FFCP PHASE1:Hg19::chr10:135160870..135160906,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=118471|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23304|TSSclassifier=S|UniProt=Q96NZ9,A6XND8|association_with_transcript=26bp_to_ENST00000415747,ENST00000423766,ENST00000458230,NM_001145201,NM_145202,uc001lmp.2,uc001lmr.2_5end|coexpression_cluster_id=C211|description=CAGE_peak_1_at_PRAP1_5end|id=chr10:135160870..135160906,+|ontology_enrichment_celltype=CL:0000181!1.23e-09!12;CL:0000417!1.23e-09!12;CL:0000668!1.23e-09!12;CL:0000414!1.23e-09!12;CL:0000412!1.23e-09!12;CL:0000182!1.23e-09!12;CL:0002322!2.07e-07!5|ontology_enrichment_celltype_v019=CL:0000182;9.64e-13;12!CL:0002322;1.21e-09;5!CL:0000039;4.92e-07;7!CL:0000586;4.92e-07;7!CL:0000123;9.90e-07;2!CL:0000242;9.90e-07;2|ontology_enrichment_celltype_v019_2=CL:0000182,9.73e-13,12;CL:0002322,1.12e-09,5;CL:0000039,5.17e-07,7;CL:0000586,5.17e-07,7;CL:0000242,9.33e-07,2|ontology_enrichment_development_v019=UBERON:0004161;8.19e-14;11!UBERON:0009497;1.65e-11;13!UBERON:0003104;2.87e-10;31|ontology_enrichment_disease=DOID:3119!1.08e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009854!4.70e-12!23;UBERON:0002368!1.55e-11!35;UBERON:0002107!2.05e-11!19;UBERON:0006925!2.05e-11!19;UBERON:0008836!2.05e-11!19;UBERON:0005057!4.44e-11!26;UBERON:0008835!5.38e-11!22;UBERON:0003894!5.38e-11!22;UBERON:0009497!8.83e-11!25;UBERON:0000015!8.83e-11!25;UBERON:0002423!8.83e-11!25;UBERON:0006235!8.83e-11!25;UBERON:0004161!8.83e-11!25;UBERON:0009856!3.88e-10!26;UBERON:0000073!7.58e-10!94;UBERON:0001016!7.58e-10!94;UBERON:0007499!3.52e-09!25;UBERON:0005409!4.59e-09!35;UBERON:0004921!5.21e-09!129;UBERON:0004185!5.21e-09!129;UBERON:0005743!3.40e-08!86;UBERON:0000966!5.12e-08!5;UBERON:0005388!5.12e-08!5;UBERON:0001802!5.12e-08!5;UBERON:0000924!6.51e-08!173;UBERON:0006601!6.51e-08!173;UBERON:0000059!6.87e-08!11;UBERON:0000949!1.01e-07!45;UBERON:0002365!1.24e-07!31;UBERON:0002330!1.24e-07!31;UBERON:0001007!1.36e-07!155;UBERON:0001555!1.36e-07!155;UBERON:0007026!1.36e-07!155;UBERON:0002530!1.99e-07!59;UBERON:0005172!2.19e-07!55;UBERON:0005173!2.19e-07!55;UBERON:0004907!2.96e-07!5;UBERON:0003929!3.23e-07!54;UBERON:0007023!5.07e-07!115;UBERON:0004121!7.48e-07!169|ontology_enrichment_uberon_v019=UBERON:0000160;2.35e-19;17!UBERON:0005409;2.03e-17;22!UBERON:0002423;4.43e-16;25!UBERON:0002107;2.13e-15;19!UBERON:0006925;2.13e-15;19!UBERON:0000922;6.44e-11;49!UBERON:0002108;7.51e-11;4!UBERON:0002368;2.76e-10;33!UBERON:0004921;4.57e-10;33!UBERON:0000966;5.24e-10;5!UBERON:0005388;5.24e-10;5!UBERON:0001802;5.24e-10;5!UBERON:0000059;8.64e-10;11!UBERON:0001007;1.70e-08;81!UBERON:0002365;1.97e-08;31!UBERON:0002330;1.97e-08;31!UBERON:0000949;4.80e-07;43|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.35e-19,17;UBERON:0005409,1.21e-17,25;UBERON:0009854,1.41e-17,23;UBERON:0009497,4.79e-16,25;UBERON:0000015,4.79e-16,25;UBERON:0002423,4.79e-16,25;UBERON:0006235,4.79e-16,25;UBERON:0004161,4.79e-16,25;UBERON:0008835,1.33e-15,22;UBERON:0003894,1.33e-15,22;UBERON:0002107,2.26e-15,19;UBERON:0006925,2.26e-15,19;UBERON:0008836,2.26e-15,19;UBERON:0009856,3.22e-15,26;UBERON:0007499,1.99e-13,25;UBERON:0005172,3.29e-11,54;UBERON:0005173,3.29e-11,54;UBERON:0002108,7.80e-11,4;UBERON:0002368,1.98e-10,35;UBERON:0000059,8.44e-10,11;UBERON:0002417,1.06e-09,60;UBERON:0000916,1.06e-09,60;UBERON:0004921,3.26e-09,118;UBERON:0002365,1.39e-08,31;UBERON:0002330,1.39e-08,31;UBERON:0000966,2.33e-08,6;UBERON:0005388,2.33e-08,6;UBERON:0001802,2.33e-08,6;UBERON:0000949,1.58e-07,45;UBERON:0011216,2.81e-07,223;UBERON:0001007,3.13e-07,145;UBERON:0001555,3.13e-07,145;UBERON:0007026,3.13e-07,145;UBERON:0003929,3.81e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,77.5396126946459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,0.132529768321485,5.46111531486736,2.17688215532278,6.81266297364197,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,1.2347220339942,0,917.706452110055,476.671200088649,149.469846390395,0,39.7252656494257,0,0,0,0,0.185176890317059,0,1.03993478527958,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,4.616102252095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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=118471 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23304 | |||
|TSSclassifier=S | |||
|UniProt=Q96NZ9,A6XND8 | |||
|association_with_transcript=26bp_to_ENST00000415747,ENST00000423766,ENST00000458230,NM_001145201,NM_145202,uc001lmp.2,uc001lmr.2_5end | |||
|coexpression_cluster_id=C211 | |||
|description=CAGE_peak_1_at_PRAP1_5end | |||
|id=chr10:135160870..135160906,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.23e-09!12;CL:0000417!1.23e-09!12;CL:0000668!1.23e-09!12;CL:0000414!1.23e-09!12;CL:0000412!1.23e-09!12;CL:0000182!1.23e-09!12;CL:0002322!2.07e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000182;9.64e-13;12!CL:0002322;1.21e-09;5!CL:0000039;4.92e-07;7!CL:0000586;4.92e-07;7!CL:0000123;9.90e-07;2!CL:0000242;9.90e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,9.73e-13,12;CL:0002322,1.12e-09,5;CL:0000039,5.17e-07,7;CL:0000586,5.17e-07,7;CL:0000242,9.33e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;8.19e-14;11!UBERON:0009497;1.65e-11;13!UBERON:0003104;2.87e-10;31 | |||
|ontology_enrichment_disease=DOID:3119!1.08e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!4.70e-12!23;UBERON:0002368!1.55e-11!35;UBERON:0002107!2.05e-11!19;UBERON:0006925!2.05e-11!19;UBERON:0008836!2.05e-11!19;UBERON:0005057!4.44e-11!26;UBERON:0008835!5.38e-11!22;UBERON:0003894!5.38e-11!22;UBERON:0009497!8.83e-11!25;UBERON:0000015!8.83e-11!25;UBERON:0002423!8.83e-11!25;UBERON:0006235!8.83e-11!25;UBERON:0004161!8.83e-11!25;UBERON:0009856!3.88e-10!26;UBERON:0000073!7.58e-10!94;UBERON:0001016!7.58e-10!94;UBERON:0007499!3.52e-09!25;UBERON:0005409!4.59e-09!35;UBERON:0004921!5.21e-09!129;UBERON:0004185!5.21e-09!129;UBERON:0005743!3.40e-08!86;UBERON:0000966!5.12e-08!5;UBERON:0005388!5.12e-08!5;UBERON:0001802!5.12e-08!5;UBERON:0000924!6.51e-08!173;UBERON:0006601!6.51e-08!173;UBERON:0000059!6.87e-08!11;UBERON:0000949!1.01e-07!45;UBERON:0002365!1.24e-07!31;UBERON:0002330!1.24e-07!31;UBERON:0001007!1.36e-07!155;UBERON:0001555!1.36e-07!155;UBERON:0007026!1.36e-07!155;UBERON:0002530!1.99e-07!59;UBERON:0005172!2.19e-07!55;UBERON:0005173!2.19e-07!55;UBERON:0004907!2.96e-07!5;UBERON:0003929!3.23e-07!54;UBERON:0007023!5.07e-07!115;UBERON:0004121!7.48e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.35e-19;17!UBERON:0005409;2.03e-17;22!UBERON:0002423;4.43e-16;25!UBERON:0002107;2.13e-15;19!UBERON:0006925;2.13e-15;19!UBERON:0000922;6.44e-11;49!UBERON:0002108;7.51e-11;4!UBERON:0002368;2.76e-10;33!UBERON:0004921;4.57e-10;33!UBERON:0000966;5.24e-10;5!UBERON:0005388;5.24e-10;5!UBERON:0001802;5.24e-10;5!UBERON:0000059;8.64e-10;11!UBERON:0001007;1.70e-08;81!UBERON:0002365;1.97e-08;31!UBERON:0002330;1.97e-08;31!UBERON:0000949;4.80e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.35e-19,17;UBERON:0005409,1.21e-17,25;UBERON:0009854,1.41e-17,23;UBERON:0009497,4.79e-16,25;UBERON:0000015,4.79e-16,25;UBERON:0002423,4.79e-16,25;UBERON:0006235,4.79e-16,25;UBERON:0004161,4.79e-16,25;UBERON:0008835,1.33e-15,22;UBERON:0003894,1.33e-15,22;UBERON:0002107,2.26e-15,19;UBERON:0006925,2.26e-15,19;UBERON:0008836,2.26e-15,19;UBERON:0009856,3.22e-15,26;UBERON:0007499,1.99e-13,25;UBERON:0005172,3.29e-11,54;UBERON:0005173,3.29e-11,54;UBERON:0002108,7.80e-11,4;UBERON:0002368,1.98e-10,35;UBERON:0000059,8.44e-10,11;UBERON:0002417,1.06e-09,60;UBERON:0000916,1.06e-09,60;UBERON:0004921,3.26e-09,118;UBERON:0002365,1.39e-08,31;UBERON:0002330,1.39e-08,31;UBERON:0000966,2.33e-08,6;UBERON:0005388,2.33e-08,6;UBERON:0001802,2.33e-08,6;UBERON:0000949,1.58e-07,45;UBERON:0011216,2.81e-07,223;UBERON:0001007,3.13e-07,145;UBERON:0001555,3.13e-07,145;UBERON:0007026,3.13e-07,145;UBERON:0003929,3.81e-07,54 | |||
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|short_description=p1@PRAP1 | |||
}} |
Revision as of 12:29, 10 September 2013
Short description: | p1@PRAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PRAP1_5end |
Coexpression cluster: | C211_small_Hepatocyte_liver_colon_temporal_duodenum_kidney |
Association with transcript: | 26bp_to_ENST00000415747, ENST00000423766, ENST00000458230, NM_001145201, NM_145202, uc001lmp.2, uc001lmr.2_5end |
EntrezGene: | PRAP1 |
HGNC: | 23304 |
UniProt: | Q96NZ9A6XND8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 9.73e-13 | 12 |
embryonic stem cell | 1.12e-09 | 5 |
germ line cell | 5.17e-07 | 7 |
germ cell | 5.17e-07 | 7 |
Merkel cell | 9.33e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.35e-19 | 17 |
gastrointestinal system | 1.21e-17 | 25 |
digestive tract diverticulum | 1.41e-17 | 23 |
epithelium of foregut-midgut junction | 4.79e-16 | 25 |
anatomical boundary | 4.79e-16 | 25 |
hepatobiliary system | 4.79e-16 | 25 |
foregut-midgut junction | 4.79e-16 | 25 |
septum transversum | 4.79e-16 | 25 |
hepatic diverticulum | 1.33e-15 | 22 |
liver primordium | 1.33e-15 | 22 |
liver | 2.26e-15 | 19 |
digestive gland | 2.26e-15 | 19 |
liver bud | 2.26e-15 | 19 |
sac | 3.22e-15 | 26 |
epithelial sac | 1.99e-13 | 25 |
abdomen element | 3.29e-11 | 54 |
abdominal segment element | 3.29e-11 | 54 |
small intestine | 7.80e-11 | 4 |
endocrine gland | 1.98e-10 | 35 |
large intestine | 8.44e-10 | 11 |
abdominal segment of trunk | 1.06e-09 | 60 |
abdomen | 1.06e-09 | 60 |
subdivision of digestive tract | 3.26e-09 | 118 |
exocrine gland | 1.39e-08 | 31 |
exocrine system | 1.39e-08 | 31 |
retina | 2.33e-08 | 6 |
photoreceptor array | 2.33e-08 | 6 |
posterior segment of eyeball | 2.33e-08 | 6 |
endocrine system | 1.58e-07 | 45 |
organ system subdivision | 2.81e-07 | 223 |
digestive system | 3.13e-07 | 145 |
digestive tract | 3.13e-07 | 145 |
primitive gut | 3.13e-07 | 145 |
gut epithelium | 3.81e-07 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.