2.54967,0.968558,0.666252,0.267534,0.861462,0.684675,0.826413,1.24834,1.61834,0.916468,1.45553,0.500342,0.275507,4.31331,1.15727,0.218784,0.206105,0.192925,0.84426,0.913168,0.477584,0.676305,0.86037,0.684313,2.11086,2.50005,1.10459,0.126687,3.89396,0.771626,1.71797,1.34233,1.07807,0.94406,0.30974,1.80351,0.32338,0.234532,0.987239,0.776336,3.72085,0.881389,0.938327,0.981588,0.893363,0.814675,1.35291,0.877269,0.647343,4.2232,0.376529,0.44815,0.978783,0.430775,0.563054,1.29401,0.352243,0.800507,0.529546,0.824029,0.312699,1.14892,0.769145,0.581628,0.695878,1.40534,0.845034,0.656181,0.949126,1.1919,0.324369,1.07876,0.53374,1.20639,0.692462,1.35529,1.58608,0.524606,0.57483,1.31259,2.17352,1.7705,1.27501,0.657956,0.983666,0.816466,0.611524,0.799467,2.01411,0.510514,0.306342,0.136746,0.308967,1.07915,0.258882,0.665754,1.48627,1.78411,0.378604,0.484017,0.454152,1.27379,1.06043,0.912368,1.1583,0.83286,0.683502,6.06797,0.661335,1.48859 | |||
}} | }} | ||
Revision as of 14:50, 26 November 2012
Full id: C1364_Hepatocyte_liver_occipital_cerebellum_somatostatinoma_small_pancreas
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 8.78e-10 | 106 |
| cell type cancer | 3.30e-09 | 143 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CEBPB#1051 | 6 | 7.97114762582482 | 3.89609159898068e-06 | 0.000126959098441792 |
| E2F1#1869 | 6 | 4.90738921487932 | 7.15746523583771e-05 | 0.00112662925661742 |
| EGR1#1958 | 6 | 4.98817909481014 | 6.48943962979974e-05 | 0.00105470056877786 |
| ELF1#1997 | 5 | 3.54841496567295 | 0.00344683777572169 | 0.0175251589727179 |
| FOS#2353 | 6 | 8.9979553088944 | 1.88302066097805e-06 | 6.93933644360926e-05 |
| MAX#4149 | 5 | 5.37712959083927 | 0.00046700155888958 | 0.00429454748691281 |
| MYC#4609 | 5 | 4.3519015596745 | 0.00129795634572411 | 0.00869681547386159 |
| NFYA#4800 | 6 | 18.4255806998305 | 2.55187028850458e-08 | 1.77321876953513e-06 |
| NFYB#4801 | 4 | 11.1731955023576 | 0.000172334334821877 | 0.00209943142359291 |
| PBX3#5090 | 6 | 21.9145126867441 | 9.01304984425575e-09 | 6.89607262039726e-07 |
| SETDB1#9869 | 6 | 40.3200261780105 | 2.32000395126066e-10 | 2.37781052665076e-08 |
| SP1#6667 | 6 | 5.6983813781409 | 2.91961319085282e-05 | 0.0006093554796952 |
| SP2#6668 | 6 | 26.1535304938446 | 3.11839597221971e-09 | 2.60545725554123e-07 |
| SUZ12#23512 | 4 | 33.4105206073753 | 2.29902183370319e-06 | 8.18641463655395e-05 |
| ZNF263#10127 | 6 | 8.22184163701068 | 3.23542093046082e-06 | 0.000108685791751817 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
