FFCP PHASE1:Hg19::chr17:45933057..45933064,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80320|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14530|TSSclassifier=W|UniProt=Q3SY56,B3KXP2|association_with_transcript=175bp_to_ENST00000342234,NM_199262,uc002imh.1_5end|coexpression_cluster_id=C514|description=CAGE_peak_3_at_SP6_5end|id=chr17:45933057..45933064,-|ontology_enrichment_celltype=CL:0002139!3.25e-07!24|ontology_enrichment_celltype_v019=CL:0002138;8.03e-20;6!CL:0002144;1.86e-17;3!CL:0002139;4.02e-13;24!CL:0000115;1.68e-07;36!CL:0000047;1.99e-07;2|ontology_enrichment_celltype_v019_2=CL:0005020,8.04e-20,6;CL:0002138,8.04e-20,6;CL:0005022,8.04e-20,6;CL:0002144,2.30e-17,3;CL:0002139,4.29e-13,24;CL:0000115,1.05e-08,36;CL:0002078,6.09e-07,45|ontology_enrichment_development_v019=CL:0005022;8.03e-20;6!UBERON:0003124;1.42e-13;1!UBERON:0005062;1.72e-13;4!UBERON:0007284;1.72e-13;4!UBERON:0004872;6.29e-08;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;1.99e-07;2|ontology_enrichment_disease_v019_2=DOID:114,1.87e-07,2|ontology_enrichment_uberon=UBERON:0007023!1.31e-14!115;UBERON:0003978!4.47e-10!3;UBERON:0009751!4.47e-10!3;UBERON:0000946!4.47e-10!3;UBERON:0002523!4.47e-10!3;UBERON:0005983!4.47e-10!3;UBERON:0002165!4.47e-10!3;UBERON:0002062!4.47e-10!3;UBERON:0007280!4.47e-10!3;UBERON:0009722!1.50e-08!11;UBERON:0007690!1.50e-08!11;UBERON:0002465!1.03e-07!10;UBERON:0002133!1.26e-07!2|ontology_enrichment_uberon_v019=UBERON:0002133;5.96e-26;2!UBERON:0003978;1.18e-17;3!UBERON:0000946;1.18e-17;3!UBERON:0010523;1.86e-17;3!UBERON:0001915;1.86e-17;3!UBERON:0001982;1.86e-17;3!UBERON:0001473;5.00e-15;8!UBERON:0004536;5.00e-15;8!UBERON:0006558;5.00e-15;8!UBERON:0002135;7.08e-14;1!UBERON:0002134;7.08e-14;1!UBERON:0002171;7.08e-14;1!UBERON:0005208;7.08e-14;1!UBERON:0006518;7.08e-14;1!UBERON:0008949;7.08e-14;1!UBERON:0004145;7.08e-14;1!UBERON:0005946;7.08e-14;1!UBERON:0000101;7.08e-14;1!UBERON:0005965;7.08e-14;1!UBERON:0002167;7.08e-14;1!UBERON:0002078;7.08e-14;1!UBERON:0002465;3.85e-12;10!UBERON:0002405;9.40e-08;27!UBERON:0002081;1.40e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002133,6.76e-26,2;UBERON:0003978,1.28e-17,3;UBERON:0009751,1.28e-17,3;UBERON:0000946,1.28e-17,3;UBERON:0002523,1.28e-17,3;UBERON:0005983,1.28e-17,3;UBERON:0002165,1.28e-17,3;UBERON:0002062,1.28e-17,3;UBERON:0007280,1.28e-17,3;UBERON:0010523,2.30e-17,3;UBERON:0001915,2.30e-17,3;UBERON:0001982,2.30e-17,3;UBERON:0001473,5.00e-15,8;UBERON:0004536,5.00e-15,8;UBERON:0006558,5.00e-15,8;UBERON:0002171,5.85e-14,1;UBERON:0006518,5.85e-14,1;UBERON:0008949,5.85e-14,1;UBERON:0000101,5.85e-14,1;UBERON:0002167,5.85e-14,1;UBERON:0002135,6.65e-14,1;UBERON:0002134,8.58e-14,1;UBERON:0005208,8.58e-14,1;UBERON:0005946,8.58e-14,1;UBERON:0005965,8.58e-14,1;UBERON:0002078,8.58e-14,1;UBERON:0002465,3.85e-12,10;UBERON:0000055,1.80e-08,68;UBERON:0004797,4.42e-08,7;UBERON:0002081,1.54e-07,2;UBERON:0010227,1.54e-07,2;UBERON:0002049,2.65e-07,78;UBERON:0007798,2.65e-07,78|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0.79504962946682,0,0,0,0,0,0.208994966536811,0,0,0,1.20848795132744,0,2.19655851793353,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,30.8944198208698,40.2797395941651,45.2804882318344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51354161145029,0.229160424011684,2.15361907373044,0,1.28767814440971,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.236417121897595,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.129282956361551,0,0,0,1.60181118851542,5.34494637338864,2.89967338743037,0.4961660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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80320 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14530 | |||
|TSSclassifier=W | |||
|UniProt=Q3SY56,B3KXP2 | |||
|association_with_transcript=175bp_to_ENST00000342234,NM_199262,uc002imh.1_5end | |||
|coexpression_cluster_id=C514 | |||
|description=CAGE_peak_3_at_SP6_5end | |||
|id=chr17:45933057..45933064,- | |||
|ontology_enrichment_celltype=CL:0002139!3.25e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002138;8.03e-20;6!CL:0002144;1.86e-17;3!CL:0002139;4.02e-13;24!CL:0000115;1.68e-07;36!CL:0000047;1.99e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.04e-20,6;CL:0002138,8.04e-20,6;CL:0005022,8.04e-20,6;CL:0002144,2.30e-17,3;CL:0002139,4.29e-13,24;CL:0000115,1.05e-08,36;CL:0002078,6.09e-07,45 | |||
|ontology_enrichment_development_v019=CL:0005022;8.03e-20;6!UBERON:0003124;1.42e-13;1!UBERON:0005062;1.72e-13;4!UBERON:0007284;1.72e-13;4!UBERON:0004872;6.29e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;1.99e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.87e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.31e-14!115;UBERON:0003978!4.47e-10!3;UBERON:0009751!4.47e-10!3;UBERON:0000946!4.47e-10!3;UBERON:0002523!4.47e-10!3;UBERON:0005983!4.47e-10!3;UBERON:0002165!4.47e-10!3;UBERON:0002062!4.47e-10!3;UBERON:0007280!4.47e-10!3;UBERON:0009722!1.50e-08!11;UBERON:0007690!1.50e-08!11;UBERON:0002465!1.03e-07!10;UBERON:0002133!1.26e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;5.96e-26;2!UBERON:0003978;1.18e-17;3!UBERON:0000946;1.18e-17;3!UBERON:0010523;1.86e-17;3!UBERON:0001915;1.86e-17;3!UBERON:0001982;1.86e-17;3!UBERON:0001473;5.00e-15;8!UBERON:0004536;5.00e-15;8!UBERON:0006558;5.00e-15;8!UBERON:0002135;7.08e-14;1!UBERON:0002134;7.08e-14;1!UBERON:0002171;7.08e-14;1!UBERON:0005208;7.08e-14;1!UBERON:0006518;7.08e-14;1!UBERON:0008949;7.08e-14;1!UBERON:0004145;7.08e-14;1!UBERON:0005946;7.08e-14;1!UBERON:0000101;7.08e-14;1!UBERON:0005965;7.08e-14;1!UBERON:0002167;7.08e-14;1!UBERON:0002078;7.08e-14;1!UBERON:0002465;3.85e-12;10!UBERON:0002405;9.40e-08;27!UBERON:0002081;1.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,6.76e-26,2;UBERON:0003978,1.28e-17,3;UBERON:0009751,1.28e-17,3;UBERON:0000946,1.28e-17,3;UBERON:0002523,1.28e-17,3;UBERON:0005983,1.28e-17,3;UBERON:0002165,1.28e-17,3;UBERON:0002062,1.28e-17,3;UBERON:0007280,1.28e-17,3;UBERON:0010523,2.30e-17,3;UBERON:0001915,2.30e-17,3;UBERON:0001982,2.30e-17,3;UBERON:0001473,5.00e-15,8;UBERON:0004536,5.00e-15,8;UBERON:0006558,5.00e-15,8;UBERON:0002171,5.85e-14,1;UBERON:0006518,5.85e-14,1;UBERON:0008949,5.85e-14,1;UBERON:0000101,5.85e-14,1;UBERON:0002167,5.85e-14,1;UBERON:0002135,6.65e-14,1;UBERON:0002134,8.58e-14,1;UBERON:0005208,8.58e-14,1;UBERON:0005946,8.58e-14,1;UBERON:0005965,8.58e-14,1;UBERON:0002078,8.58e-14,1;UBERON:0002465,3.85e-12,10;UBERON:0000055,1.80e-08,68;UBERON:0004797,4.42e-08,7;UBERON:0002081,1.54e-07,2;UBERON:0010227,1.54e-07,2;UBERON:0002049,2.65e-07,78;UBERON:0007798,2.65e-07,78 | |||
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|short_description=p3@SP6 | |||
}} |
Revision as of 14:10, 11 September 2013
Short description: | p3@SP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SP6_5end |
Coexpression cluster: | C514_Lymphatic_Endothelial_mycosis_appendix_heart_CD14_migratory |
Association with transcript: | 175bp_to_ENST00000342234, NM_199262, uc002imh.1_5end |
EntrezGene: | SP6 |
HGNC: | 14530 |
UniProt: | Q3SY56B3KXP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.04e-20 | 6 |
endothelial cell of lymphatic vessel | 8.04e-20 | 6 |
vascular lymphangioblast | 8.04e-20 | 6 |
capillary endothelial cell | 2.30e-17 | 3 |
endothelial cell of vascular tree | 4.29e-13 | 24 |
endothelial cell | 1.05e-08 | 36 |
meso-epithelial cell | 6.09e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 6.76e-26 | 2 |
valve | 1.28e-17 | 3 |
cardiac mesenchyme | 1.28e-17 | 3 |
cardial valve | 1.28e-17 | 3 |
tunica intima | 1.28e-17 | 3 |
heart layer | 1.28e-17 | 3 |
endocardium | 1.28e-17 | 3 |
endocardial cushion | 1.28e-17 | 3 |
presumptive endocardium | 1.28e-17 | 3 |
microcirculatory vessel | 2.30e-17 | 3 |
endothelium of capillary | 2.30e-17 | 3 |
capillary | 2.30e-17 | 3 |
lymphatic vessel | 5.00e-15 | 8 |
lymph vasculature | 5.00e-15 | 8 |
lymphatic part of lymphoid system | 5.00e-15 | 8 |
lower lobe of right lung | 5.85e-14 | 1 |
right lung lobe | 5.85e-14 | 1 |
lower lobe of lung | 5.85e-14 | 1 |
lobe of lung | 5.85e-14 | 1 |
right lung | 5.85e-14 | 1 |
mitral valve | 6.65e-14 | 1 |
tricuspid valve | 8.58e-14 | 1 |
right atrium valve | 8.58e-14 | 1 |
outflow tract of atrium | 8.58e-14 | 1 |
outflow part of right atrium | 8.58e-14 | 1 |
right cardiac atrium | 8.58e-14 | 1 |
lymphoid system | 3.85e-12 | 10 |
vessel | 1.80e-08 | 68 |
blood vessel layer | 4.42e-08 | 7 |
cardiac atrium | 1.54e-07 | 2 |
future cardiac atrium | 1.54e-07 | 2 |
vasculature | 2.65e-07 | 78 |
vascular system | 2.65e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.87e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.