FFCP PHASE1:Hg19::chr2:241976606..241976617,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25992|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24696|TSSclassifier=S|UniProt=|association_with_transcript=-19bp_to_ENST00000401644_5end|coexpression_cluster_id=C4211|description=CAGE_peak_12_at_SNED1_5end|id=chr2:241976606..241976617,+|ontology_enrichment_celltype=CL:0000542!8.92e-33!53;CL:0000051!8.92e-33!53;CL:0000838!1.36e-30!52;CL:0000945!1.79e-30!24;CL:0000826!1.79e-30!24;CL:0000236!1.87e-21!14;CL:0002087!5.98e-19!119;CL:0000738!7.26e-15!140;CL:0002031!5.07e-14!124;CL:0000080!5.04e-13!6;CL:0000988!2.03e-12!182;CL:0000037!1.32e-10!172;CL:0000566!1.32e-10!172;CL:0002032!1.20e-09!165;CL:0000837!1.20e-09!165;CL:0000785!1.36e-07!2;CL:0000955!1.36e-07!2;CL:0000818!1.36e-07!2;CL:0000954!1.36e-07!2;CL:0000816!1.36e-07!2;CL:0000815!3.48e-07!2;CL:0000792!3.48e-07!2;CL:0002677!3.48e-07!2|ontology_enrichment_celltype_v019=CL:0000945;1.53e-32;24!CL:0000236;2.96e-19;13!CL:0000542;2.88e-12;53!CL:0000785;1.06e-11;1!CL:0000819;1.06e-11;1|ontology_enrichment_celltype_v019_2=CL:0000945,9.12e-33,24;CL:0000826,9.12e-33,24;CL:0000542,2.45e-21,53;CL:0000051,2.45e-21,53;CL:0000236,4.62e-18,14;CL:0000838,6.95e-18,52;CL:0000819,8.62e-12,1;CL:0000988,6.87e-09,177;CL:0002087,7.36e-09,115;CL:0000738,3.03e-07,136;CL:0002031,7.23e-07,120|ontology_enrichment_development_v019=CL:0000051;2.88e-12;53!UBERON:0001045;2.96e-11;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060073;1.06e-11;1!DOID:8675;1.06e-11;1!DOID:12603;1.06e-11;1!DOID:0060058;9.54e-10;10|ontology_enrichment_disease_v019_2=DOID:0060073,8.62e-12,1;DOID:8675,8.62e-12,1;DOID:12603,9.57e-12,1;DOID:0060058,1.01e-09,10|ontology_enrichment_uberon=UBERON:0000178!5.19e-12!15;UBERON:0000179!5.19e-12!15;UBERON:0000463!5.19e-12!15;UBERON:0004177!3.66e-07!7|ontology_enrichment_uberon_v019=UBERON:0001154;2.96e-11;1!UBERON:0001153;2.96e-11;1!UBERON:0009854;2.96e-11;1!UBERON:0002331;1.72e-09;10|ontology_enrichment_uberon_v019_2=UBERON:0001154,3.28e-11,1;UBERON:0001153,3.28e-11,1;UBERON:0001045,3.28e-11,1;UBERON:0002331,1.32e-09,10;UBERON:0000358,1.32e-09,10;UBERON:0000307,1.32e-09,10;UBERON:0000091,1.32e-09,10;UBERON:0000087,1.32e-09,10;UBERON:0007010,1.32e-09,10;UBERON:0007806,1.32e-09,10;UBERON:0008780,1.32e-09,10;UBERON:0005728,1.32e-09,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.23150884174919,1.73163718890094,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0.889509253863555,1.70692089026603,0.800791974072025,0,1.98313461835459,0,0.569212969109448,1.76171156811282,2.6759125968766,0,0,0,0.196709770113833,0,0,0.167186495390678,0.32592226663359,0,0,1.55974639639243,0.883817722424512,0.664601683750863,0.541607727530031,0.25618263945135,1.30059347559878,0.164437904603676,0,0.579606171470105,0.296573126324121,0.267540828089713,0,0.339928028092699,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,2.78704762688578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33732061132974,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,1.63407695278485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77912677208373,1.85345908419754,1.67075119208729,0,0,0,2.91927662745066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.246346371159628,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67943716437971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02520268501629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.576169937778896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657887425858975,0.128915775947154,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENST00000401644_5end | |||
|coexpression_cluster_id=C4211 | |||
|description=CAGE_peak_12_at_SNED1_5end | |||
|id=chr2:241976606..241976617,+ | |||
|ontology_enrichment_celltype=CL:0000542!8.92e-33!53;CL:0000051!8.92e-33!53;CL:0000838!1.36e-30!52;CL:0000945!1.79e-30!24;CL:0000826!1.79e-30!24;CL:0000236!1.87e-21!14;CL:0002087!5.98e-19!119;CL:0000738!7.26e-15!140;CL:0002031!5.07e-14!124;CL:0000080!5.04e-13!6;CL:0000988!2.03e-12!182;CL:0000037!1.32e-10!172;CL:0000566!1.32e-10!172;CL:0002032!1.20e-09!165;CL:0000837!1.20e-09!165;CL:0000785!1.36e-07!2;CL:0000955!1.36e-07!2;CL:0000818!1.36e-07!2;CL:0000954!1.36e-07!2;CL:0000816!1.36e-07!2;CL:0000815!3.48e-07!2;CL:0000792!3.48e-07!2;CL:0002677!3.48e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.53e-32;24!CL:0000236;2.96e-19;13!CL:0000542;2.88e-12;53!CL:0000785;1.06e-11;1!CL:0000819;1.06e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,9.12e-33,24;CL:0000826,9.12e-33,24;CL:0000542,2.45e-21,53;CL:0000051,2.45e-21,53;CL:0000236,4.62e-18,14;CL:0000838,6.95e-18,52;CL:0000819,8.62e-12,1;CL:0000988,6.87e-09,177;CL:0002087,7.36e-09,115;CL:0000738,3.03e-07,136;CL:0002031,7.23e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;2.88e-12;53!UBERON:0001045;2.96e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.06e-11;1!DOID:8675;1.06e-11;1!DOID:12603;1.06e-11;1!DOID:0060058;9.54e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,8.62e-12,1;DOID:8675,8.62e-12,1;DOID:12603,9.57e-12,1;DOID:0060058,1.01e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.19e-12!15;UBERON:0000179!5.19e-12!15;UBERON:0000463!5.19e-12!15;UBERON:0004177!3.66e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.96e-11;1!UBERON:0001153;2.96e-11;1!UBERON:0009854;2.96e-11;1!UBERON:0002331;1.72e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,3.28e-11,1;UBERON:0001153,3.28e-11,1;UBERON:0001045,3.28e-11,1;UBERON:0002331,1.32e-09,10;UBERON:0000358,1.32e-09,10;UBERON:0000307,1.32e-09,10;UBERON:0000091,1.32e-09,10;UBERON:0000087,1.32e-09,10;UBERON:0007010,1.32e-09,10;UBERON:0007806,1.32e-09,10;UBERON:0008780,1.32e-09,10;UBERON:0005728,1.32e-09,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91033514369878,1.23150884174919,1.73163718890094,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0.889509253863555,1.70692089026603,0.800791974072025,0,1.98313461835459,0,0.569212969109448,1.76171156811282,2.6759125968766,0,0,0,0.196709770113833,0,0,0.167186495390678,0.32592226663359,0,0,1.55974639639243,0.883817722424512,0.664601683750863,0.541607727530031,0.25618263945135,1.30059347559878,0.164437904603676,0,0.579606171470105,0.296573126324121,0.267540828089713,0,0.339928028092699,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,2.78704762688578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33732061132974,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,1.63407695278485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77912677208373,1.85345908419754,1.67075119208729,0,0,0,2.91927662745066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.246346371159628,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67943716437971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02520268501629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.576169937778896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657887425858975,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.322944549180031,2.66921271472189,0,0,0,0,0,0.5388164241167,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p12@SNED1 | |||
}} |
Revision as of 17:49, 12 September 2013
Short description: | p12@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_SNED1_5end |
Coexpression cluster: | C4211_diffuse_CD4_lymphoma_acute_thymus_CD19_appendix |
Association with transcript: | -19bp_to_ENST00000401644_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 9.12e-33 | 24 |
pro-B cell | 9.12e-33 | 24 |
lymphocyte | 2.45e-21 | 53 |
common lymphoid progenitor | 2.45e-21 | 53 |
B cell | 4.62e-18 | 14 |
lymphoid lineage restricted progenitor cell | 6.95e-18 | 52 |
B-1 B cell | 8.62e-12 | 1 |
hematopoietic cell | 6.87e-09 | 177 |
nongranular leukocyte | 7.36e-09 | 115 |
leukocyte | 3.03e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 7.23e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 3.28e-11 | 1 |
caecum | 3.28e-11 | 1 |
midgut | 3.28e-11 | 1 |
umbilical cord | 1.32e-09 | 10 |
blastocyst | 1.32e-09 | 10 |
blastula | 1.32e-09 | 10 |
bilaminar disc | 1.32e-09 | 10 |
inner cell mass | 1.32e-09 | 10 |
cleaving embryo | 1.32e-09 | 10 |
connecting stalk | 1.32e-09 | 10 |
inner cell mass derived epiblast | 1.32e-09 | 10 |
extraembryonic mesoderm | 1.32e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 8.62e-12 | 1 |
lymphosarcoma | 8.62e-12 | 1 |
acute leukemia | 9.57e-12 | 1 |
lymphoma | 1.01e-09 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.