FFCP PHASE1:Hg19::chr1:235344971..235344985,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51742|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15550|TSSclassifier=N|UniProt=|association_with_transcript=194bp_to_ENST00000494543_5end|description=CAGE_peak_5_at_ARID4B_5end|id=chr1:235344971..235344985,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0003528;3.82e-10;34!UBERON:0002020;3.82e-10;34!UBERON:0002619;1.20e-08;22!UBERON:0002771;1.95e-08;2!UBERON:0002148;5.11e-08;2!UBERON:0006331;5.11e-08;2!UBERON:0009662;5.11e-08;2!UBERON:0002791;7.28e-08;32!UBERON:0000956;1.69e-07;25!UBERON:0000203;1.69e-07;25!UBERON:0001950;2.10e-07;20!UBERON:0000073;6.71e-07;53!UBERON:0002616;6.71e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0003528,5.96e-12,34;UBERON:0002020,5.96e-12,34;UBERON:0000073,2.85e-11,53;UBERON:0002616,2.85e-11,53;UBERON:0001049,1.68e-10,56;UBERON:0005068,1.68e-10,56;UBERON:0006241,1.68e-10,56;UBERON:0007135,1.68e-10,56;UBERON:0002791,7.25e-09,32;UBERON:0002619,8.18e-09,22;UBERON:0002771,1.29e-08,2;UBERON:0001893,2.99e-08,34;UBERON:0002780,4.68e-08,41;UBERON:0001890,4.68e-08,41;UBERON:0003080,4.68e-08,41;UBERON:0006240,4.68e-08,41;UBERON:0000955,6.14e-08,68;UBERON:0006238,6.14e-08,68;UBERON:0002148,9.09e-08,2;UBERON:0006331,9.09e-08,2;UBERON:0009662,9.09e-08,2;UBERON:0002346,9.27e-08,86;UBERON:0000956,1.21e-07,25;UBERON:0000203,1.21e-07,25;UBERON:0001950,1.25e-07,20;UBERON:0001017,3.16e-07,81;UBERON:0001869,3.35e-07,32;UBERON:0003075,3.58e-07,82;UBERON:0007284,3.58e-07,82|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.37129905888014,0,1.34465029290355,0.602694528023977,0,0,0,0,0.313454721478088,0,0.684372125364421,0,0.382067028739756,0.656804715599566,0.472264687882075,0,0,0,0,0,0,0.387336002901508,0.284338464974843,0,0,0.401088894940283,0.651032612147555,0,0,0,0.726991193897824,0.377875943688809,0,0.697287110717054,0.411167888021826,0.309706370895104,0,0.512321413058201,0,0,0,0,0.376484679085209,0,0,0.306083892370903,0,0.639337125799041,0,0.997318288108159,0.852449501065388,2.32167390902867,0,0,0.75374599577023,1.5644487552606,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0.764546456250458,0,0,0.263384084775077,0.393419540227666,3.93010762749165,3.49522548299166,0,0,0,0,0,0.589211814949674,0,0.270803863765016,0.768547918354051,0.650296737799391,0.493313713811028,0.552700035571697,0.289803085735052,0.14828656316206,0,1.04535523804977,0.226618685395132,0.383220493601921,0.34362744548263,0.759059076058509,0,0.651083453856419,0,0,0.255973222308837,0,0.236777252044017,0,0.80642697289893,1.06976078313403,1.88271725047639,0,0,0,0,0,0.434539556882471,0,0,0.283604451492204,0.443458794925128,0.351339142772504,0,0,0,0.649094787309367,0.174129737299267,0.664789802594326,0.476981248610684,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0,0.368502951935304,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0.427114777637135,0,0,0.206105058476878,0.257640540045629,0,0.337552664482532,0,0,0.276149695926898,0,0,0,0.169560592310488,0,0.272746120590835,0,0.121973706129595,0.132529768321485,0.232387885739037,0.621966330092223,0,0.36497735907583,0,0,0,0.928735856063958,0.721879481669586,0.118306800039844,0.505754070234305,0.241011029883482,0.661763836394364,0.217879444092406,0.474541238222193,0,0.392442930250692,0.38474715694639,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.171567810298526,0.219500570817251,0,0.201057944823262,0.277765335475589,0,0,0,0.231860809950154,0,0.144366447761074,0.925971025153221,1.33177906564219,0,0,0,0,0.297262324577456,0,0.16798212819886,0,0,0.290633938513962,0,0,0.176096868026452,0,0.144119953416961,0,0.190493682876507,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0.542621605391443,0,0.325736184293735,0,0.791951872933429,0,0,0.99972991182057,1.2162378064119,1.50677127429638,4.21667878966063,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0,0.336255431980582,0.394061520403854,1.72502059887614,2.18183161675572,0.508189248444927,0,1.54657762555539,0,0.637938751653163,0,5.9832291840805,0.414415513436035,0.24538298343828,0.500170521059677,0.542530047399471,1.03985430765404,0.892144943985809,0.473107245101804,0.35142424497814,0,0,0,0,0,0.260650843404249,0,0,0,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51742 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15550 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=194bp_to_ENST00000494543_5end | |||
|description=CAGE_peak_5_at_ARID4B_5end | |||
|id=chr1:235344971..235344985,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.82e-10;34!UBERON:0002020;3.82e-10;34!UBERON:0002619;1.20e-08;22!UBERON:0002771;1.95e-08;2!UBERON:0002148;5.11e-08;2!UBERON:0006331;5.11e-08;2!UBERON:0009662;5.11e-08;2!UBERON:0002791;7.28e-08;32!UBERON:0000956;1.69e-07;25!UBERON:0000203;1.69e-07;25!UBERON:0001950;2.10e-07;20!UBERON:0000073;6.71e-07;53!UBERON:0002616;6.71e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,5.96e-12,34;UBERON:0002020,5.96e-12,34;UBERON:0000073,2.85e-11,53;UBERON:0002616,2.85e-11,53;UBERON:0001049,1.68e-10,56;UBERON:0005068,1.68e-10,56;UBERON:0006241,1.68e-10,56;UBERON:0007135,1.68e-10,56;UBERON:0002791,7.25e-09,32;UBERON:0002619,8.18e-09,22;UBERON:0002771,1.29e-08,2;UBERON:0001893,2.99e-08,34;UBERON:0002780,4.68e-08,41;UBERON:0001890,4.68e-08,41;UBERON:0003080,4.68e-08,41;UBERON:0006240,4.68e-08,41;UBERON:0000955,6.14e-08,68;UBERON:0006238,6.14e-08,68;UBERON:0002148,9.09e-08,2;UBERON:0006331,9.09e-08,2;UBERON:0009662,9.09e-08,2;UBERON:0002346,9.27e-08,86;UBERON:0000956,1.21e-07,25;UBERON:0000203,1.21e-07,25;UBERON:0001950,1.25e-07,20;UBERON:0001017,3.16e-07,81;UBERON:0001869,3.35e-07,32;UBERON:0003075,3.58e-07,82;UBERON:0007284,3.58e-07,82 | |||
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| |||
|short_description=p5@ARID4B | |||
}} |
Revision as of 04:21, 12 September 2013
Short description: | p5@ARID4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ARID4B_5end |
Coexpression cluster: | NA |
Association with transcript: | 194bp_to_ENST00000494543_5end |
EntrezGene: | ARID4B |
HGNC: | 15550 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brain grey matter | 5.96e-12 | 34 |
gray matter | 5.96e-12 | 34 |
regional part of nervous system | 2.85e-11 | 53 |
regional part of brain | 2.85e-11 | 53 |
neural tube | 1.68e-10 | 56 |
neural rod | 1.68e-10 | 56 |
future spinal cord | 1.68e-10 | 56 |
neural keel | 1.68e-10 | 56 |
regional part of telencephalon | 7.25e-09 | 32 |
regional part of cerebral cortex | 8.18e-09 | 22 |
middle temporal gyrus | 1.29e-08 | 2 |
telencephalon | 2.99e-08 | 34 |
regional part of forebrain | 4.68e-08 | 41 |
forebrain | 4.68e-08 | 41 |
anterior neural tube | 4.68e-08 | 41 |
future forebrain | 4.68e-08 | 41 |
brain | 6.14e-08 | 68 |
future brain | 6.14e-08 | 68 |
locus ceruleus | 9.09e-08 | 2 |
brainstem nucleus | 9.09e-08 | 2 |
hindbrain nucleus | 9.09e-08 | 2 |
neurectoderm | 9.27e-08 | 86 |
cerebral cortex | 1.21e-07 | 25 |
pallium | 1.21e-07 | 25 |
neocortex | 1.25e-07 | 20 |
central nervous system | 3.16e-07 | 81 |
cerebral hemisphere | 3.35e-07 | 32 |
neural plate | 3.58e-07 | 82 |
presumptive neural plate | 3.58e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.