FFCP PHASE1:Hg19::chr1:220393543..220393560,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C763|description=CAGE_peak_at_chr1:220393543..220393560,+|id=chr1:220393543..220393560,+|ontology_enrichment_celltype=CL:0000945!1.01e-69!24;CL:0000826!1.01e-69!24;CL:0000838!9.47e-31!52;CL:0000542!4.05e-30!53;CL:0000051!4.05e-30!53;CL:0000236!2.13e-19!14;CL:0000080!1.15e-12!6;CL:0000988!6.77e-12!182;CL:0002087!9.17e-12!119;CL:0002031!3.50e-11!124;CL:0000738!4.42e-11!140;CL:0000946!3.88e-09!1;CL:0000786!3.88e-09!1;CL:0000980!3.88e-09!1;CL:0002032!5.77e-09!165;CL:0000837!5.77e-09!165;CL:0000037!1.75e-08!172;CL:0000566!1.75e-08!172|ontology_enrichment_celltype_v019=CL:0000945;7.86e-61;24!CL:0000542;8.24e-14;53!CL:0000946;1.61e-13;1!CL:0000786;1.61e-13;1!CL:0000236;3.81e-09;13|ontology_enrichment_celltype_v019_2=CL:0000945,7.86e-61,24;CL:0000826,7.86e-61,24;CL:0000838,1.85e-27,52;CL:0000542,6.44e-27,53;CL:0000051,6.44e-27,53;CL:0000236,2.39e-14,14;CL:0000946,1.25e-13,1;CL:0000786,1.25e-13,1;CL:0000980,1.25e-13,1;CL:0000988,4.88e-12,177;CL:0002087,1.39e-11,115;CL:0002031,4.79e-11,120;CL:0000738,1.37e-09,136;CL:0002032,6.88e-08,161;CL:0000837,6.88e-08,161;CL:0000037,1.68e-07,168;CL:0000785,1.87e-07,2;CL:0000955,1.87e-07,2;CL:0000818,1.87e-07,2;CL:0000954,1.87e-07,2;CL:0000816,1.87e-07,2|ontology_enrichment_development_v019=CL:0000051;8.24e-14;53!CL:0000954;2.12e-07;2|ontology_enrichment_disease=DOID:0060058!1.11e-12!10;DOID:630!4.19e-09!1;DOID:0050177!4.19e-09!1;DOID:0050427!4.19e-09!1;DOID:4960!6.22e-09!1;DOID:0070004!6.22e-09!1|ontology_enrichment_disease_v019=DOID:630;1.61e-13;1!DOID:0050177;1.61e-13;1!DOID:0050427;1.61e-13;1!DOID:0060058;7.97e-12;10|ontology_enrichment_disease_v019_2=DOID:630,1.42e-13,1;DOID:0050177,1.42e-13,1;DOID:0050427,1.42e-13,1;DOID:0060058,7.26e-12,10|ontology_enrichment_uberon=UBERON:0001154!7.27e-09!1;UBERON:0001153!7.27e-09!1;UBERON:0002372!1.07e-08!1;UBERON:0001961!1.07e-08!1;UBERON:0001744!1.07e-08!1;UBERON:0001735!1.07e-08!1;UBERON:0002331!8.69e-08!10;UBERON:0000358!8.69e-08!10;UBERON:0000307!8.69e-08!10;UBERON:0000091!8.69e-08!10;UBERON:0000087!8.69e-08!10;UBERON:0007806!8.69e-08!10;UBERON:0008780!8.69e-08!10;UBERON:0005728!8.69e-08!10|ontology_enrichment_uberon_v019=UBERON:0002331;4.82e-12;10!UBERON:0000178;3.30e-08;15!UBERON:0000179;3.30e-08;15!UBERON:0000463;3.30e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002331,4.82e-12,10;UBERON:0000358,4.82e-12,10;UBERON:0000307,4.82e-12,10;UBERON:0000091,4.82e-12,10;UBERON:0000087,4.82e-12,10;UBERON:0007010,4.82e-12,10;UBERON:0007806,4.82e-12,10;UBERON:0008780,4.82e-12,10;UBERON:0005728,4.82e-12,10;UBERON:0000178,3.30e-08,15;UBERON:0000179,3.30e-08,15;UBERON:0000463,3.30e-08,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.79416738629103,5.25443772479653,7.16268109954481,0,0,0.154816123316076,0,0,0,0.0774672005803016,5.82893853198428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,3.41527781465669,1.76171156811282,3.05818582500183,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,1.10776324914963,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8260564340311,5.80750513048563,5.74320722280005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,2.80122976276061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95897778844825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49794045737251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194|short_description=p@chr1:220393543..220393560,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C763 | |||
|description=CAGE_peak_at_chr1:220393543..220393560,+ | |||
|id=chr1:220393543..220393560,+ | |||
|ontology_enrichment_celltype=CL:0000945!1.01e-69!24;CL:0000826!1.01e-69!24;CL:0000838!9.47e-31!52;CL:0000542!4.05e-30!53;CL:0000051!4.05e-30!53;CL:0000236!2.13e-19!14;CL:0000080!1.15e-12!6;CL:0000988!6.77e-12!182;CL:0002087!9.17e-12!119;CL:0002031!3.50e-11!124;CL:0000738!4.42e-11!140;CL:0000946!3.88e-09!1;CL:0000786!3.88e-09!1;CL:0000980!3.88e-09!1;CL:0002032!5.77e-09!165;CL:0000837!5.77e-09!165;CL:0000037!1.75e-08!172;CL:0000566!1.75e-08!172 | |||
|ontology_enrichment_celltype_v019=CL:0000945;7.86e-61;24!CL:0000542;8.24e-14;53!CL:0000946;1.61e-13;1!CL:0000786;1.61e-13;1!CL:0000236;3.81e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.86e-61,24;CL:0000826,7.86e-61,24;CL:0000838,1.85e-27,52;CL:0000542,6.44e-27,53;CL:0000051,6.44e-27,53;CL:0000236,2.39e-14,14;CL:0000946,1.25e-13,1;CL:0000786,1.25e-13,1;CL:0000980,1.25e-13,1;CL:0000988,4.88e-12,177;CL:0002087,1.39e-11,115;CL:0002031,4.79e-11,120;CL:0000738,1.37e-09,136;CL:0002032,6.88e-08,161;CL:0000837,6.88e-08,161;CL:0000037,1.68e-07,168;CL:0000785,1.87e-07,2;CL:0000955,1.87e-07,2;CL:0000818,1.87e-07,2;CL:0000954,1.87e-07,2;CL:0000816,1.87e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;8.24e-14;53!CL:0000954;2.12e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.11e-12!10;DOID:630!4.19e-09!1;DOID:0050177!4.19e-09!1;DOID:0050427!4.19e-09!1;DOID:4960!6.22e-09!1;DOID:0070004!6.22e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:630;1.61e-13;1!DOID:0050177;1.61e-13;1!DOID:0050427;1.61e-13;1!DOID:0060058;7.97e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.42e-13,1;DOID:0050177,1.42e-13,1;DOID:0050427,1.42e-13,1;DOID:0060058,7.26e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0001154!7.27e-09!1;UBERON:0001153!7.27e-09!1;UBERON:0002372!1.07e-08!1;UBERON:0001961!1.07e-08!1;UBERON:0001744!1.07e-08!1;UBERON:0001735!1.07e-08!1;UBERON:0002331!8.69e-08!10;UBERON:0000358!8.69e-08!10;UBERON:0000307!8.69e-08!10;UBERON:0000091!8.69e-08!10;UBERON:0000087!8.69e-08!10;UBERON:0007806!8.69e-08!10;UBERON:0008780!8.69e-08!10;UBERON:0005728!8.69e-08!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;4.82e-12;10!UBERON:0000178;3.30e-08;15!UBERON:0000179;3.30e-08;15!UBERON:0000463;3.30e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,4.82e-12,10;UBERON:0000358,4.82e-12,10;UBERON:0000307,4.82e-12,10;UBERON:0000091,4.82e-12,10;UBERON:0000087,4.82e-12,10;UBERON:0007010,4.82e-12,10;UBERON:0007806,4.82e-12,10;UBERON:0008780,4.82e-12,10;UBERON:0005728,4.82e-12,10;UBERON:0000178,3.30e-08,15;UBERON:0000179,3.30e-08,15;UBERON:0000463,3.30e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.79416738629103,5.25443772479653,7.16268109954481,0,0,0.154816123316076,0,0,0,0.0774672005803016,5.82893853198428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,3.41527781465669,1.76171156811282,3.05818582500183,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,1.10776324914963,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8260564340311,5.80750513048563,5.74320722280005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,2.80122976276061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95897778844825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49794045737251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194 | |||
|short_description=p@chr1:220393543..220393560,+ | |||
}} |
Revision as of 03:43, 12 September 2013
Short description: | p@chr1:220393543..220393560, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:220393543..220393560, + |
Coexpression cluster: | C763_cord_B_splenic_xeroderma_b_hairy_mycosis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.86e-61 | 24 |
pro-B cell | 7.86e-61 | 24 |
lymphoid lineage restricted progenitor cell | 1.85e-27 | 52 |
lymphocyte | 6.44e-27 | 53 |
common lymphoid progenitor | 6.44e-27 | 53 |
B cell | 2.39e-14 | 14 |
antibody secreting cell | 1.25e-13 | 1 |
plasma cell | 1.25e-13 | 1 |
plasmablast | 1.25e-13 | 1 |
hematopoietic cell | 4.88e-12 | 177 |
nongranular leukocyte | 1.39e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 4.79e-11 | 120 |
leukocyte | 1.37e-09 | 136 |
hematopoietic oligopotent progenitor cell | 6.88e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.88e-08 | 161 |
hematopoietic stem cell | 1.68e-07 | 168 |
mature B cell | 1.87e-07 | 2 |
pre-B-II cell | 1.87e-07 | 2 |
transitional stage B cell | 1.87e-07 | 2 |
small pre-B-II cell | 1.87e-07 | 2 |
immature B cell | 1.87e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 4.82e-12 | 10 |
blastocyst | 4.82e-12 | 10 |
blastula | 4.82e-12 | 10 |
bilaminar disc | 4.82e-12 | 10 |
inner cell mass | 4.82e-12 | 10 |
cleaving embryo | 4.82e-12 | 10 |
connecting stalk | 4.82e-12 | 10 |
inner cell mass derived epiblast | 4.82e-12 | 10 |
extraembryonic mesoderm | 4.82e-12 | 10 |
blood | 3.30e-08 | 15 |
haemolymphatic fluid | 3.30e-08 | 15 |
organism substance | 3.30e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.42e-13 | 1 |
monogenic disease | 1.42e-13 | 1 |
xeroderma pigmentosum | 1.42e-13 | 1 |
lymphoma | 7.26e-12 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.