FFCP PHASE1:Hg19::chr2:175757825..175757858,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1123|description=CAGE_peak_at_chr2:175757825..175757858,-|id=chr2:175757825..175757858,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!5.36e-73!22;UBERON:0001869!1.26e-64!32;UBERON:0000956!2.82e-64!25;UBERON:0000203!2.82e-64!25;UBERON:0001893!9.14e-61!34;UBERON:0002020!1.24e-60!34;UBERON:0003528!1.24e-60!34;UBERON:0001950!4.57e-60!20;UBERON:0002780!2.53e-56!41;UBERON:0001890!2.53e-56!41;UBERON:0006240!2.53e-56!41;UBERON:0002791!2.30e-55!33;UBERON:0003080!6.10e-55!42;UBERON:0001049!1.74e-49!57;UBERON:0005068!1.74e-49!57;UBERON:0006241!1.74e-49!57;UBERON:0007135!1.74e-49!57;UBERON:0000955!7.14e-49!69;UBERON:0006238!7.14e-49!69;UBERON:0002616!1.01e-47!59;UBERON:0000200!4.96e-47!6;UBERON:0001017!9.48e-41!82;UBERON:0005743!9.88e-39!86;UBERON:0003056!3.90e-37!61;UBERON:0000073!8.48e-35!94;UBERON:0001016!8.48e-35!94;UBERON:0003075!7.65e-32!86;UBERON:0007284!7.65e-32!86;UBERON:0007023!9.74e-32!115;UBERON:0002346!2.73e-30!90;UBERON:0000033!6.76e-29!123;UBERON:0000153!2.13e-27!129;UBERON:0007811!2.13e-27!129;UBERON:0002771!6.87e-25!3;UBERON:0000349!6.90e-25!5;UBERON:0004121!5.48e-18!169;UBERON:0000924!1.71e-17!173;UBERON:0006601!1.71e-17!173;UBERON:0001870!8.55e-17!2;UBERON:0001954!1.73e-16!2;UBERON:0003022!1.73e-16!2;UBERON:0002421!1.73e-16!2;UBERON:0002600!1.73e-16!2;UBERON:0001871!3.45e-16!7;UBERON:0001872!7.59e-15!5;UBERON:0002021!3.64e-14!5;UBERON:0000025!3.17e-12!194;UBERON:0002702!2.60e-09!1;UBERON:0000064!3.37e-09!219;UBERON:0003112!3.58e-09!1;UBERON:0000032!3.58e-09!1;UBERON:0005253!3.58e-09!1;UBERON:0003128!3.58e-09!1;UBERON:0002241!3.58e-09!1;UBERON:0001703!3.58e-09!1;UBERON:0004761!3.58e-09!1;UBERON:0009617!3.58e-09!1;UBERON:0004111!3.86e-09!241;UBERON:0002581!4.19e-09!1;UBERON:0001882!4.54e-09!1;UBERON:0005403!4.54e-09!1;UBERON:0007190!4.91e-09!1;UBERON:0002022!9.91e-09!1;UBERON:0002902!1.07e-08!1;UBERON:0009899!1.07e-08!1;UBERON:0000477!4.05e-08!286;UBERON:0000475!3.30e-07!365|ontology_enrichment_uberon_v019=UBERON:0000200;5.98e-34;6!UBERON:0002771;4.90e-26;2!UBERON:0002702;4.90e-26;2!UBERON:0001950;4.59e-22;20!UBERON:0002619;3.07e-20;22!UBERON:0000956;5.04e-18;25!UBERON:0000203;5.04e-18;25!UBERON:0001870;7.35e-18;3!UBERON:0003528;1.04e-11;34!UBERON:0002020;1.04e-11;34!UBERON:0001893;1.04e-11;34!UBERON:0002791;1.05e-11;32!UBERON:0001869;1.05e-11;32!UBERON:0001872;3.42e-11;5!UBERON:0001871;1.96e-08;6!UBERON:0002780;2.62e-08;41!UBERON:0001890;2.62e-08;41!UBERON:0000955;5.90e-08;68|ontology_enrichment_uberon_v019_2=UBERON:0000200,5.98e-34,6;UBERON:0002702,4.32e-26,2;UBERON:0002771,5.56e-26,2;UBERON:0001950,4.43e-22,20;UBERON:0002619,2.97e-20,22;UBERON:0000956,4.90e-18,25;UBERON:0000203,4.90e-18,25;UBERON:0001870,6.76e-18,3;UBERON:0002791,2.01e-14,32;UBERON:0001869,2.01e-14,32;UBERON:0003528,1.18e-13,34;UBERON:0002020,1.18e-13,34;UBERON:0001893,1.18e-13,34;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0002780,1.56e-11,41;UBERON:0001890,1.56e-11,41;UBERON:0003080,1.56e-11,41;UBERON:0006240,1.56e-11,41;UBERON:0001872,3.26e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.61e-09,53;UBERON:0002616,3.61e-09,53;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0001871,2.03e-08,6;UBERON:0003056,4.28e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.976210119215705,2.8793914062495,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76516872303461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.638535436228605,0.205116364240755,0,0.0691572524642179,0.645902582527404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,1.2401207790071,0.824405532520789,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:175757825..175757858,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1123 | |||
|description=CAGE_peak_at_chr2:175757825..175757858,- | |||
|id=chr2:175757825..175757858,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!5.36e-73!22;UBERON:0001869!1.26e-64!32;UBERON:0000956!2.82e-64!25;UBERON:0000203!2.82e-64!25;UBERON:0001893!9.14e-61!34;UBERON:0002020!1.24e-60!34;UBERON:0003528!1.24e-60!34;UBERON:0001950!4.57e-60!20;UBERON:0002780!2.53e-56!41;UBERON:0001890!2.53e-56!41;UBERON:0006240!2.53e-56!41;UBERON:0002791!2.30e-55!33;UBERON:0003080!6.10e-55!42;UBERON:0001049!1.74e-49!57;UBERON:0005068!1.74e-49!57;UBERON:0006241!1.74e-49!57;UBERON:0007135!1.74e-49!57;UBERON:0000955!7.14e-49!69;UBERON:0006238!7.14e-49!69;UBERON:0002616!1.01e-47!59;UBERON:0000200!4.96e-47!6;UBERON:0001017!9.48e-41!82;UBERON:0005743!9.88e-39!86;UBERON:0003056!3.90e-37!61;UBERON:0000073!8.48e-35!94;UBERON:0001016!8.48e-35!94;UBERON:0003075!7.65e-32!86;UBERON:0007284!7.65e-32!86;UBERON:0007023!9.74e-32!115;UBERON:0002346!2.73e-30!90;UBERON:0000033!6.76e-29!123;UBERON:0000153!2.13e-27!129;UBERON:0007811!2.13e-27!129;UBERON:0002771!6.87e-25!3;UBERON:0000349!6.90e-25!5;UBERON:0004121!5.48e-18!169;UBERON:0000924!1.71e-17!173;UBERON:0006601!1.71e-17!173;UBERON:0001870!8.55e-17!2;UBERON:0001954!1.73e-16!2;UBERON:0003022!1.73e-16!2;UBERON:0002421!1.73e-16!2;UBERON:0002600!1.73e-16!2;UBERON:0001871!3.45e-16!7;UBERON:0001872!7.59e-15!5;UBERON:0002021!3.64e-14!5;UBERON:0000025!3.17e-12!194;UBERON:0002702!2.60e-09!1;UBERON:0000064!3.37e-09!219;UBERON:0003112!3.58e-09!1;UBERON:0000032!3.58e-09!1;UBERON:0005253!3.58e-09!1;UBERON:0003128!3.58e-09!1;UBERON:0002241!3.58e-09!1;UBERON:0001703!3.58e-09!1;UBERON:0004761!3.58e-09!1;UBERON:0009617!3.58e-09!1;UBERON:0004111!3.86e-09!241;UBERON:0002581!4.19e-09!1;UBERON:0001882!4.54e-09!1;UBERON:0005403!4.54e-09!1;UBERON:0007190!4.91e-09!1;UBERON:0002022!9.91e-09!1;UBERON:0002902!1.07e-08!1;UBERON:0009899!1.07e-08!1;UBERON:0000477!4.05e-08!286;UBERON:0000475!3.30e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;5.98e-34;6!UBERON:0002771;4.90e-26;2!UBERON:0002702;4.90e-26;2!UBERON:0001950;4.59e-22;20!UBERON:0002619;3.07e-20;22!UBERON:0000956;5.04e-18;25!UBERON:0000203;5.04e-18;25!UBERON:0001870;7.35e-18;3!UBERON:0003528;1.04e-11;34!UBERON:0002020;1.04e-11;34!UBERON:0001893;1.04e-11;34!UBERON:0002791;1.05e-11;32!UBERON:0001869;1.05e-11;32!UBERON:0001872;3.42e-11;5!UBERON:0001871;1.96e-08;6!UBERON:0002780;2.62e-08;41!UBERON:0001890;2.62e-08;41!UBERON:0000955;5.90e-08;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000200,5.98e-34,6;UBERON:0002702,4.32e-26,2;UBERON:0002771,5.56e-26,2;UBERON:0001950,4.43e-22,20;UBERON:0002619,2.97e-20,22;UBERON:0000956,4.90e-18,25;UBERON:0000203,4.90e-18,25;UBERON:0001870,6.76e-18,3;UBERON:0002791,2.01e-14,32;UBERON:0001869,2.01e-14,32;UBERON:0003528,1.18e-13,34;UBERON:0002020,1.18e-13,34;UBERON:0001893,1.18e-13,34;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0002780,1.56e-11,41;UBERON:0001890,1.56e-11,41;UBERON:0003080,1.56e-11,41;UBERON:0006240,1.56e-11,41;UBERON:0001872,3.26e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.61e-09,53;UBERON:0002616,3.61e-09,53;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0001871,2.03e-08,6;UBERON:0003056,4.28e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.976210119215705,2.8793914062495,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76516872303461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.638535436228605,0.205116364240755,0,0.0691572524642179,0.645902582527404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,1.2401207790071,0.824405532520789,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:175757825..175757858,- | |||
}} |
Revision as of 14:48, 12 September 2013
Short description: | p@chr2:175757825..175757858, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:175757825..175757858, - |
Coexpression cluster: | C1123_medial_middle_parietal_occipital_paracentral_frontal_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gyrus | 5.98e-34 | 6 |
middle frontal gyrus | 4.32e-26 | 2 |
middle temporal gyrus | 5.56e-26 | 2 |
neocortex | 4.43e-22 | 20 |
regional part of cerebral cortex | 2.97e-20 | 22 |
cerebral cortex | 4.90e-18 | 25 |
pallium | 4.90e-18 | 25 |
frontal cortex | 6.76e-18 | 3 |
regional part of telencephalon | 2.01e-14 | 32 |
cerebral hemisphere | 2.01e-14 | 32 |
brain grey matter | 1.18e-13 | 34 |
gray matter | 1.18e-13 | 34 |
telencephalon | 1.18e-13 | 34 |
brain | 3.68e-12 | 68 |
future brain | 3.68e-12 | 68 |
regional part of forebrain | 1.56e-11 | 41 |
forebrain | 1.56e-11 | 41 |
anterior neural tube | 1.56e-11 | 41 |
future forebrain | 1.56e-11 | 41 |
parietal lobe | 3.26e-11 | 5 |
central nervous system | 2.17e-10 | 81 |
nervous system | 1.88e-09 | 89 |
regional part of nervous system | 3.61e-09 | 53 |
regional part of brain | 3.61e-09 | 53 |
neural tube | 9.89e-09 | 56 |
neural rod | 9.89e-09 | 56 |
future spinal cord | 9.89e-09 | 56 |
neural keel | 9.89e-09 | 56 |
temporal lobe | 2.03e-08 | 6 |
pre-chordal neural plate | 4.28e-08 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.