FFCP PHASE1:Mm9::chr10:79479441..79479478,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70719|HGNC=|MCL_coexpression_id=36|UniProt=|association_with_transcript=-5bp_to_ENSMUST00000140974_5end|description=CAGE_peak_1_at_Hmha1_5end|id=chr10:79479441..79479478,+|ontology_enrichment_celltype=CL:0000988!8.29e-15!32;CL:0002032!8.29e-15!32;CL:0000037!8.29e-15!32;CL:0000566!8.29e-15!32;CL:0000837!8.29e-15!32;CL:0002031!2.45e-13!25;CL:0000049!1.85e-09!19;CL:0002320!3.59e-09!46;CL:0000134!3.59e-09!46;CL:0000763!2.07e-08!16;CL:0000738!2.32e-08!17;CL:0002087!2.32e-08!17;CL:0000838!1.99e-07!12;CL:0000839!3.13e-07!13;CL:0000084!8.10e-07!11;CL:0000827!8.10e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,6.77e-15,32;CL:0002032,6.77e-15,32;CL:0000037,6.77e-15,32;CL:0000837,6.77e-15,32;CL:0002031,2.05e-13,25;CL:0000049,1.64e-09,19;CL:0002320,2.28e-09,46;CL:0000134,2.28e-09,46;CL:0000763,1.86e-08,16;CL:0000738,2.09e-08,17;CL:0002087,2.09e-08,17;CL:0000838,1.82e-07,12;CL:0000839,2.87e-07,13;CL:0000084,7.47e-07,11;CL:0000827,7.47e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.87e-21!70;UBERON:0002193!2.29e-19!48;UBERON:0002390!4.23e-18!45;UBERON:0003061!4.23e-18!45;UBERON:0005057!5.63e-12!51;UBERON:0004177!3.73e-10!29;UBERON:0003081!1.16e-09!88;UBERON:0001041!3.49e-09!92;UBERON:0002384!3.59e-09!46;UBERON:0000077!4.93e-09!97;UBERON:0002371!6.13e-09!16;UBERON:0001474!3.13e-08!22;UBERON:0004765!3.13e-08!22;UBERON:0001434!3.13e-08!22;UBERON:0000926!3.47e-08!193;UBERON:0004120!3.47e-08!193;UBERON:0006603!3.47e-08!193;UBERON:0003408!7.08e-08!24;UBERON:0002370!1.27e-07!23;UBERON:0000974!1.27e-07!23;UBERON:0004807!1.27e-07!23;UBERON:0005058!1.27e-07!23;UBERON:0003351!1.27e-07!23;UBERON:0009113!1.27e-07!23;UBERON:0003295!1.27e-07!23;UBERON:0009722!1.27e-07!23;UBERON:0005562!1.27e-07!23;UBERON:0007690!1.27e-07!23;UBERON:0006562!2.17e-07!24;UBERON:0001557!2.17e-07!24;UBERON:0001042!2.17e-07!24;UBERON:0008814!2.17e-07!24;UBERON:0009145!2.17e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.37e-20,48;UBERON:0002405,9.37e-20,48;UBERON:0002390,1.78e-18,45;UBERON:0003061,1.78e-18,45;UBERON:0004177,1.90e-10,29;UBERON:0005057,1.90e-10,29;UBERON:0001041,5.50e-10,80;UBERON:0000077,6.73e-10,35;UBERON:0002384,2.28e-09,46;UBERON:0003081,2.42e-09,87;UBERON:0002371,5.48e-09,16;UBERON:0001474,3.16e-08,22;UBERON:0004765,3.16e-08,22;UBERON:0001434,3.16e-08,22;UBERON:0003408,3.85e-08,24;UBERON:0002370,6.92e-08,23;UBERON:0000974,6.92e-08,23;UBERON:0004807,6.92e-08,23;UBERON:0005058,6.92e-08,23;UBERON:0003351,6.92e-08,23;UBERON:0009113,6.92e-08,23;UBERON:0003295,6.92e-08,23;UBERON:0009722,6.92e-08,23;UBERON:0005562,6.92e-08,23;UBERON:0007690,6.92e-08,23;UBERON:0006562,1.21e-07,24;UBERON:0001557,1.21e-07,24;UBERON:0001042,1.21e-07,24;UBERON:0008814,1.21e-07,24;UBERON:0009145,1.21e-07,24|phase1_expression=1.28119077683835,0,0,0,0,0,0,447.670562371945,76.1666986840517,69.2830997913101,13.6974374580404,10.9287857823611,522.847029209902,585.192173792769,47.3015861778241,58.1104017408801,31.4802845157666,244.798640317992,224.319213378989,215.165553461601,17.9441342218757,75.6597048150746,61.3819504476498,23.3588937278374,21.3350631392468,0,0,0,2.09025761402011,4.53654233567875,5.54326276638262,78.1087728355346,54.7407660950267,15.8481681015439,0,0.166234645358492,0,288.368293577729,145.328374081427,174.333406743275,381.174004244097,365.429334452768,273.827839109571,0,0,0,0,0,0,0.194429899074283,0.279972843250725,0,248.150474359392,498.323791561794,428.183500107499,1.02903774414379,1.71920063963254,2.57836046138721,0.809265843438391,0,0.633831403506179,0,0,140.384355895898,151.296553472747,162.699946322657,58.4220215510889,36.1165207002261,0.311068836925433,0.675029691658453,0.210324961351382,1.71390590642282,3.53389665522582,0.857435594504678,0.0958454710182364,0,3.30347642998166,2.29837208553338,1.99688493233117,0.131886287730194,0.274462930807229,0,2.51264699101243,2.25105044012672,2.90316670775939,1.76777151284201,1.28134512719193,1.86399445825301,2.87759534666099,0.377857800533928,74.4951735963312,24.0918685554788,0,0.539703191637817,2.59910566979068,0.896053774194671,19.1004411379183,0,0,0,0.14084341977668,0,0,0,0,0,0,16.5566625592637,211.293313056092,14.1020032111584,2.4287945747259,2.43572382649713,2.7673859670727,2.71300752994721,4.11560474974967,2.89033160058254,0.741584903203122,15.6167305473505,103.499434578135,9.05894359705491,38.8681072490293,38.3051449976825,5.59175283654366,0.585561594023094,1.25668024088073,12.7728527604296,43.1334448221313,31.7948447426506,43.3309474319151,2.39665023047716,4.11750542536764,0.376963056338593,3.99795936442236,2.30143911597297,2.49345653471472,2.27137768294861,4.58277137326423,52.126520685629,3.53811861807145,1.68353484709179,1.30120442962704,0.459804208866946,1.62055916824814,1.50704817835715,1.08858398642125,1.15302348256365,1.78033276663485,1.81092359517311,1.07783996466421,1.13463648100692,1.75951124163949,2.84954452155847,2.50242524303038,3.83077383174383,3.08673204611915,0.59710280045548,39.3239384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| ||
|EntrezGene=70719 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENSMUST00000140974_5end | |||
|description=CAGE_peak_1_at_Hmha1_5end | |||
|id=chr10:79479441..79479478,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.29e-15!32;CL:0002032!8.29e-15!32;CL:0000037!8.29e-15!32;CL:0000566!8.29e-15!32;CL:0000837!8.29e-15!32;CL:0002031!2.45e-13!25;CL:0000049!1.85e-09!19;CL:0002320!3.59e-09!46;CL:0000134!3.59e-09!46;CL:0000763!2.07e-08!16;CL:0000738!2.32e-08!17;CL:0002087!2.32e-08!17;CL:0000838!1.99e-07!12;CL:0000839!3.13e-07!13;CL:0000084!8.10e-07!11;CL:0000827!8.10e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.77e-15,32;CL:0002032,6.77e-15,32;CL:0000037,6.77e-15,32;CL:0000837,6.77e-15,32;CL:0002031,2.05e-13,25;CL:0000049,1.64e-09,19;CL:0002320,2.28e-09,46;CL:0000134,2.28e-09,46;CL:0000763,1.86e-08,16;CL:0000738,2.09e-08,17;CL:0002087,2.09e-08,17;CL:0000838,1.82e-07,12;CL:0000839,2.87e-07,13;CL:0000084,7.47e-07,11;CL:0000827,7.47e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.87e-21!70;UBERON:0002193!2.29e-19!48;UBERON:0002390!4.23e-18!45;UBERON:0003061!4.23e-18!45;UBERON:0005057!5.63e-12!51;UBERON:0004177!3.73e-10!29;UBERON:0003081!1.16e-09!88;UBERON:0001041!3.49e-09!92;UBERON:0002384!3.59e-09!46;UBERON:0000077!4.93e-09!97;UBERON:0002371!6.13e-09!16;UBERON:0001474!3.13e-08!22;UBERON:0004765!3.13e-08!22;UBERON:0001434!3.13e-08!22;UBERON:0000926!3.47e-08!193;UBERON:0004120!3.47e-08!193;UBERON:0006603!3.47e-08!193;UBERON:0003408!7.08e-08!24;UBERON:0002370!1.27e-07!23;UBERON:0000974!1.27e-07!23;UBERON:0004807!1.27e-07!23;UBERON:0005058!1.27e-07!23;UBERON:0003351!1.27e-07!23;UBERON:0009113!1.27e-07!23;UBERON:0003295!1.27e-07!23;UBERON:0009722!1.27e-07!23;UBERON:0005562!1.27e-07!23;UBERON:0007690!1.27e-07!23;UBERON:0006562!2.17e-07!24;UBERON:0001557!2.17e-07!24;UBERON:0001042!2.17e-07!24;UBERON:0008814!2.17e-07!24;UBERON:0009145!2.17e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.37e-20,48;UBERON:0002405,9.37e-20,48;UBERON:0002390,1.78e-18,45;UBERON:0003061,1.78e-18,45;UBERON:0004177,1.90e-10,29;UBERON:0005057,1.90e-10,29;UBERON:0001041,5.50e-10,80;UBERON:0000077,6.73e-10,35;UBERON:0002384,2.28e-09,46;UBERON:0003081,2.42e-09,87;UBERON:0002371,5.48e-09,16;UBERON:0001474,3.16e-08,22;UBERON:0004765,3.16e-08,22;UBERON:0001434,3.16e-08,22;UBERON:0003408,3.85e-08,24;UBERON:0002370,6.92e-08,23;UBERON:0000974,6.92e-08,23;UBERON:0004807,6.92e-08,23;UBERON:0005058,6.92e-08,23;UBERON:0003351,6.92e-08,23;UBERON:0009113,6.92e-08,23;UBERON:0003295,6.92e-08,23;UBERON:0009722,6.92e-08,23;UBERON:0005562,6.92e-08,23;UBERON:0007690,6.92e-08,23;UBERON:0006562,1.21e-07,24;UBERON:0001557,1.21e-07,24;UBERON:0001042,1.21e-07,24;UBERON:0008814,1.21e-07,24;UBERON:0009145,1.21e-07,24 | |||
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| |||
|short_description=p1@Hmha1 | |||
}} |
Revision as of 17:33, 12 September 2013
Short description: | p1@Hmha1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hmha1_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | -5bp_to_ENSMUST00000140974_5end |
EntrezGene: | Hmha1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.77e-15 | 32 |
hematopoietic oligopotent progenitor cell | 6.77e-15 | 32 |
hematopoietic stem cell | 6.77e-15 | 32 |
hematopoietic multipotent progenitor cell | 6.77e-15 | 32 |
hematopoietic lineage restricted progenitor cell | 2.05e-13 | 25 |
common myeloid progenitor | 1.64e-09 | 19 |
connective tissue cell | 2.28e-09 | 46 |
mesenchymal cell | 2.28e-09 | 46 |
myeloid cell | 1.86e-08 | 16 |
leukocyte | 2.09e-08 | 17 |
nongranular leukocyte | 2.09e-08 | 17 |
lymphoid lineage restricted progenitor cell | 1.82e-07 | 12 |
myeloid lineage restricted progenitor cell | 2.87e-07 | 13 |
T cell | 7.47e-07 | 11 |
pro-T cell | 7.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.37e-20 | 48 |
immune system | 9.37e-20 | 48 |
hematopoietic system | 1.78e-18 | 45 |
blood island | 1.78e-18 | 45 |
hemopoietic organ | 1.90e-10 | 29 |
immune organ | 1.90e-10 | 29 |
foregut | 5.50e-10 | 80 |
mixed endoderm/mesoderm-derived structure | 6.73e-10 | 35 |
connective tissue | 2.28e-09 | 46 |
lateral plate mesoderm | 2.42e-09 | 87 |
bone marrow | 5.48e-09 | 16 |
bone element | 3.16e-08 | 22 |
skeletal element | 3.16e-08 | 22 |
skeletal system | 3.16e-08 | 22 |
gland of gut | 3.85e-08 | 24 |
thymus | 6.92e-08 | 23 |
neck | 6.92e-08 | 23 |
respiratory system epithelium | 6.92e-08 | 23 |
hemolymphoid system gland | 6.92e-08 | 23 |
pharyngeal epithelium | 6.92e-08 | 23 |
thymic region | 6.92e-08 | 23 |
pharyngeal gland | 6.92e-08 | 23 |
entire pharyngeal arch endoderm | 6.92e-08 | 23 |
thymus primordium | 6.92e-08 | 23 |
early pharyngeal endoderm | 6.92e-08 | 23 |
pharynx | 1.21e-07 | 24 |
upper respiratory tract | 1.21e-07 | 24 |
chordate pharynx | 1.21e-07 | 24 |
pharyngeal arch system | 1.21e-07 | 24 |
pharyngeal region of foregut | 1.21e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.