FFCP PHASE1:Hg19::chr22:50963976..50964055,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9997 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10604 | |||
|TSSclassifier=S | |||
|UniProt=O43819 | |||
|association_with_transcript=0bp_to_ENST00000252785,ENST00000395693,NM_001169111,NM_005138,uc003blz.3,uc003bma.2_5end | |||
|coexpression_cluster_id=C1636 | |||
|description=CAGE_peak_1_at_SCO2_5end | |||
|id=chr22:50963976..50964055,- | |||
|ontology_enrichment_celltype=CL:0000220!2.45e-28!246;CL:0002321!6.32e-28!248;CL:0000548!1.84e-23!679;CL:0000004!1.84e-23!679;CL:0000255!1.84e-23!679;CL:0000012!7.82e-23!682;CL:0000222!1.62e-22!119;CL:0000055!1.59e-20!180;CL:0000144!2.62e-19!625;CL:0002371!2.95e-19!591;CL:0000183!4.76e-18!59;CL:0000066!1.67e-17!254;CL:0000680!2.69e-16!57;CL:0000056!2.69e-16!57;CL:0000355!2.69e-16!57;CL:0000187!1.76e-15!54;CL:0000393!2.13e-14!60;CL:0000211!2.13e-14!60;CL:0000192!8.10e-14!42;CL:0000514!8.10e-14!42;CL:0000003!8.61e-13!722;CL:0000359!5.64e-12!32;CL:0002078!1.03e-08!44;CL:0000115!5.87e-08!35;CL:1000449!1.15e-07!16;CL:0000213!2.71e-07!57;CL:0000215!2.71e-07!57;CL:0000057!3.85e-07!75;CL:0000071!8.52e-07!18;CL:0002546!8.52e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.47e-11;32!CL:0000192;1.33e-10;43!CL:0000187;4.40e-09;55!CL:0000393;6.21e-08;61!CL:0000211;6.21e-08;61!CL:1000449;2.56e-07;15!CL:0000115;3.13e-07;36!CL:0000071;7.92e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.68e-29,250;CL:0000222,2.20e-23,121;CL:0000066,3.27e-17,253;CL:0000680,1.18e-16,58;CL:0000056,1.18e-16,58;CL:0000355,1.18e-16,58;CL:0000187,7.78e-16,55;CL:0000393,9.59e-15,61;CL:0000211,9.59e-15,61;CL:0000192,3.59e-14,43;CL:0000514,3.59e-14,43;CL:0000359,5.61e-12,32;CL:0002078,3.85e-09,45;CL:0000115,2.14e-08,36;CL:0000213,1.16e-07,58;CL:0000215,1.16e-07,58;CL:1000449,2.50e-07,15;CL:0000057,4.07e-07,76;CL:0000071,8.50e-07,18;CL:0002546,8.50e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;1.33e-10;43!CL:0000355;4.16e-09;58!CL:0000222;6.93e-07;121!CL:0002546;7.92e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!7.69e-19!118;UBERON:0000486!1.13e-17!82;UBERON:0002049!4.48e-17!79;UBERON:0007798!4.48e-17!79;UBERON:0005256!8.56e-17!143;UBERON:0004290!2.28e-16!70;UBERON:0002100!4.74e-16!216;UBERON:0000914!1.03e-15!83;UBERON:0002329!1.03e-15!83;UBERON:0003077!1.03e-15!83;UBERON:0003059!1.03e-15!83;UBERON:0007282!1.03e-15!83;UBERON:0009618!1.03e-15!83;UBERON:0007285!1.03e-15!83;UBERON:0004872!2.02e-15!84;UBERON:0000490!2.63e-15!138;UBERON:0000055!3.65e-15!69;UBERON:0003104!5.89e-15!238;UBERON:0009142!5.89e-15!238;UBERON:0001981!4.60e-14!60;UBERON:0007500!4.60e-14!60;UBERON:0004537!4.60e-14!60;UBERON:0006965!4.60e-14!60;UBERON:0001134!9.14e-14!61;UBERON:0002036!9.14e-14!61;UBERON:0003082!9.14e-14!61;UBERON:0001637!9.69e-14!42;UBERON:0003509!9.69e-14!42;UBERON:0004572!9.69e-14!42;UBERON:0002385!5.88e-13!63;UBERON:0001015!5.88e-13!63;UBERON:0000383!5.88e-13!63;UBERON:0001009!7.66e-13!113;UBERON:0004535!1.68e-12!110;UBERON:0000481!4.79e-10!347;UBERON:0000119!5.60e-10!312;UBERON:0000483!9.60e-10!309;UBERON:0004573!1.53e-09!33;UBERON:0004571!1.53e-09!33;UBERON:0009569!5.33e-08!113;UBERON:0000475!6.36e-08!365;UBERON:0004211!1.15e-07!16;UBERON:0001285!1.15e-07!16;UBERON:0007684!1.15e-07!16;UBERON:0003220!1.15e-07!16;UBERON:0004208!1.15e-07!16;UBERON:0006555!6.41e-07!17;UBERON:0005103!6.41e-07!17;UBERON:0000083!6.41e-07!17;UBERON:0009201!6.41e-07!17;UBERON:0004819!6.41e-07!17;UBERON:0006553!6.41e-07!17;UBERON:0003074!6.41e-07!17;UBERON:0003060!6.41e-07!17;UBERON:0001986!8.52e-07!18;UBERON:0004638!8.52e-07!18;UBERON:0004852!8.52e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.01e-10;42!UBERON:0003509;7.01e-10;42!UBERON:0004572;7.01e-10;42!UBERON:0007500;1.33e-09;56!UBERON:0001981;1.33e-09;56!UBERON:0004537;1.33e-09;56!UBERON:0003914;2.10e-09;74!UBERON:0004573;9.89e-09;33!UBERON:0004571;9.89e-09;33!UBERON:0000055;8.50e-08;65!UBERON:0002049;9.15e-08;75!UBERON:0007798;9.15e-08;75!UBERON:0006555;2.56e-07;15!UBERON:0004819;2.56e-07;15!UBERON:0001285;2.56e-07;15!UBERON:0007684;2.56e-07;15!UBERON:0004638;7.92e-07;18!UBERON:0001986;7.92e-07;18!UBERON:0004852;7.92e-07;18 | |||
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| |||
|short_description=p1@SCO2 | |||
}} |
Revision as of 12:35, 12 September 2013
Short description: | p1@SCO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SCO2_5end |
Coexpression cluster: | C1636_Mesenchymal_Alveolar_Placental_Smooth_Fibroblast_Bronchial_Hair |
Association with transcript: | 0bp_to_ENST00000252785, ENST00000395693, NM_001169111, NM_005138, uc003blz.3, uc003bma.2_5end |
EntrezGene: | SCO2 |
HGNC: | 10604 |
UniProt: | O43819 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.68e-29 | 250 |
mesodermal cell | 2.20e-23 | 121 |
epithelial cell | 3.27e-17 | 253 |
muscle precursor cell | 1.18e-16 | 58 |
myoblast | 1.18e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.18e-16 | 58 |
muscle cell | 7.78e-16 | 55 |
electrically responsive cell | 9.59e-15 | 61 |
electrically active cell | 9.59e-15 | 61 |
smooth muscle cell | 3.59e-14 | 43 |
smooth muscle myoblast | 3.59e-14 | 43 |
vascular associated smooth muscle cell | 5.61e-12 | 32 |
meso-epithelial cell | 3.85e-09 | 45 |
endothelial cell | 2.14e-08 | 36 |
lining cell | 1.16e-07 | 58 |
barrier cell | 1.16e-07 | 58 |
epithelial cell of nephron | 2.50e-07 | 15 |
fibroblast | 4.07e-07 | 76 |
blood vessel endothelial cell | 8.50e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.50e-07 | 18 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.