FFCP PHASE1:Hg19::chr1:6304233..6304243,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=390992|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26226|TSSclassifier=W|UniProt=Q5TGS1|association_with_transcript=-8bp_to_ENST00000377898,NM_001024598_5end|coexpression_cluster_id=C49|description=CAGE_peak_1_at_HES3_5end|id=chr1:6304233..6304243,+|ontology_enrichment_celltype=CL:0002322!8.92e-47!5;CL:0000540!1.74e-14!6;CL:0000031!1.74e-14!6;CL:0000404!1.74e-14!6;CL:0000039!3.03e-12!7;CL:0000586!3.03e-12!7;CL:0000047!5.30e-11!8;CL:0000148!5.53e-09!10;CL:0000541!5.53e-09!10|ontology_enrichment_celltype_v019=CL:0002322;1.15e-71;5!CL:0002321;4.95e-24;15!CL:0000540;6.70e-22;6!CL:0000404;6.70e-22;6!CL:0000148;1.54e-13;10!CL:0000147;7.71e-10;14!CL:0000039;6.06e-09;7!CL:0000586;6.06e-09;7!CL:0000710;4.81e-07;20|ontology_enrichment_celltype_v019_2=CL:0002322,1.15e-71,5;CL:0000540,6.70e-22,6;CL:0000031,6.70e-22,6;CL:0000404,6.70e-22,6;CL:0000047,1.34e-16,8;CL:0000148,1.54e-13,10;CL:0000541,1.54e-13,10;CL:0000147,7.71e-10,14;CL:0000039,6.06e-09,7;CL:0000586,6.06e-09,7;CL:0000133,3.72e-08,59;CL:0000710,4.81e-07,20|ontology_enrichment_development_v019=CL:0000031;6.70e-22;6!UBERON:0009117;2.90e-13;10!UBERON:0005564;2.90e-13;10|ontology_enrichment_disease=DOID:3095!3.18e-10!22;DOID:2994!3.18e-10!22;DOID:2355!4.33e-10!1|ontology_enrichment_disease_v019=DOID:3095;1.77e-10;22!DOID:2994;1.77e-10;22|ontology_enrichment_disease_v019_2=DOID:3095,1.75e-10,22;DOID:2994,1.75e-10,22|ontology_enrichment_uberon=UBERON:0000473!8.80e-11!8;UBERON:0002370!7.16e-10!4;UBERON:0005058!7.16e-10!4;UBERON:0009113!7.16e-10!4;UBERON:0003295!7.16e-10!4;UBERON:0005562!7.16e-10!4;UBERON:0003135!5.60e-08!11;UBERON:0000991!3.86e-07!21;UBERON:0009196!3.86e-07!21;UBERON:0009117!3.86e-07!21;UBERON:0005564!3.86e-07!21;UBERON:0003351!7.30e-07!6;UBERON:0004176!8.04e-07!22|ontology_enrichment_uberon_v019=UBERON:0000922;4.47e-08;49!UBERON:0000473;6.18e-08;8|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.18e-08,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,121.119890186688,128.421345503519,82.265311551619,33.8971649900261,80.4903514293255,79.5650642785309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,32.9543954353289,46.7634084430595,63.1469313804361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.41994405973866,0,0,0,0,0,0,36.0835975028326,1.52971800749174,0,18.7659446725246,11.7575658316847,0.918948995348449,0,0,0,0,0,0,0,0.775066918032073,0.682821857254437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@HES3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=390992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26226 | |||
|TSSclassifier=W | |||
|UniProt=Q5TGS1 | |||
|association_with_transcript=-8bp_to_ENST00000377898,NM_001024598_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_HES3_5end | |||
|id=chr1:6304233..6304243,+ | |||
|ontology_enrichment_celltype=CL:0002322!8.92e-47!5;CL:0000540!1.74e-14!6;CL:0000031!1.74e-14!6;CL:0000404!1.74e-14!6;CL:0000039!3.03e-12!7;CL:0000586!3.03e-12!7;CL:0000047!5.30e-11!8;CL:0000148!5.53e-09!10;CL:0000541!5.53e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.15e-71;5!CL:0002321;4.95e-24;15!CL:0000540;6.70e-22;6!CL:0000404;6.70e-22;6!CL:0000148;1.54e-13;10!CL:0000147;7.71e-10;14!CL:0000039;6.06e-09;7!CL:0000586;6.06e-09;7!CL:0000710;4.81e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.15e-71,5;CL:0000540,6.70e-22,6;CL:0000031,6.70e-22,6;CL:0000404,6.70e-22,6;CL:0000047,1.34e-16,8;CL:0000148,1.54e-13,10;CL:0000541,1.54e-13,10;CL:0000147,7.71e-10,14;CL:0000039,6.06e-09,7;CL:0000586,6.06e-09,7;CL:0000133,3.72e-08,59;CL:0000710,4.81e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000031;6.70e-22;6!UBERON:0009117;2.90e-13;10!UBERON:0005564;2.90e-13;10 | |||
|ontology_enrichment_disease=DOID:3095!3.18e-10!22;DOID:2994!3.18e-10!22;DOID:2355!4.33e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.77e-10;22!DOID:2994;1.77e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.75e-10,22;DOID:2994,1.75e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!8.80e-11!8;UBERON:0002370!7.16e-10!4;UBERON:0005058!7.16e-10!4;UBERON:0009113!7.16e-10!4;UBERON:0003295!7.16e-10!4;UBERON:0005562!7.16e-10!4;UBERON:0003135!5.60e-08!11;UBERON:0000991!3.86e-07!21;UBERON:0009196!3.86e-07!21;UBERON:0009117!3.86e-07!21;UBERON:0005564!3.86e-07!21;UBERON:0003351!7.30e-07!6;UBERON:0004176!8.04e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.47e-08;49!UBERON:0000473;6.18e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.18e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,121.119890186688,128.421345503519,82.265311551619,33.8971649900261,80.4903514293255,79.5650642785309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,32.9543954353289,46.7634084430595,63.1469313804361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.41994405973866,0,0,0,0,0,0,36.0835975028326,1.52971800749174,0,18.7659446725246,11.7575658316847,0.918948995348449,0,0,0,0,0,0,0,0.775066918032073,0.682821857254437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@HES3 | |||
}} |
Revision as of 06:22, 12 September 2013
Short description: | p1@HES3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HES3_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -8bp_to_ENST00000377898, NM_001024598_5end |
EntrezGene: | HES3 |
HGNC: | 26226 |
UniProt: | Q5TGS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.15e-71 | 5 |
neuron | 6.70e-22 | 6 |
neuroblast | 6.70e-22 | 6 |
electrically signaling cell | 6.70e-22 | 6 |
neuronal stem cell | 1.34e-16 | 8 |
melanocyte | 1.54e-13 | 10 |
melanoblast | 1.54e-13 | 10 |
pigment cell | 7.71e-10 | 14 |
germ line cell | 6.06e-09 | 7 |
germ cell | 6.06e-09 | 7 |
neurectodermal cell | 3.72e-08 | 59 |
neurecto-epithelial cell | 4.81e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
testis | 6.18e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.75e-10 | 22 |
germ cell cancer | 1.75e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.