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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!8.97e-12!134;UBERON:0001041!5.93e-10!80;UBERON:0009569!6.14e-08!66;UBERON:0005177!1.95e-07!79;UBERON:0000466!5.52e-07!79;UBERON:0000475!8.85e-07!150
|ontology_enrichment_uberon=UBERON:0001048!8.97e-12!134;UBERON:0001041!5.93e-10!80;UBERON:0009569!6.14e-08!66;UBERON:0005177!1.95e-07!79;UBERON:0000466!5.52e-07!79;UBERON:0000475!8.85e-07!150
|tfbs_overrepresentation_for_novel_motifs=0.0130597,1.52527e-09,0.00251673,0.561799,0.330826,3.69349,0.0179278,0.0670263,0.0864989,3.03911e-07,0.00938929,0.609528,0.000953602,0.0561231,0.827526,0,0.00942464,1.72263,0.0270867,0.00178805,0.981096,0.000589172,0.000733803,1.82064,0.000768659,0.0296328,0.000281492,0.00607858,0.00396821,0.000306971,0.0151573,0.24271,0.00472485,0.0588882,0.000137266,0.00267237,5.86345e-07,0.0403399,0.303848,0.0216515,0.96682,0.00517819,0.102212,1.64494,3.28896e-11,0.251793,0.293889,0.193217,0.906058,0.00430161,0.00789754,0.0975825,0.000192238,0.056601,2.32644,0.126922,0.52078,0.0126073,0.114972,0.00595855,0.0194026,0.01309,0.0322307,0.107429,0.00720588,0.290997,0.370925,0.873573,0.408702,0.227152,0.00497322,1.43964,2.63655e-09,0.256392,3.12425e-06,5.39707e-08,0.158315,1.56938,0.945709,1.45617,2.30289,0.0111463,0.527861,1.59532,0.0387738,0,0.235448,0.108425,1.67787,0.45232,0.458688,0.0400057,0.106263,1.47247,8.42706e-06,6.16726,0.178051,0.10807,0.0711144,0.000770207,2.80126,0.458043,0.0513655,0.245262,0.116365,0.00513664,0.0139367,0.601682,0.0237823,2.69142e-06,0.0548232,0.0518871,0.00974262,0.0101897,0.154068,0.786694,3.48015e-11,0.0617822,0.273818,0.779041,0.0756306,0.562531,0.155417,2.79352,0.184067,0.202072,0.206105,0.101975,0.115252,0.00836143,0.703672,0.262128,1.66332,0.586848,0.960796,0.0904788,6.34325,0.518406,0.432071,0.771936,0.426821,0.376616,0.172305,0.256195,0.233905,3.89729,0.991699,0.735823,0.425045,1.36795e-05,0.116902,5.77208e-12,0.208396,0.168748,0.0695724,0.290313,0.19326,0.0508969,0.855627,2.54373e-05,0.444327,0.0385645,0.0792392,0.0957297,1.23064,1.96873,0.0286378,0.0413696,9.25754e-14
}}
}}

Revision as of 17:46, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:30513115..30513119,-p@chr10:30513115..30513119
-
Mm9::chr10:39818693..39818711,-p@chr10:39818693..39818711
-
Mm9::chr10:39848767..39848811,-p@chr10:39848767..39848811
-
Mm9::chr10:45405801..45405803,+p@chr10:45405801..45405803
+
Mm9::chr10:90616594..90616601,-p@chr10:90616594..90616601
-
Mm9::chr11:4479976..4479992,-p@chr11:4479976..4479992
-
Mm9::chr11:79812743..79812747,+p@chr11:79812743..79812747
+
Mm9::chr11:84640776..84640796,-p@chr11:84640776..84640796
-
Mm9::chr11:98860541..98860554,-p@chr11:98860541..98860554
-
Mm9::chr11:98862367..98862384,-p2@Top2a
Mm9::chr11:98864356..98864385,-p@chr11:98864356..98864385
-
Mm9::chr11:98864873..98864877,-p@chr11:98864873..98864877
-
Mm9::chr12:11289162..11289182,+p@chr12:11289162..11289182
+
Mm9::chr12:27128974..27128977,-p@chr12:27128974..27128977
-
Mm9::chr12:32794247..32794251,-p@chr12:32794247..32794251
-
Mm9::chr13:35877065..35877069,+p@chr13:35877065..35877069
+
Mm9::chr13:47194740..47194755,-p@chr13:47194740..47194755
-
Mm9::chr13:47194765..47194802,-p@chr13:47194765..47194802
-
Mm9::chr13:47195573..47195584,-p@chr13:47195573..47195584
-
Mm9::chr13:47195587..47195621,-p@chr13:47195587..47195621
-
Mm9::chr13:47200976..47200990,-p@chr13:47200976..47200990
-
Mm9::chr13:47201052..47201070,-p@chr13:47201052..47201070
-
Mm9::chr14:62250725..62250730,-p1@Mir16-1
Mm9::chr14:70030753..70030755,-p@chr14:70030753..70030755
-
Mm9::chr14:70087623..70087646,-p@chr14:70087623..70087646
-
Mm9::chr14:71077141..71077147,-p@chr14:71077141..71077147
-
Mm9::chr15:57944827..57944832,-p@chr15:57944827..57944832
-
Mm9::chr15:72927352..72927367,-p@chr15:72927352..72927367
-
Mm9::chr15:9001076..9001089,+p3@1110020G09Rik
Mm9::chr16:37037961..37037975,+p@chr16:37037961..37037975
+
Mm9::chr16:91835679..91835682,+p@chr16:91835679..91835682
+
Mm9::chr17:53822268..53822273,-p@chr17:53822268..53822273
-
Mm9::chr17:5522035..5522058,+p@chr17:5522035..5522058
+
Mm9::chr17:5581012..5581016,+p@chr17:5581012..5581016
+
Mm9::chr18:57022694..57022698,-p@chr18:57022694..57022698
-
Mm9::chr19:37268555..37268557,-p@chr19:37268555..37268557
-
Mm9::chr19:37452110..37452112,+p@chr19:37452110..37452112
+
Mm9::chr19:56622612..56622617,-p2@Dclre1a
Mm9::chr19:5955605..5955609,-p@chr19:5955605..5955609
-
Mm9::chr1:161198648..161198652,+p@chr1:161198648..161198652
+
Mm9::chr1:183764684..183764700,-p@chr1:183764684..183764700
-
Mm9::chr1:71094690..71094694,-p@chr1:71094690..71094694
-
Mm9::chr1:71115541..71115549,-p@chr1:71115541..71115549
-
Mm9::chr2:30285562..30285567,+p@chr2:30285562..30285567
+
Mm9::chr2:70661468..70661472,-p@chr2:70661468..70661472
-
Mm9::chr2:72801854..72801883,-p@chr2:72801854..72801883
-
Mm9::chr2:79170988..79170993,+p@chr2:79170988..79170993
+
Mm9::chr3:104448955..104448959,+p@chr3:104448955..104448959
+
Mm9::chr3:127579639..127579648,-p@chr3:127579639..127579648
-
Mm9::chr3:134901009..134901022,+p@chr3:134901009..134901022
+
Mm9::chr3:68820009..68820030,+p3@Smc4
Mm9::chr3:68820614..68820629,+p4@Smc4
Mm9::chr3:68823173..68823185,+p8@Smc4
Mm9::chr3:68832444..68832455,+p@chr3:68832444..68832455
+
Mm9::chr3:68833317..68833336,+p@chr3:68833317..68833336
+
Mm9::chr3:68833368..68833388,+p@chr3:68833368..68833388
+
Mm9::chr3:95738724..95738759,+p@chr3:95738724..95738759
+
Mm9::chr3:95741066..95741080,+p@chr3:95741066..95741080
+
Mm9::chr3:95741826..95741843,+p@chr3:95741826..95741843
+
Mm9::chr4:11129557..11129560,+p@chr4:11129557..11129560
+
Mm9::chr4:131485673..131485699,-p@chr4:131485673..131485699
-
Mm9::chr4:131523739..131523753,-p6@Epb4.1
Mm9::chr4:131538641..131538645,-p@chr4:131538641..131538645
-
Mm9::chr4:142979588..142979615,+p1@ENSMUST00000122215
Mm9::chr4:46476724..46476765,+p@chr4:46476724..46476765
+
Mm9::chr4:46481537..46481549,+p@chr4:46481537..46481549
+
Mm9::chr4:46481551..46481574,+p@chr4:46481551..46481574
+
Mm9::chr4:46481580..46481608,+p@chr4:46481580..46481608
+
Mm9::chr4:46482784..46482816,+p@chr4:46482784..46482816
+
Mm9::chr4:46484266..46484272,+p@chr4:46484266..46484272
+
Mm9::chr4:52463728..52463738,+p@chr4:52463728..52463738
+
Mm9::chr5:108285954..108285957,-p@chr5:108285954..108285957
-
Mm9::chr5:30398904..30398908,-p@chr5:30398904..30398908
-
Mm9::chr5:8957179..8957183,+p@chr5:8957179..8957183
+
Mm9::chr6:47500969..47500980,-p@chr6:47500969..47500980
-
Mm9::chr6:47506097..47506113,-p@chr6:47506097..47506113
-
Mm9::chr6:60710187..60710209,-p@chr6:60710187..60710209
-
Mm9::chr6:88770151..88770163,+p@chr6:88770151..88770163
+
Mm9::chr7:122840702..122840734,-p@chr7:122840702..122840734
-
Mm9::chr7:125270099..125270105,-p@chr7:125270099..125270105
-
Mm9::chr7:134006938..134006958,+p6@Hirip3
Mm9::chr7:135603236..135603240,-p@chr7:135603236..135603240
-
Mm9::chr7:142884993..142885005,-p@chr7:142884993..142885005
-
Mm9::chr7:142885130..142885141,-p@chr7:142885130..142885141
-
Mm9::chr7:142886047..142886079,-p@chr7:142886047..142886079
-
Mm9::chr7:142886120..142886146,-p@chr7:142886120..142886146
-
Mm9::chr7:142886686..142886695,-p@chr7:142886686..142886695
-
Mm9::chr7:142886773..142886784,-p@chr7:142886773..142886784
-
Mm9::chr7:142887212..142887221,-p@chr7:142887212..142887221
-
Mm9::chr7:142887234..142887257,-p@chr7:142887234..142887257
-
Mm9::chr7:142887273..142887303,-p@chr7:142887273..142887303
-
Mm9::chr7:142887353..142887366,-p@chr7:142887353..142887366
-
Mm9::chr7:142887406..142887413,-p@chr7:142887406..142887413
-
Mm9::chr7:142887429..142887467,-p@chr7:142887429..142887467
-
Mm9::chr7:142887471..142887487,-p@chr7:142887471..142887487
-
Mm9::chr7:142887547..142887558,-p@chr7:142887547..142887558
-
Mm9::chr7:142887575..142887597,-p@chr7:142887575..142887597
-
Mm9::chr7:142889281..142889283,-p@chr7:142889281..142889283
-
Mm9::chr7:142889554..142889565,-p@chr7:142889554..142889565
-
Mm9::chr7:142889590..142889611,-p@chr7:142889590..142889611
-
Mm9::chr7:142889613..142889641,-p@chr7:142889613..142889641
-
Mm9::chr7:142889690..142889708,-p@chr7:142889690..142889708
-
Mm9::chr7:142889741..142889759,-p@chr7:142889741..142889759
-
Mm9::chr7:142890447..142890467,-p@chr7:142890447..142890467
-
Mm9::chr7:142890547..142890580,-p@chr7:142890547..142890580
-
Mm9::chr7:142891682..142891706,-p@chr7:142891682..142891706
-
Mm9::chr7:142891725..142891736,-p@chr7:142891725..142891736
-
Mm9::chr7:142891858..142891873,-p@chr7:142891858..142891873
-
Mm9::chr7:142892026..142892058,-p@chr7:142892026..142892058
-
Mm9::chr7:142892067..142892078,-p@chr7:142892067..142892078
-
Mm9::chr7:142892082..142892103,-p@chr7:142892082..142892103
-
Mm9::chr7:142892166..142892177,-p@chr7:142892166..142892177
-
Mm9::chr7:142892229..142892241,-p@chr7:142892229..142892241
-
Mm9::chr7:142892246..142892256,-p@chr7:142892246..142892256
-
Mm9::chr7:142892301..142892320,-p@chr7:142892301..142892320
-
Mm9::chr7:142892403..142892417,-p@chr7:142892403..142892417
-
Mm9::chr7:142892438..142892450,-p@chr7:142892438..142892450
-
Mm9::chr7:142892475..142892490,-p@chr7:142892475..142892490
-
Mm9::chr7:142892524..142892540,-p@chr7:142892524..142892540
-
Mm9::chr7:142892569..142892574,-p@chr7:142892569..142892574
-
Mm9::chr7:142892587..142892598,-p@chr7:142892587..142892598
-
Mm9::chr7:142892639..142892646,-p@chr7:142892639..142892646
-
Mm9::chr7:142892656..142892667,-p@chr7:142892656..142892667
-
Mm9::chr7:142892681..142892692,-p@chr7:142892681..142892692
-
Mm9::chr7:142892735..142892754,-p@chr7:142892735..142892754
-
Mm9::chr7:142893611..142893623,-p@chr7:142893611..142893623
-
Mm9::chr7:142893672..142893712,-p@chr7:142893672..142893712
-
Mm9::chr7:142895807..142895838,-p@chr7:142895807..142895838
-
Mm9::chr7:142895874..142895900,-p@chr7:142895874..142895900
-
Mm9::chr7:142896097..142896110,-p@chr7:142896097..142896110
-
Mm9::chr7:142896117..142896130,-p@chr7:142896117..142896130
-
Mm9::chr7:142896323..142896344,-p@chr7:142896323..142896344
-
Mm9::chr7:142896417..142896429,-p@chr7:142896417..142896429
-
Mm9::chr7:142896435..142896461,-p@chr7:142896435..142896461
-
Mm9::chr7:142897328..142897344,-p@chr7:142897328..142897344
-
Mm9::chr7:142897352..142897364,-p@chr7:142897352..142897364
-
Mm9::chr7:142897447..142897462,-p@chr7:142897447..142897462
-
Mm9::chr7:142899921..142899938,-p@chr7:142899921..142899938
-
Mm9::chr7:56122293..56122313,-p@chr7:56122293..56122313
-
Mm9::chr7:87358826..87358843,+p@chr7:87358826..87358843
+
Mm9::chr8:123012442..123012469,+p10@Gse1
Mm9::chr8:24172923..24172925,+p@chr8:24172923..24172925
+
Mm9::chr8:54687177..54687180,-p@chr8:54687177..54687180
-
Mm9::chr8:87359420..87359448,-p@chr8:87359420..87359448
-
Mm9::chr9:15130979..15131003,-p1@ENSMUST00000104206
Mm9::chr9:20730288..20730298,-p@chr9:20730288..20730298
-
Mm9::chr9:20742543..20742558,-p@chr9:20742543..20742558
-
Mm9::chr9:48127454..48127459,-p@chr9:48127454..48127459
-
Mm9::chr9:58074841..58074856,-p@chr9:58074841..58074856
-
Mm9::chr9:66293434..66293446,+p@chr9:66293434..66293446
+
Mm9::chr9:66295853..66295876,+p@chr9:66295853..66295876
+
Mm9::chr9:70489207..70489210,-p@chr9:70489207..70489210
-
Mm9::chrX:137532844..137532855,+p@chrX:137532844..137532855
+
Mm9::chrX:137585036..137585047,+p@chrX:137585036..137585047
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030261chromosome condensation0.00355085442258724
GO:0000279M phase0.00658639189895931
GO:0051301cell division0.00658639189895931
GO:0000793condensed chromosome0.00658639189895931
GO:0007059chromosome segregation0.00658639189895931
GO:0022403cell cycle phase0.00658639189895931
GO:0005694chromosome0.0125972568877554
GO:0003951NAD+ kinase activity0.015478993429088
GO:0005784translocon complex0.015478993429088
GO:0030507spectrin binding0.015478993429088
GO:0005730nucleolus0.0170289392113143
GO:0005791rough endoplasmic reticulum0.0226118251666821
GO:0030867rough endoplasmic reticulum membrane0.0226118251666821
GO:0022402cell cycle process0.0226118251666821
GO:0003918DNA topoisomerase (ATP-hydrolyzing) activity0.0244190999857556
GO:0006259DNA metabolic process0.0244190999857556
GO:0007067mitosis0.0244190999857556
GO:0000087M phase of mitotic cell cycle0.0244190999857556
GO:0040016embryonic cleavage0.0244190999857556
GO:0043232intracellular non-membrane-bound organelle0.0257644224551713
GO:0043228non-membrane-bound organelle0.0257644224551713
GO:0007049cell cycle0.0257644224551713
GO:0003916DNA topoisomerase activity0.0257644224551713
GO:0030866cortical actin cytoskeleton organization and biogenesis0.0257644224551713
GO:0006265DNA topological change0.0278194797246813
GO:0030865cortical cytoskeleton organization and biogenesis0.0296528973411352
GO:0000278mitotic cell cycle0.0296528973411352
GO:0007076mitotic chromosome condensation0.0358468670272311
GO:0000070mitotic sister chromatid segregation0.0437132389986141
GO:0000819sister chromatid segregation0.0437132389986141
GO:0006613cotranslational protein targeting to membrane0.0447134875203927
GO:0043231intracellular membrane-bound organelle0.0447134875203927
GO:0043227membrane-bound organelle0.0447134875203927
GO:0006289nucleotide-excision repair0.0476041912319939



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium8.97e-12134
foregut5.93e-1080
subdivision of trunk6.14e-0866
trunk region element1.95e-0779
immaterial anatomical entity5.52e-0779
organism subdivision8.85e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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