FFCP PHASE1:Hg19::chr17:66508204..66508216,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5573|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9388|TSSclassifier=S|UniProt=P10644,B2R5T5|association_with_transcript=94bp_to_ENST00000358598,NM_212471,uc002jhg.2_5end|coexpression_cluster_id=C17|description=CAGE_peak_10_at_PRKAR1A_5end|id=chr17:66508204..66508216,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000840;1.28e-07;5|ontology_enrichment_celltype_v019_2=CL:0000840,1.25e-07,5;CL:0001029,1.25e-07,5|ontology_enrichment_development_v019=UBERON:0005062;1.66e-11;4!UBERON:0007284;1.66e-11;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1909;5.72e-11;2|ontology_enrichment_disease_v019_2=DOID:1909,4.06e-11,2|ontology_enrichment_uberon=UBERON:0004121!5.46e-14!169;UBERON:0000073!9.17e-14!94;UBERON:0001016!9.17e-14!94;UBERON:0000924!9.37e-14!173;UBERON:0006601!9.37e-14!173;UBERON:0007023!1.55e-13!115;UBERON:0001017!2.08e-13!82;UBERON:0005743!2.83e-13!86;UBERON:0002619!5.59e-13!22;UBERON:0002616!6.14e-13!59;UBERON:0000033!1.14e-12!123;UBERON:0000955!1.58e-12!69;UBERON:0006238!1.58e-12!69;UBERON:0002020!3.66e-12!34;UBERON:0003528!3.66e-12!34;UBERON:0000153!4.09e-12!129;UBERON:0007811!4.09e-12!129;UBERON:0002780!9.88e-12!41;UBERON:0001890!9.88e-12!41;UBERON:0006240!9.88e-12!41;UBERON:0001950!1.04e-11!20;UBERON:0001893!1.30e-11!34;UBERON:0001869!1.32e-11!32;UBERON:0003080!3.77e-11!42;UBERON:0002791!4.99e-11!33;UBERON:0001049!6.67e-11!57;UBERON:0005068!6.67e-11!57;UBERON:0006241!6.67e-11!57;UBERON:0007135!6.67e-11!57;UBERON:0003075!1.33e-10!86;UBERON:0007284!1.33e-10!86;UBERON:0000956!2.32e-10!25;UBERON:0000203!2.32e-10!25;UBERON:0002346!3.14e-10!90;UBERON:0003056!1.09e-09!61;UBERON:0000062!2.62e-07!511;UBERON:0000922!6.12e-07!612;UBERON:0000468!9.87e-07!659|ontology_enrichment_uberon_v019=UBERON:0001950;2.77e-13;20!UBERON:0002619;5.06e-12;22!UBERON:0002133;7.88e-11;2!UBERON:0000956;1.71e-10;25!UBERON:0000203;1.71e-10;25!UBERON:0001872;2.69e-09;5!UBERON:0001869;2.55e-08;32!UBERON:0002791;1.60e-07;32!UBERON:0003978;1.72e-07;3!UBERON:0000946;1.72e-07;3!UBERON:0001893;5.88e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.65e-13,20;UBERON:0002619,3.16e-12,22;UBERON:0002133,7.01e-11,2;UBERON:0000956,1.14e-10,25;UBERON:0000203,1.14e-10,25;UBERON:0005253,3.62e-10,2;UBERON:0001872,2.38e-09,5;UBERON:0002791,3.81e-08,32;UBERON:0001869,3.81e-08,32;UBERON:0003528,1.31e-07,34;UBERON:0002020,1.31e-07,34;UBERON:0001893,1.31e-07,34;UBERON:0003978,1.59e-07,3;UBERON:0009751,1.59e-07,3;UBERON:0000946,1.59e-07,3;UBERON:0002523,1.59e-07,3;UBERON:0005983,1.59e-07,3;UBERON:0002165,1.59e-07,3;UBERON:0002062,1.59e-07,3;UBERON:0007280,1.59e-07,3|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0.261185628199839,0,0,0,0.263766978228454,0.37129905888014,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0.383829398097213,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0,0,0.647787332037959,0,0.145398238779565,0,0.242584061187816,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434377689410233,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,2.43806866313962,0.670700859703636,0.12786256184353,0,1.00267582127178,0,0,0,0,0.443458794925128,0.175669571386252,0.392937226493138,0,0,1.29818957461873,1.21890816109487,1.32957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0.49333509683432,0,0,0.163461903113459,0.605429710579726,1.72852777344,0.468642863667593,0.312160076830321,0,0.298897361103602,0,0,0,0.204154171254893,0.245668634623536,0.413303124703062,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0,0,0.45071417671979,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0,0.309157587715317,0,0,0,0.0974370051611986,0,0,0.80823028409406,0,0,0,0,0.272746120590835,0,0.243947412259191,0.397589304964456,0.348581828608555,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.686271241194102,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.115930404975077,0.469634776943287,0,0,0.190254152234598,0,0,0.492434012174795,2.10603838625314,0.594524649154913,0,0.335964256397719,0.141775097242386,0.179117045405697,0.290633938513962,0.383382679165211,26.6038148463809,2.55340458638356,0.207328115540772,0.144119953416961,0.12624243342638,0.571481048629521,0.763976851116555,0,0,0.102827492703324,0.600686115687835,0,0.112131084345361,0,0.07333828582095,0.517086863031111,0,0,0.26593811658487,0,0.514414748524284,0,0.266422179016099,0,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.299918973546171,3.64871341923571,0,0,0.2396248554915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1862580613,0.381882949668989,1.0105859447911,0,0,0.0673520530145875,1.00411087549747,0.99798106963804,0.325613074443898,0.106727345877715,0,0.0898252021065869,0,0.244482888365733,1.22068853494722,0,0,0|short_description=p10@PRKAR1A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5573 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9388 | |||
|TSSclassifier=S | |||
|UniProt=P10644,B2R5T5 | |||
|association_with_transcript=94bp_to_ENST00000358598,NM_212471,uc002jhg.2_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_10_at_PRKAR1A_5end | |||
|id=chr17:66508204..66508216,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000840;1.28e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,1.25e-07,5;CL:0001029,1.25e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.66e-11;4!UBERON:0007284;1.66e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;5.72e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,4.06e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0004121!5.46e-14!169;UBERON:0000073!9.17e-14!94;UBERON:0001016!9.17e-14!94;UBERON:0000924!9.37e-14!173;UBERON:0006601!9.37e-14!173;UBERON:0007023!1.55e-13!115;UBERON:0001017!2.08e-13!82;UBERON:0005743!2.83e-13!86;UBERON:0002619!5.59e-13!22;UBERON:0002616!6.14e-13!59;UBERON:0000033!1.14e-12!123;UBERON:0000955!1.58e-12!69;UBERON:0006238!1.58e-12!69;UBERON:0002020!3.66e-12!34;UBERON:0003528!3.66e-12!34;UBERON:0000153!4.09e-12!129;UBERON:0007811!4.09e-12!129;UBERON:0002780!9.88e-12!41;UBERON:0001890!9.88e-12!41;UBERON:0006240!9.88e-12!41;UBERON:0001950!1.04e-11!20;UBERON:0001893!1.30e-11!34;UBERON:0001869!1.32e-11!32;UBERON:0003080!3.77e-11!42;UBERON:0002791!4.99e-11!33;UBERON:0001049!6.67e-11!57;UBERON:0005068!6.67e-11!57;UBERON:0006241!6.67e-11!57;UBERON:0007135!6.67e-11!57;UBERON:0003075!1.33e-10!86;UBERON:0007284!1.33e-10!86;UBERON:0000956!2.32e-10!25;UBERON:0000203!2.32e-10!25;UBERON:0002346!3.14e-10!90;UBERON:0003056!1.09e-09!61;UBERON:0000062!2.62e-07!511;UBERON:0000922!6.12e-07!612;UBERON:0000468!9.87e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.77e-13;20!UBERON:0002619;5.06e-12;22!UBERON:0002133;7.88e-11;2!UBERON:0000956;1.71e-10;25!UBERON:0000203;1.71e-10;25!UBERON:0001872;2.69e-09;5!UBERON:0001869;2.55e-08;32!UBERON:0002791;1.60e-07;32!UBERON:0003978;1.72e-07;3!UBERON:0000946;1.72e-07;3!UBERON:0001893;5.88e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.65e-13,20;UBERON:0002619,3.16e-12,22;UBERON:0002133,7.01e-11,2;UBERON:0000956,1.14e-10,25;UBERON:0000203,1.14e-10,25;UBERON:0005253,3.62e-10,2;UBERON:0001872,2.38e-09,5;UBERON:0002791,3.81e-08,32;UBERON:0001869,3.81e-08,32;UBERON:0003528,1.31e-07,34;UBERON:0002020,1.31e-07,34;UBERON:0001893,1.31e-07,34;UBERON:0003978,1.59e-07,3;UBERON:0009751,1.59e-07,3;UBERON:0000946,1.59e-07,3;UBERON:0002523,1.59e-07,3;UBERON:0005983,1.59e-07,3;UBERON:0002165,1.59e-07,3;UBERON:0002062,1.59e-07,3;UBERON:0007280,1.59e-07,3 | |||
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| |||
|short_description=p10@PRKAR1A | |||
}} |
Revision as of 15:14, 11 September 2013
Short description: | p10@PRKAR1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_PRKAR1A_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 94bp_to_ENST00000358598, NM_212471, uc002jhg.2_5end |
EntrezGene: | PRKAR1A |
HGNC: | 9388 |
UniProt: | P10644B2R5T5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 1.25e-07 | 5 |
common dendritic progenitor | 1.25e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.65e-13 | 20 |
regional part of cerebral cortex | 3.16e-12 | 22 |
atrioventricular valve | 7.01e-11 | 2 |
cerebral cortex | 1.14e-10 | 25 |
pallium | 1.14e-10 | 25 |
head mesenchyme | 3.62e-10 | 2 |
parietal lobe | 2.38e-09 | 5 |
regional part of telencephalon | 3.81e-08 | 32 |
cerebral hemisphere | 3.81e-08 | 32 |
brain grey matter | 1.31e-07 | 34 |
gray matter | 1.31e-07 | 34 |
telencephalon | 1.31e-07 | 34 |
valve | 1.59e-07 | 3 |
cardiac mesenchyme | 1.59e-07 | 3 |
cardial valve | 1.59e-07 | 3 |
tunica intima | 1.59e-07 | 3 |
heart layer | 1.59e-07 | 3 |
endocardium | 1.59e-07 | 3 |
endocardial cushion | 1.59e-07 | 3 |
presumptive endocardium | 1.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 4.06e-11 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.