FFCP PHASE1:Mm9::chr11:101329478..101329489,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11858|HGNC=|MCL_coexpression_id=52|UniProt=Q9QYM5|association_with_transcript=0bp_to_ENSMUST00000001347_5end|description=CAGE_peak_8_at_Rnd2_5end|id=chr11:101329478..101329489,+|ontology_enrichment_celltype=CL:0000221!7.49e-16!44;CL:0000133!7.49e-16!44;CL:0002319!4.15e-15!43;CL:0000117!4.47e-14!23;CL:0000337!4.47e-14!23;CL:0000055!8.22e-14!50;CL:0000540!2.96e-13!33;CL:0000047!2.96e-13!33;CL:0000031!2.96e-13!33;CL:0000404!2.96e-13!33;CL:0000393!4.11e-11!39;CL:0000211!4.11e-11!39;CL:0002321!1.72e-10!70;CL:0000220!1.72e-10!70|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-24,23;CL:0000337,1.13e-24,23;CL:0000540,9.92e-17,33;CL:0000047,9.92e-17,33;CL:0000031,9.92e-17,33;CL:0000404,9.92e-17,33;CL:0002610,3.66e-16,3;CL:0002614,4.62e-16,3;CL:0002319,7.34e-15,43;CL:0000221,1.75e-14,44;CL:0000133,1.75e-14,44;CL:0000393,6.51e-14,39;CL:0000211,6.51e-14,39;CL:0002611,1.09e-10,2;CL:0002321,3.92e-10,70;CL:0000723,3.14e-07,91;CL:0000048,3.14e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.84e-22!73;UBERON:0005743!3.84e-22!73;UBERON:0000073!9.85e-22!75;UBERON:0001016!9.85e-22!75;UBERON:0001049!1.75e-17!52;UBERON:0005068!1.75e-17!52;UBERON:0006241!1.75e-17!52;UBERON:0007135!1.75e-17!52;UBERON:0004121!2.06e-16!102;UBERON:0000924!2.06e-16!102;UBERON:0006601!2.06e-16!102;UBERON:0002616!1.30e-15!49;UBERON:0002346!1.41e-15!71;UBERON:0003075!1.41e-15!71;UBERON:0007284!1.41e-15!71;UBERON:0000955!5.33e-15!50;UBERON:0006238!5.33e-15!50;UBERON:0000033!1.82e-14!63;UBERON:0002020!4.45e-13!34;UBERON:0003076!3.39e-10!12;UBERON:0003057!3.39e-10!12;UBERON:0002791!1.08e-09!29;UBERON:0003528!1.08e-09!29;UBERON:0001893!1.08e-09!29;UBERON:0003080!1.52e-09!40;UBERON:0003056!5.46e-09!49;UBERON:0002780!6.26e-09!39;UBERON:0001890!6.26e-09!39;UBERON:0006240!6.26e-09!39;UBERON:0007811!2.73e-08!86;UBERON:0000153!8.98e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.66e-16,3;UBERON:0002275,3.66e-16,3;UBERON:0002038,4.62e-16,3;UBERON:0009663,4.62e-16,3;UBERON:0009661,4.62e-16,3;UBERON:0000125,4.62e-16,3;UBERON:0002308,4.62e-16,3;UBERON:0001017,3.58e-15,73;UBERON:0001016,1.05e-14,75;UBERON:0000073,9.36e-14,54;UBERON:0002240,3.42e-13,6;UBERON:0005174,3.42e-13,6;UBERON:0001137,3.42e-13,6;UBERON:0002950,3.48e-12,4;UBERON:0001891,3.48e-12,4;UBERON:0009616,3.48e-12,4;UBERON:0010286,3.48e-12,4;UBERON:0004121,3.99e-11,95;UBERON:0000924,3.99e-11,95;UBERON:0006601,3.99e-11,95;UBERON:0002256,1.09e-10,2;UBERON:0002420,2.36e-10,8;UBERON:0007245,2.36e-10,8;UBERON:0010009,2.36e-10,8;UBERON:0010011,2.36e-10,8;UBERON:0000454,2.36e-10,8;UBERON:0003076,4.83e-10,12;UBERON:0003057,4.83e-10,12;UBERON:0001049,6.24e-10,52;UBERON:0005068,6.24e-10,52;UBERON:0006241,6.24e-10,52;UBERON:0007135,6.24e-10,52;UBERON:0001948,2.88e-09,5;UBERON:0002315,2.88e-09,5;UBERON:0002020,2.28e-08,34;UBERON:0002346,9.23e-08,64;UBERON:0003075,9.23e-08,64;UBERON:0007284,9.23e-08,64|phase1_expression=0.80074423552397,0,0,0.90739263392049,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0,0,0,0,0,1.23012957516914,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0.782391344348039,0.65407546914134,0,0.388859798148567,0.699932108126813,0,0,0,0,0,0.286533439938757,0,0.809265843438391,0,1.26766280701236,0.338844532069132,0,0,0,0,0.599200221036809,1.15265491596466,0.725827286159344,0.675029691658453,0.630974884054146,2.85650984403804,1.10434270475807,0.367472397644862,0.479227355091182,0,2.20231761998777,3.57524546638526,3.07213066512487,0.131886287730194,1.37231465403614,0.52091337055676,4.18774498502071,2.8138130501584,2.13917546887534,0.883885756421003,1.28134512719193,0.372798891650601,0,0.151143120213571,0.289864488701678,0.860423876981386,0,0,0,0.448026887097336,0,0.170430322578058,0.519572009205738,0,0.985903938436763,0,0,7.11066703153331,0.216491041011214,0,0,0.34255163915718,0,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0.484875253135222,0,0.585561594023094,0.83778682725382,0,0,0,0,0.898743836428936,0.457500602818626,0.502617408451458,0.869121600961382,0.511430914660661,2.28566849015516,0.324482526135515,0,0,0.252722758433675,0,0.130120442962704,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.655912071918102,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0.414251545071004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.308713837137853,0.330418782983798,0,0,0,0,0,0.22237804384487,0,0.474529061544512,0,0,0.397912944082302,0,0,0.432276099749388,0,0.189667900953082,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0.592905254174298,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.179397413521912,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,1.76605648986571,0.703270119553219,0,0,0.315508219416257,0,0.215423397732799,0.238968797952552,0.445597348164788,0,0,0.292255857911312,0,0,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0.214337035031592,0,0,0,0.304464949114599,0,0.63549621259146,0.220528398054962,0,0,0,0,0,0,2.03967832211561,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.129159823477731,0.506868376472335,0.234714477291508,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0.183151624267265,0,0,0.564751842617067,1.38097570952153,0,0.171853182343688,0,0.755393897389701,0.675022500231806,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0,0.192075457214608,0.114870937911227,0.476293691283074,0,0.192909220463705,0.412085900803307,0.147198920134397,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0|short_description=p8@Rnd2}} | ||
|EntrezGene=11858 | |||
|HGNC= | |||
|MCL_coexpression_id=52 | |||
|UniProt=Q9QYM5 | |||
|association_with_transcript=0bp_to_ENSMUST00000001347_5end | |||
|description=CAGE_peak_8_at_Rnd2_5end | |||
|id=chr11:101329478..101329489,+ | |||
|ontology_enrichment_celltype=CL:0000221!7.49e-16!44;CL:0000133!7.49e-16!44;CL:0002319!4.15e-15!43;CL:0000117!4.47e-14!23;CL:0000337!4.47e-14!23;CL:0000055!8.22e-14!50;CL:0000540!2.96e-13!33;CL:0000047!2.96e-13!33;CL:0000031!2.96e-13!33;CL:0000404!2.96e-13!33;CL:0000393!4.11e-11!39;CL:0000211!4.11e-11!39;CL:0002321!1.72e-10!70;CL:0000220!1.72e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-24,23;CL:0000337,1.13e-24,23;CL:0000540,9.92e-17,33;CL:0000047,9.92e-17,33;CL:0000031,9.92e-17,33;CL:0000404,9.92e-17,33;CL:0002610,3.66e-16,3;CL:0002614,4.62e-16,3;CL:0002319,7.34e-15,43;CL:0000221,1.75e-14,44;CL:0000133,1.75e-14,44;CL:0000393,6.51e-14,39;CL:0000211,6.51e-14,39;CL:0002611,1.09e-10,2;CL:0002321,3.92e-10,70;CL:0000723,3.14e-07,91;CL:0000048,3.14e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.84e-22!73;UBERON:0005743!3.84e-22!73;UBERON:0000073!9.85e-22!75;UBERON:0001016!9.85e-22!75;UBERON:0001049!1.75e-17!52;UBERON:0005068!1.75e-17!52;UBERON:0006241!1.75e-17!52;UBERON:0007135!1.75e-17!52;UBERON:0004121!2.06e-16!102;UBERON:0000924!2.06e-16!102;UBERON:0006601!2.06e-16!102;UBERON:0002616!1.30e-15!49;UBERON:0002346!1.41e-15!71;UBERON:0003075!1.41e-15!71;UBERON:0007284!1.41e-15!71;UBERON:0000955!5.33e-15!50;UBERON:0006238!5.33e-15!50;UBERON:0000033!1.82e-14!63;UBERON:0002020!4.45e-13!34;UBERON:0003076!3.39e-10!12;UBERON:0003057!3.39e-10!12;UBERON:0002791!1.08e-09!29;UBERON:0003528!1.08e-09!29;UBERON:0001893!1.08e-09!29;UBERON:0003080!1.52e-09!40;UBERON:0003056!5.46e-09!49;UBERON:0002780!6.26e-09!39;UBERON:0001890!6.26e-09!39;UBERON:0006240!6.26e-09!39;UBERON:0007811!2.73e-08!86;UBERON:0000153!8.98e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.66e-16,3;UBERON:0002275,3.66e-16,3;UBERON:0002038,4.62e-16,3;UBERON:0009663,4.62e-16,3;UBERON:0009661,4.62e-16,3;UBERON:0000125,4.62e-16,3;UBERON:0002308,4.62e-16,3;UBERON:0001017,3.58e-15,73;UBERON:0001016,1.05e-14,75;UBERON:0000073,9.36e-14,54;UBERON:0002240,3.42e-13,6;UBERON:0005174,3.42e-13,6;UBERON:0001137,3.42e-13,6;UBERON:0002950,3.48e-12,4;UBERON:0001891,3.48e-12,4;UBERON:0009616,3.48e-12,4;UBERON:0010286,3.48e-12,4;UBERON:0004121,3.99e-11,95;UBERON:0000924,3.99e-11,95;UBERON:0006601,3.99e-11,95;UBERON:0002256,1.09e-10,2;UBERON:0002420,2.36e-10,8;UBERON:0007245,2.36e-10,8;UBERON:0010009,2.36e-10,8;UBERON:0010011,2.36e-10,8;UBERON:0000454,2.36e-10,8;UBERON:0003076,4.83e-10,12;UBERON:0003057,4.83e-10,12;UBERON:0001049,6.24e-10,52;UBERON:0005068,6.24e-10,52;UBERON:0006241,6.24e-10,52;UBERON:0007135,6.24e-10,52;UBERON:0001948,2.88e-09,5;UBERON:0002315,2.88e-09,5;UBERON:0002020,2.28e-08,34;UBERON:0002346,9.23e-08,64;UBERON:0003075,9.23e-08,64;UBERON:0007284,9.23e-08,64 | |||
|phase1_expression=0.80074423552397,0,0,0.90739263392049,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0,0,0,0,0,1.23012957516914,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0.782391344348039,0.65407546914134,0,0.388859798148567,0.699932108126813,0,0,0,0,0,0.286533439938757,0,0.809265843438391,0,1.26766280701236,0.338844532069132,0,0,0,0,0.599200221036809,1.15265491596466,0.725827286159344,0.675029691658453,0.630974884054146,2.85650984403804,1.10434270475807,0.367472397644862,0.479227355091182,0,2.20231761998777,3.57524546638526,3.07213066512487,0.131886287730194,1.37231465403614,0.52091337055676,4.18774498502071,2.8138130501584,2.13917546887534,0.883885756421003,1.28134512719193,0.372798891650601,0,0.151143120213571,0.289864488701678,0.860423876981386,0,0,0,0.448026887097336,0,0.170430322578058,0.519572009205738,0,0.985903938436763,0,0,7.11066703153331,0.216491041011214,0,0,0.34255163915718,0,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0.484875253135222,0,0.585561594023094,0.83778682725382,0,0,0,0,0.898743836428936,0.457500602818626,0.502617408451458,0.869121600961382,0.511430914660661,2.28566849015516,0.324482526135515,0,0,0.252722758433675,0,0.130120442962704,0,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.655912071918102,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0.414251545071004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.308713837137853,0.330418782983798,0,0,0,0,0,0.22237804384487,0,0.474529061544512,0,0,0.397912944082302,0,0,0.432276099749388,0,0.189667900953082,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0.592905254174298,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.179397413521912,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,1.76605648986571,0.703270119553219,0,0,0.315508219416257,0,0.215423397732799,0.238968797952552,0.445597348164788,0,0,0.292255857911312,0,0,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0.214337035031592,0,0,0,0.304464949114599,0,0.63549621259146,0.220528398054962,0,0,0,0,0,0,2.03967832211561,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.129159823477731,0.506868376472335,0.234714477291508,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0.183151624267265,0,0,0.564751842617067,1.38097570952153,0,0.171853182343688,0,0.755393897389701,0.675022500231806,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0,0.192075457214608,0.114870937911227,0.476293691283074,0,0.192909220463705,0.412085900803307,0.147198920134397,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p8@Rnd2 | |||
}} |
Revision as of 18:15, 12 September 2013
Short description: | p8@Rnd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Rnd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:52 |
Association with transcript: | 0bp_to_ENSMUST00000001347_5end |
EntrezGene: | Rnd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.13e-24 | 23 |
neuroblast (sensu Vertebrata) | 1.13e-24 | 23 |
neuron | 9.92e-17 | 33 |
neuronal stem cell | 9.92e-17 | 33 |
neuroblast | 9.92e-17 | 33 |
electrically signaling cell | 9.92e-17 | 33 |
raphe nuclei neuron | 3.66e-16 | 3 |
neuron of the substantia nigra | 4.62e-16 | 3 |
neural cell | 7.34e-15 | 43 |
ectodermal cell | 1.75e-14 | 44 |
neurectodermal cell | 1.75e-14 | 44 |
electrically responsive cell | 6.51e-14 | 39 |
electrically active cell | 6.51e-14 | 39 |
neuron of the dorsal spinal cord | 1.09e-10 | 2 |
embryonic cell | 3.92e-10 | 70 |
somatic stem cell | 3.14e-07 | 91 |
multi fate stem cell | 3.14e-07 | 91 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.