FFCP PHASE1:Hg19::chr12:6575455..6575468,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6843|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12642|TSSclassifier=N|UniProt=|association_with_transcript=-17bp_to_ENST00000538970_5end|description=CAGE_peak_4_at_VAMP1_5end|id=chr12:6575455..6575468,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000785;1.58e-07;1!CL:0000819;1.58e-07;1|ontology_enrichment_celltype_v019_2=CL:0000819,1.01e-07,1|ontology_enrichment_development_v019=UBERON:0006241;9.51e-10;3!UBERON:0003057;9.51e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;1.77e-09;3!DOID:127;1.77e-09;3!DOID:0060073;1.58e-07;1!DOID:8675;1.58e-07;1!DOID:0060072;2.59e-07;4|ontology_enrichment_disease_v019_2=DOID:0060084,1.09e-09,3;DOID:127,1.09e-09,3;DOID:0060073,1.01e-07,1;DOID:8675,1.01e-07,1;DOID:0060072,1.80e-07,4|ontology_enrichment_uberon=UBERON:0001049!2.63e-13!57;UBERON:0005068!2.63e-13!57;UBERON:0006241!2.63e-13!57;UBERON:0007135!2.63e-13!57;UBERON:0002616!3.94e-11!59;UBERON:0007023!4.12e-11!115;UBERON:0001017!2.56e-10!82;UBERON:0000955!1.03e-09!69;UBERON:0006238!1.03e-09!69;UBERON:0005743!1.25e-09!86;UBERON:0003076!3.42e-08!15;UBERON:0003057!3.42e-08!15;UBERON:0002020!5.71e-08!34;UBERON:0003528!5.71e-08!34;UBERON:0002780!8.52e-08!41;UBERON:0001890!8.52e-08!41;UBERON:0006240!8.52e-08!41;UBERON:0001893!9.37e-08!34;UBERON:0000073!1.89e-07!94;UBERON:0001016!1.89e-07!94;UBERON:0003080!2.00e-07!42;UBERON:0003075!2.14e-07!86;UBERON:0007284!2.14e-07!86;UBERON:0004733!2.93e-07!12;UBERON:0002028!2.93e-07!12;UBERON:0007277!2.93e-07!12;UBERON:0002791!3.96e-07!33;UBERON:0001950!4.09e-07!20;UBERON:0002619!5.20e-07!22;UBERON:0002346!5.33e-07!90;UBERON:0001869!7.23e-07!32|ontology_enrichment_uberon_v019=UBERON:0002148;2.23e-13;2!UBERON:0006331;2.23e-13;2!UBERON:0009662;2.23e-13;2!UBERON:0001950;2.14e-10;20!UBERON:0000200;3.94e-10;6!UBERON:0002298;7.30e-10;6!UBERON:0002240;9.51e-10;3!UBERON:0005174;9.51e-10;3!UBERON:0001137;9.51e-10;3!UBERON:0002619;1.92e-09;22!UBERON:0000988;3.25e-09;3!UBERON:0001869;8.92e-09;32!UBERON:0004733;1.92e-08;12!UBERON:0002028;1.92e-08;12!UBERON:0000956;2.74e-08;25!UBERON:0000203;2.74e-08;25!UBERON:0001017;2.81e-08;75!UBERON:0003528;3.20e-08;34!UBERON:0002020;3.20e-08;34!UBERON:0004732;8.40e-08;13!UBERON:0001893;1.44e-07;34!UBERON:0002581;1.58e-07;1!UBERON:0007190;1.58e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.60e-16,56;UBERON:0005068,3.60e-16,56;UBERON:0006241,3.60e-16,56;UBERON:0007135,3.60e-16,56;UBERON:0003076,6.13e-15,15;UBERON:0003057,6.13e-15,15;UBERON:0001017,4.61e-14,81;UBERON:0002148,9.83e-14,2;UBERON:0006331,9.83e-14,2;UBERON:0009662,9.83e-14,2;UBERON:0000955,1.32e-12,68;UBERON:0006238,1.32e-12,68;UBERON:0001016,2.16e-12,89;UBERON:0000073,4.74e-12,53;UBERON:0002616,4.74e-12,53;UBERON:0003075,4.82e-12,82;UBERON:0007284,4.82e-12,82;UBERON:0002346,2.31e-11,86;UBERON:0010371,1.82e-10,104;UBERON:0003528,2.12e-10,34;UBERON:0002020,2.12e-10,34;UBERON:0001950,2.59e-10,20;UBERON:0002298,3.83e-10,6;UBERON:0000200,4.91e-10,6;UBERON:0002240,9.54e-10,3;UBERON:0005174,9.54e-10,3;UBERON:0001137,9.54e-10,3;UBERON:0000988,1.89e-09,3;UBERON:0007023,2.22e-09,114;UBERON:0002619,2.28e-09,22;UBERON:0004733,1.14e-08,12;UBERON:0002028,1.14e-08,12;UBERON:0007277,1.14e-08,12;UBERON:0001869,1.84e-08,32;UBERON:0000956,3.18e-08,25;UBERON:0000203,3.18e-08,25;UBERON:0004732,5.22e-08,13;UBERON:0001893,6.28e-08,34;UBERON:0010314,1.18e-07,132;UBERON:0002581,1.48e-07,1;UBERON:0007190,2.63e-07,1;UBERON:0004121,5.29e-07,171;UBERON:0000924,5.29e-07,171;UBERON:0006601,5.29e-07,171;UBERON:0002680,6.99e-07,9;UBERON:0001895,6.99e-07,9;UBERON:0010092,6.99e-07,9|phase1_expression=0,0.428201047781966,0,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0.305653622991805,0.246301768349837,0.236132343941038,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0.568676929949686,0,0,0.401088894940283,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0,0,0.224723484445085,0.306083892370903,0,0.639337125799041,0,0,0.426224750532694,0,0,0,0.502497330513487,0,0.217188844705117,0,0,0,0,0,0,0,0.300353785683013,0,0,0.19891667719909,0,0,0,0.889509253863555,0,0.400395987036012,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0.786021525498329,0.616804496998528,0.167186495390678,0,0,0,0,1.17842362989935,0,0.270803863765016,0.512365278902701,0.390178042679635,0.493313713811028,0,0.869409257205157,0.889719378972363,0.267540828089713,0,0.339928028092699,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0,2.40696176205157,0.434473211648397,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0.132957960518865,0.238490624305342,1.14398982156026,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1634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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6843 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12642 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENST00000538970_5end | |||
|description=CAGE_peak_4_at_VAMP1_5end | |||
|id=chr12:6575455..6575468,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000785;1.58e-07;1!CL:0000819;1.58e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,1.01e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.51e-10;3!UBERON:0003057;9.51e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.77e-09;3!DOID:127;1.77e-09;3!DOID:0060073;1.58e-07;1!DOID:8675;1.58e-07;1!DOID:0060072;2.59e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.09e-09,3;DOID:127,1.09e-09,3;DOID:0060073,1.01e-07,1;DOID:8675,1.01e-07,1;DOID:0060072,1.80e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.63e-13!57;UBERON:0005068!2.63e-13!57;UBERON:0006241!2.63e-13!57;UBERON:0007135!2.63e-13!57;UBERON:0002616!3.94e-11!59;UBERON:0007023!4.12e-11!115;UBERON:0001017!2.56e-10!82;UBERON:0000955!1.03e-09!69;UBERON:0006238!1.03e-09!69;UBERON:0005743!1.25e-09!86;UBERON:0003076!3.42e-08!15;UBERON:0003057!3.42e-08!15;UBERON:0002020!5.71e-08!34;UBERON:0003528!5.71e-08!34;UBERON:0002780!8.52e-08!41;UBERON:0001890!8.52e-08!41;UBERON:0006240!8.52e-08!41;UBERON:0001893!9.37e-08!34;UBERON:0000073!1.89e-07!94;UBERON:0001016!1.89e-07!94;UBERON:0003080!2.00e-07!42;UBERON:0003075!2.14e-07!86;UBERON:0007284!2.14e-07!86;UBERON:0004733!2.93e-07!12;UBERON:0002028!2.93e-07!12;UBERON:0007277!2.93e-07!12;UBERON:0002791!3.96e-07!33;UBERON:0001950!4.09e-07!20;UBERON:0002619!5.20e-07!22;UBERON:0002346!5.33e-07!90;UBERON:0001869!7.23e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002148;2.23e-13;2!UBERON:0006331;2.23e-13;2!UBERON:0009662;2.23e-13;2!UBERON:0001950;2.14e-10;20!UBERON:0000200;3.94e-10;6!UBERON:0002298;7.30e-10;6!UBERON:0002240;9.51e-10;3!UBERON:0005174;9.51e-10;3!UBERON:0001137;9.51e-10;3!UBERON:0002619;1.92e-09;22!UBERON:0000988;3.25e-09;3!UBERON:0001869;8.92e-09;32!UBERON:0004733;1.92e-08;12!UBERON:0002028;1.92e-08;12!UBERON:0000956;2.74e-08;25!UBERON:0000203;2.74e-08;25!UBERON:0001017;2.81e-08;75!UBERON:0003528;3.20e-08;34!UBERON:0002020;3.20e-08;34!UBERON:0004732;8.40e-08;13!UBERON:0001893;1.44e-07;34!UBERON:0002581;1.58e-07;1!UBERON:0007190;1.58e-07;1 | |||
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| |||
|short_description=p4@VAMP1 | |||
}} |
Revision as of 23:57, 10 September 2013
Short description: | p4@VAMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_VAMP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENST00000538970_5end |
EntrezGene: | VAMP1 |
HGNC: | 12642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 1.01e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.09e-09 | 3 |
leiomyoma | 1.09e-09 | 3 |
lymphatic system cancer | 1.01e-07 | 1 |
lymphosarcoma | 1.01e-07 | 1 |
benign neoplasm | 1.80e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.