FFCP PHASE1:Hg19::chr12:14996355..14996441,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=420|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=726|TSSclassifier=S|UniProt=Q93070,A8K6J7,Q3KZ25,Q3KZ30|association_with_transcript=0bp_to_ENST00000228936,NM_021071,uc001rcl.1,uc001rcm.1,uc009zid.1,uc009zie.1_5end|coexpression_cluster_id=C68|description=CAGE_peak_1_at_ART4_5end|id=chr12:14996355..14996441,-|ontology_enrichment_celltype=CL:0002139!7.16e-17!24;CL:0000071!6.52e-14!18;CL:0002546!6.52e-14!18;CL:0000115!1.35e-12!35;CL:0002078!6.40e-12!44;CL:1000413!6.49e-08!9;CL:0000213!3.67e-07!57;CL:0000215!3.67e-07!57;CL:0002548!3.87e-07!6|ontology_enrichment_celltype_v019=CL:0002139;3.62e-21;24!CL:0000071;8.58e-19;18!CL:0000115;3.20e-13;36!CL:1000413;1.55e-10;9!CL:0002078;1.04e-09;45!CL:0000349;4.06e-09;19!CL:0002548;4.57e-09;6!CL:0000182;6.40e-07;12|ontology_enrichment_celltype_v019_2=CL:0002139,2.46e-21,24;CL:0000071,5.82e-19,18;CL:0002546,5.82e-19,18;CL:0000115,2.86e-16,36;CL:0002078,5.22e-14,45;CL:1000413,1.64e-10,9;CL:0002548,3.08e-09,6;CL:0000349,4.21e-09,19;CL:0000213,1.87e-08,58;CL:0000215,1.87e-08,58;CL:0000182,7.35e-07,12|ontology_enrichment_development_v019=CL:0002546;8.58e-19;18!UBERON:0004872;5.11e-08;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004872!5.33e-32!84;UBERON:0003914!2.16e-30!118;UBERON:0001009!9.47e-26!113;UBERON:0004535!1.21e-23!110;UBERON:0000055!6.73e-21!69;UBERON:0004111!3.75e-20!241;UBERON:0002049!8.22e-20!79;UBERON:0007798!8.22e-20!79;UBERON:0001981!1.47e-19!60;UBERON:0007500!1.47e-19!60;UBERON:0004537!1.47e-19!60;UBERON:0006965!1.47e-19!60;UBERON:0007023!9.11e-19!115;UBERON:0000477!1.00e-18!286;UBERON:0000025!3.23e-18!194;UBERON:0000490!1.60e-14!138;UBERON:0001986!6.52e-14!18;UBERON:0004638!6.52e-14!18;UBERON:0004852!6.52e-14!18;UBERON:0007100!1.57e-13!27;UBERON:0004923!2.19e-12!57;UBERON:0005057!6.73e-12!26;UBERON:0005631!6.81e-12!14;UBERON:0000158!6.81e-12!14;UBERON:0002107!1.20e-11!19;UBERON:0006925!1.20e-11!19;UBERON:0008836!1.20e-11!19;UBERON:0000483!1.26e-11!309;UBERON:0000487!1.30e-11!22;UBERON:0000119!3.12e-11!312;UBERON:0000948!3.68e-11!24;UBERON:0005498!3.68e-11!24;UBERON:0004140!3.68e-11!24;UBERON:0009881!3.68e-11!24;UBERON:0004141!3.68e-11!24;UBERON:0003084!3.68e-11!24;UBERON:0007005!3.68e-11!24;UBERON:0004139!3.68e-11!24;UBERON:0004291!3.68e-11!24;UBERON:0000468!5.13e-11!659;UBERON:0006914!1.52e-10!25;UBERON:0002417!2.40e-10!61;UBERON:0000916!2.40e-10!61;UBERON:0009854!5.17e-10!23;UBERON:0001637!7.54e-10!42;UBERON:0003509!7.54e-10!42;UBERON:0004572!7.54e-10!42;UBERON:0009497!8.58e-10!25;UBERON:0000015!8.58e-10!25;UBERON:0002423!8.58e-10!25;UBERON:0006235!8.58e-10!25;UBERON:0004161!8.58e-10!25;UBERON:0002368!1.40e-09!35;UBERON:0000926!1.48e-09!448;UBERON:0004120!1.48e-09!448;UBERON:0006603!1.48e-09!448;UBERON:0002365!2.31e-09!31;UBERON:0002330!2.31e-09!31;UBERON:0008835!2.44e-09!22;UBERON:0003894!2.44e-09!22;UBERON:0003124!2.90e-09!7;UBERON:0009856!2.93e-09!26;UBERON:0009569!3.40e-09!113;UBERON:0000467!6.10e-09!625;UBERON:0000480!7.51e-09!626;UBERON:0007499!1.28e-08!25;UBERON:0003915!6.49e-08!9;UBERON:0004700!6.49e-08!9;UBERON:0001917!6.49e-08!9;UBERON:0002530!9.10e-08!59;UBERON:0003081!1.10e-07!216;UBERON:0000949!2.77e-07!45;UBERON:0005172!2.95e-07!55;UBERON:0005173!2.95e-07!55;UBERON:0003103!3.36e-07!69;UBERON:0003929!5.06e-07!54;UBERON:0002100!5.42e-07!216|ontology_enrichment_uberon_v019=UBERON:0004638;8.58e-19;18!UBERON:0001986;8.58e-19;18!UBERON:0004852;8.58e-19;18!UBERON:0000487;1.80e-14;22!UBERON:0007100;6.20e-14;25!UBERON:0002107;1.25e-12;19!UBERON:0006925;1.25e-12;19!UBERON:0006914;3.70e-12;25!UBERON:0000948;5.66e-11;22!UBERON:0005631;1.19e-10;10!UBERON:0000158;1.19e-10;10!UBERON:0000055;1.30e-10;65!UBERON:0003915;1.55e-10;9!UBERON:0004700;1.55e-10;9!UBERON:0001917;1.55e-10;9!UBERON:0002423;4.52e-10;25!UBERON:0000478;1.91e-09;24!UBERON:0007500;2.23e-09;56!UBERON:0001981;2.23e-09;56!UBERON:0004537;2.23e-09;56!UBERON:0000490;1.02e-08;33!UBERON:0002368;2.56e-08;33!UBERON:0001637;8.49e-08;42!UBERON:0003509;8.49e-08;42!UBERON:0004572;8.49e-08;42!UBERON:0001987;2.22e-07;4!UBERON:0001009;2.94e-07;112!UBERON:0002365;3.01e-07;31!UBERON:0002330;3.01e-07;31!UBERON:0004535;7.73e-07;109|ontology_enrichment_uberon_v019_2=UBERON:0004872,8.76e-33,83;UBERON:0003914,3.05e-31,117;UBERON:0001009,8.38e-24,112;UBERON:0004535,2.52e-21,109;UBERON:0000055,6.80e-20,68;UBERON:0004638,5.82e-19,18;UBERON:0001986,5.82e-19,18;UBERON:0004852,5.82e-19,18;UBERON:0007500,1.53e-18,59;UBERON:0001981,1.53e-18,59;UBERON:0004537,1.53e-18,59;UBERON:0006965,1.53e-18,59;UBERON:0002049,6.08e-18,78;UBERON:0007798,6.08e-18,78;UBERON:0005631,3.38e-16,14;UBERON:0000158,3.38e-16,14;UBERON:0007100,1.24e-14,27;UBERON:0000487,1.33e-14,22;UBERON:0000025,1.76e-14,192;UBERON:0004111,2.30e-14,240;UBERON:0004923,5.19e-13,66;UBERON:0002107,1.29e-12,19;UBERON:0006925,1.29e-12,19;UBERON:0008836,1.29e-12,19;UBERON:0006914,2.85e-12,25;UBERON:0003124,3.75e-12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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=420 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=726 | |||
|TSSclassifier=S | |||
|UniProt=Q93070,A8K6J7,Q3KZ25,Q3KZ30 | |||
|association_with_transcript=0bp_to_ENST00000228936,NM_021071,uc001rcl.1,uc001rcm.1,uc009zid.1,uc009zie.1_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_1_at_ART4_5end | |||
|id=chr12:14996355..14996441,- | |||
|ontology_enrichment_celltype=CL:0002139!7.16e-17!24;CL:0000071!6.52e-14!18;CL:0002546!6.52e-14!18;CL:0000115!1.35e-12!35;CL:0002078!6.40e-12!44;CL:1000413!6.49e-08!9;CL:0000213!3.67e-07!57;CL:0000215!3.67e-07!57;CL:0002548!3.87e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.62e-21;24!CL:0000071;8.58e-19;18!CL:0000115;3.20e-13;36!CL:1000413;1.55e-10;9!CL:0002078;1.04e-09;45!CL:0000349;4.06e-09;19!CL:0002548;4.57e-09;6!CL:0000182;6.40e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.46e-21,24;CL:0000071,5.82e-19,18;CL:0002546,5.82e-19,18;CL:0000115,2.86e-16,36;CL:0002078,5.22e-14,45;CL:1000413,1.64e-10,9;CL:0002548,3.08e-09,6;CL:0000349,4.21e-09,19;CL:0000213,1.87e-08,58;CL:0000215,1.87e-08,58;CL:0000182,7.35e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;8.58e-19;18!UBERON:0004872;5.11e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;8.58e-19;18!UBERON:0001986;8.58e-19;18!UBERON:0004852;8.58e-19;18!UBERON:0000487;1.80e-14;22!UBERON:0007100;6.20e-14;25!UBERON:0002107;1.25e-12;19!UBERON:0006925;1.25e-12;19!UBERON:0006914;3.70e-12;25!UBERON:0000948;5.66e-11;22!UBERON:0005631;1.19e-10;10!UBERON:0000158;1.19e-10;10!UBERON:0000055;1.30e-10;65!UBERON:0003915;1.55e-10;9!UBERON:0004700;1.55e-10;9!UBERON:0001917;1.55e-10;9!UBERON:0002423;4.52e-10;25!UBERON:0000478;1.91e-09;24!UBERON:0007500;2.23e-09;56!UBERON:0001981;2.23e-09;56!UBERON:0004537;2.23e-09;56!UBERON:0000490;1.02e-08;33!UBERON:0002368;2.56e-08;33!UBERON:0001637;8.49e-08;42!UBERON:0003509;8.49e-08;42!UBERON:0004572;8.49e-08;42!UBERON:0001987;2.22e-07;4!UBERON:0001009;2.94e-07;112!UBERON:0002365;3.01e-07;31!UBERON:0002330;3.01e-07;31!UBERON:0004535;7.73e-07;109 | |||
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|phase1_expression=0.908391896352783,0.214100523890983,25.5127471413708,5.00366491765652,9.38618298297304,0.872338524100369,0,0,0,0.737201809504527,0,13.1064823278103,6.06664049925443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3806866313962,7.37770945674,15.2156448593801,0,0,0,0,0,0,0,0.175669571386252,1.11332214173056,0,0,0,0,0,0,0,0,6.16163462836786,6.02164216574287,5.9013885273291,14.1326985481002,18.8774746294458,6.05259692268148,7.31482382878837,0,0.71153252537342,3.3472061276467,10.0707329277287,17.4862584315258,9.27435818683044,5.14728312484216,0,14.3772562537368,5.61323431565425,4.61707069981621,0,1.89853131913626,1.64881569537367,0,0,0,0,6.33152558322899,1.85372853138506,3.15520282823695,1.06400514659507,2.80338800071154,8.5399196583764,1.97334038733728,17.7390290177867,9.56445771694785,11.769257024169,0,0,0,0,1.1409436430889,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6327516276427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,2.8810180793198,2.94017422771084,21.5483559197112,7.86261773342101,17.7236972004421,0,12.6678091699407,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,9.81691844775302,2.31492756288305,13.8885531131257,5.53143078571493,1.71697232418975,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.29103172095849,0,0,0,4.97548728239564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3376131436354,21.6366071363646,10.2812699732091,0,0,0,2.30650468660262,0.511707249066704,1.12597744800525,1.48418066444991,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,1.72732732881711,1.54227252690289,0,0,0,0,0,93.84322720446,79.9992480136196,0,0,0,23.2872686323852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,1.29726953372744,12.5949900332952,0,1.58189712359363,1.14378116354295,0,0,0,1.56989728039846,0,0,0,0.606547444719948,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0.551365343546124,1.99031692572366,0,0,0,6.29022168584383,0.6196469961995,0,0.573645408816206,0.294747123039363,4.280052617775,0,0.211107635297664,0,0,0,0,0,0,25.6071138112839,0,0,0,0,0,1.52927441428475,0,0,0.411362273086194,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,4.59774653409171,0,0,0,1.31857361344705,0,0,0,50.3750862796526,27.3207506366028,48.8385516337779,0,0.140669416410513,0,0,0,7.77067154179172,1.93398740871803,0,0,0,0,0,0,0,1.28236427328014,0,0,0.969332746095218,0.185536196323703,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,1.46205491157214,0,1.1528195219403,0.0897576444097721,0,95.3813467598439,23.6321790976805,122.597998484286,0,0,0.498635045700469,0,0,0,0.569261198172555,1.74830236878417,0,0,0.141353071433941,0,0,1.32686346755009,1.22206028986725,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,1.57833761139756,1.20990716048664,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0,0,4.19344003780872,0,0,0,0,3.29762656060626,0,0,0,0,0,0.195551382734803,0,3.84215390530835,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,1.28929632425987,0,17.8740736814243,4.35404805622199,13.6395874669595,1.99679000498991,7.2968428183217,5.80245789348869,3.76227445925667,0.720599767084807,0,5.75117230842733,5.68669422830049,5.45968705218898,1.08270229666224,0,0,0,0,0,0,0,0,0.0607495566580247,0,4.3343139014559,0.524545881349981,0.316801009558219,0,0,0.714695326373367,4.63464379255802,0,0,0,0,0,0.492555124496034,0,0,18.4655814434384,10.6005511129777,0.129282956361551,0,0,0,1.9221734262185,2.67247318669432,2.48543433208317,12.4041505452988,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,3.27453711692416,0.214441591374926,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0,1.0529445968896,0,0.781514011233092,0.261906694481422,0,0,0,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0,0,0,0.455324382702595,12.5957365630947,0,0.857440047187092,0,0,0,0,0.470958557103084,0,0,0.913158720509496,0,0,0,0,8.36938262650502,0,0,0.207216164163037,0,2.07377898544228,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,1.29485767437579,1.53994210284371,0,0.485710993059139,0,0,0,0,0,0,0.926089897295336,1.74847648403166,0,1.47088993052343,0,0.196308467114945,0,0,0,15.6953143026355,13.4072406985041,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.0679914901909147,0,1.0580536810308,0,0,0,0,0,0,0.203977659483963,0,0,0,1.51557396436479,0,0,0,5.11761556562354,1.1903221573187,0.129177819672012,0.372448285775147,0,4.45530107947154,1.61693751166575,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| |||
|short_description=p1@ART4 | |||
}} |
Revision as of 21:55, 10 September 2013
Short description: | p1@ART4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ART4_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000228936, NM_021071, uc001rcl.1, uc001rcm.1, uc009zid.1, uc009zie.1_5end |
EntrezGene: | ART4 |
HGNC: | 726 |
UniProt: | Q93070A8K6J7Q3KZ25Q3KZ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.46e-21 | 24 |
blood vessel endothelial cell | 5.82e-19 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.82e-19 | 18 |
endothelial cell | 2.86e-16 | 36 |
meso-epithelial cell | 5.22e-14 | 45 |
endothelial cell of artery | 1.64e-10 | 9 |
cardiac fibroblast | 3.08e-09 | 6 |
extraembryonic cell | 4.21e-09 | 19 |
lining cell | 1.87e-08 | 58 |
barrier cell | 1.87e-08 | 58 |
hepatocyte | 7.35e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.