FFCP PHASE1:Hg19::chr2:56411726..56411742,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=114800|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29400|TSSclassifier=W|UniProt=Q96PX6|association_with_transcript=468bp_to_ENST00000407595,NM_001080433,uc002rzn.2_5end|description=CAGE_peak_3_at_CCDC85A_5end|id=chr2:56411726..56411742,+|ontology_enrichment_celltype=CL:0002139!1.73e-08!24;CL:0000071!3.55e-08!18;CL:0002546!3.55e-08!18;CL:0002620!4.71e-07!23;CL:0000222!4.74e-07!119|ontology_enrichment_celltype_v019=CL:0002139;2.41e-14;24!CL:0000071;6.93e-11;18!CL:0000515;7.75e-09;3!CL:0000197;2.05e-08;6!CL:0000098;2.05e-08;6!CL:0002167;2.05e-08;6!CL:1000413;1.24e-07;9!CL:0000115;1.28e-07;36!CL:0002543;1.72e-07;6|ontology_enrichment_celltype_v019_2=CL:0002139,2.14e-14,24;CL:0000071,4.46e-11,18;CL:0002546,4.46e-11,18;CL:0000115,1.07e-08,36;CL:0000197,1.83e-08,6;CL:0000098,1.83e-08,6;CL:0002167,1.83e-08,6;CL:1000413,9.25e-08,9;CL:0002543,1.34e-07,6;CL:0000213,2.03e-07,58;CL:0000215,2.03e-07,58;CL:0000515,9.72e-07,4|ontology_enrichment_development_v019=CL:0002546;6.93e-11;18!UBERON:0005062;1.87e-07;4!UBERON:0007284;1.87e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!9.08e-19!115;UBERON:0001981!3.35e-13!60;UBERON:0007500!3.35e-13!60;UBERON:0004537!3.35e-13!60;UBERON:0006965!3.35e-13!60;UBERON:0004872!4.49e-13!84;UBERON:0000025!5.81e-13!194;UBERON:0000055!1.28e-12!69;UBERON:0004111!7.20e-11!241;UBERON:0002049!7.71e-11!79;UBERON:0007798!7.71e-11!79;UBERON:0000477!7.94e-11!286;UBERON:0001009!4.79e-10!113;UBERON:0000483!3.83e-09!309;UBERON:0004535!6.85e-09!110;UBERON:0000119!9.13e-09!312;UBERON:0003075!1.34e-08!86;UBERON:0007284!1.34e-08!86;UBERON:0001637!3.37e-08!42;UBERON:0003509!3.37e-08!42;UBERON:0004572!3.37e-08!42;UBERON:0001986!3.55e-08!18;UBERON:0004638!3.55e-08!18;UBERON:0004852!3.55e-08!18;UBERON:0000468!1.02e-07!659;UBERON:0002346!1.19e-07!90;UBERON:0000475!1.61e-07!365;UBERON:0001049!3.86e-07!57;UBERON:0005068!3.86e-07!57;UBERON:0006241!3.86e-07!57;UBERON:0007135!3.86e-07!57|ontology_enrichment_uberon_v019=UBERON:0004638;6.93e-11;18!UBERON:0001986;6.93e-11;18!UBERON:0004852;6.93e-11;18!UBERON:0003978;7.85e-10;3!UBERON:0000946;7.85e-10;3!UBERON:0004151;2.19e-09;3!UBERON:0000487;1.35e-08;22!UBERON:0003915;1.24e-07;9!UBERON:0004700;1.24e-07;9!UBERON:0001917;1.24e-07;9!UBERON:0002133;1.88e-07;2!UBERON:0001638;2.08e-07;9!UBERON:0003920;2.08e-07;9!UBERON:0004582;2.08e-07;9!UBERON:0006914;2.29e-07;25!UBERON:0002081;5.43e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.93e-14,68;UBERON:0007500,2.75e-12,59;UBERON:0001981,2.75e-12,59;UBERON:0004537,2.75e-12,59;UBERON:0006965,2.75e-12,59;UBERON:0001009,4.21e-12,112;UBERON:0002049,1.03e-11,78;UBERON:0007798,1.03e-11,78;UBERON:0004638,4.46e-11,18;UBERON:0001986,4.46e-11,18;UBERON:0004852,4.46e-11,18;UBERON:0004872,1.57e-10,83;UBERON:0004535,1.60e-10,109;UBERON:0004797,5.93e-10,7;UBERON:0003978,7.11e-10,3;UBERON:0009751,7.11e-10,3;UBERON:0000946,7.11e-10,3;UBERON:0002523,7.11e-10,3;UBERON:0005983,7.11e-10,3;UBERON:0002165,7.11e-10,3;UBERON:0002062,7.11e-10,3;UBERON:0007280,7.11e-10,3;UBERON:0004151,2.26e-09,3;UBERON:0000487,9.49e-09,22;UBERON:0003915,9.25e-08,9;UBERON:0004700,9.25e-08,9;UBERON:0001917,9.25e-08,9;UBERON:0002133,1.56e-07,2;UBERON:0006914,1.69e-07,25;UBERON:0001638,2.45e-07,9;UBERON:0003920,2.45e-07,9;UBERON:0004582,2.45e-07,9;UBERON:0002081,4.89e-07,2;UBERON:0010227,4.89e-07,2|phase1_expression=0.908391896352783,1.2846031433459,0.563817616383885,2.00146596706261,0,1.74467704820074,0,0,0,0,0,0,0,0.247532705920093,0.994192127183747,0,0.602694528023977,1.46062018077475,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0.50133791063589,0.434539556882471,0,0,0.0945348171640679,0,0.087834785693126,0.589405839739707,0,0,0,0.522389211897802,0.664789802594326,0,0,0,1.78886166630035,0,1.04142150482278,1.69592382577203,2.51699661725944,1.37559020970034,0.835979866147242,2.06733407335463,2.84613010149368,1.00416183829401,0,0,0.732186172644509,0.367663080345869,0.81014194788176,1.7859945656816,0.673588117878509,1.35133776579987,1.53316637465883,0,1.09921046358244,0,0,0,0,1.01304409331664,0,0.860509862246441,1.06400514659507,0.560677600142307,0,0.49333509683432,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0.438977620880838,0,0,0.113432183160021,1.4351170855109,0.85422955527427,0.211931901159562,1.50045548042201,0.721367704669072,0.515281080091258,0.37223371266318,1.5189869901714,0.974370051611986,0.757301322732344,0.644349290496095,0.323292113637624,1.42003837006646,0.906768884048762,0.847802961552438,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0.241011029883482,0.11029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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=114800 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29400 | |||
|TSSclassifier=W | |||
|UniProt=Q96PX6 | |||
|association_with_transcript=468bp_to_ENST00000407595,NM_001080433,uc002rzn.2_5end | |||
|description=CAGE_peak_3_at_CCDC85A_5end | |||
|id=chr2:56411726..56411742,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.73e-08!24;CL:0000071!3.55e-08!18;CL:0002546!3.55e-08!18;CL:0002620!4.71e-07!23;CL:0000222!4.74e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.41e-14;24!CL:0000071;6.93e-11;18!CL:0000515;7.75e-09;3!CL:0000197;2.05e-08;6!CL:0000098;2.05e-08;6!CL:0002167;2.05e-08;6!CL:1000413;1.24e-07;9!CL:0000115;1.28e-07;36!CL:0002543;1.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.14e-14,24;CL:0000071,4.46e-11,18;CL:0002546,4.46e-11,18;CL:0000115,1.07e-08,36;CL:0000197,1.83e-08,6;CL:0000098,1.83e-08,6;CL:0002167,1.83e-08,6;CL:1000413,9.25e-08,9;CL:0002543,1.34e-07,6;CL:0000213,2.03e-07,58;CL:0000215,2.03e-07,58;CL:0000515,9.72e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002546;6.93e-11;18!UBERON:0005062;1.87e-07;4!UBERON:0007284;1.87e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.08e-19!115;UBERON:0001981!3.35e-13!60;UBERON:0007500!3.35e-13!60;UBERON:0004537!3.35e-13!60;UBERON:0006965!3.35e-13!60;UBERON:0004872!4.49e-13!84;UBERON:0000025!5.81e-13!194;UBERON:0000055!1.28e-12!69;UBERON:0004111!7.20e-11!241;UBERON:0002049!7.71e-11!79;UBERON:0007798!7.71e-11!79;UBERON:0000477!7.94e-11!286;UBERON:0001009!4.79e-10!113;UBERON:0000483!3.83e-09!309;UBERON:0004535!6.85e-09!110;UBERON:0000119!9.13e-09!312;UBERON:0003075!1.34e-08!86;UBERON:0007284!1.34e-08!86;UBERON:0001637!3.37e-08!42;UBERON:0003509!3.37e-08!42;UBERON:0004572!3.37e-08!42;UBERON:0001986!3.55e-08!18;UBERON:0004638!3.55e-08!18;UBERON:0004852!3.55e-08!18;UBERON:0000468!1.02e-07!659;UBERON:0002346!1.19e-07!90;UBERON:0000475!1.61e-07!365;UBERON:0001049!3.86e-07!57;UBERON:0005068!3.86e-07!57;UBERON:0006241!3.86e-07!57;UBERON:0007135!3.86e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.93e-11;18!UBERON:0001986;6.93e-11;18!UBERON:0004852;6.93e-11;18!UBERON:0003978;7.85e-10;3!UBERON:0000946;7.85e-10;3!UBERON:0004151;2.19e-09;3!UBERON:0000487;1.35e-08;22!UBERON:0003915;1.24e-07;9!UBERON:0004700;1.24e-07;9!UBERON:0001917;1.24e-07;9!UBERON:0002133;1.88e-07;2!UBERON:0001638;2.08e-07;9!UBERON:0003920;2.08e-07;9!UBERON:0004582;2.08e-07;9!UBERON:0006914;2.29e-07;25!UBERON:0002081;5.43e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.93e-14,68;UBERON:0007500,2.75e-12,59;UBERON:0001981,2.75e-12,59;UBERON:0004537,2.75e-12,59;UBERON:0006965,2.75e-12,59;UBERON:0001009,4.21e-12,112;UBERON:0002049,1.03e-11,78;UBERON:0007798,1.03e-11,78;UBERON:0004638,4.46e-11,18;UBERON:0001986,4.46e-11,18;UBERON:0004852,4.46e-11,18;UBERON:0004872,1.57e-10,83;UBERON:0004535,1.60e-10,109;UBERON:0004797,5.93e-10,7;UBERON:0003978,7.11e-10,3;UBERON:0009751,7.11e-10,3;UBERON:0000946,7.11e-10,3;UBERON:0002523,7.11e-10,3;UBERON:0005983,7.11e-10,3;UBERON:0002165,7.11e-10,3;UBERON:0002062,7.11e-10,3;UBERON:0007280,7.11e-10,3;UBERON:0004151,2.26e-09,3;UBERON:0000487,9.49e-09,22;UBERON:0003915,9.25e-08,9;UBERON:0004700,9.25e-08,9;UBERON:0001917,9.25e-08,9;UBERON:0002133,1.56e-07,2;UBERON:0006914,1.69e-07,25;UBERON:0001638,2.45e-07,9;UBERON:0003920,2.45e-07,9;UBERON:0004582,2.45e-07,9;UBERON:0002081,4.89e-07,2;UBERON:0010227,4.89e-07,2 | |||
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| |||
|short_description=p3@CCDC85A | |||
}} |
Revision as of 19:06, 12 September 2013
Short description: | p3@CCDC85A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CCDC85A_5end |
Coexpression cluster: | NA |
Association with transcript: | 468bp_to_ENST00000407595, NM_001080433, uc002rzn.2_5end |
EntrezGene: | CCDC85A |
HGNC: | 29400 |
UniProt: | Q96PX6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.14e-14 | 24 |
blood vessel endothelial cell | 4.46e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.46e-11 | 18 |
endothelial cell | 1.07e-08 | 36 |
receptor cell | 1.83e-08 | 6 |
sensory epithelial cell | 1.83e-08 | 6 |
olfactory epithelial cell | 1.83e-08 | 6 |
endothelial cell of artery | 9.25e-08 | 9 |
vein endothelial cell | 1.34e-07 | 6 |
lining cell | 2.03e-07 | 58 |
barrier cell | 2.03e-07 | 58 |
skeletal muscle myoblast | 9.72e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.93e-14 | 68 |
epithelial tube open at both ends | 2.75e-12 | 59 |
blood vessel | 2.75e-12 | 59 |
blood vasculature | 2.75e-12 | 59 |
vascular cord | 2.75e-12 | 59 |
circulatory system | 4.21e-12 | 112 |
vasculature | 1.03e-11 | 78 |
vascular system | 1.03e-11 | 78 |
blood vessel endothelium | 4.46e-11 | 18 |
endothelium | 4.46e-11 | 18 |
cardiovascular system endothelium | 4.46e-11 | 18 |
splanchnic layer of lateral plate mesoderm | 1.57e-10 | 83 |
cardiovascular system | 1.60e-10 | 109 |
blood vessel layer | 5.93e-10 | 7 |
valve | 7.11e-10 | 3 |
cardiac mesenchyme | 7.11e-10 | 3 |
cardial valve | 7.11e-10 | 3 |
tunica intima | 7.11e-10 | 3 |
heart layer | 7.11e-10 | 3 |
endocardium | 7.11e-10 | 3 |
endocardial cushion | 7.11e-10 | 3 |
presumptive endocardium | 7.11e-10 | 3 |
cardiac chamber | 2.26e-09 | 3 |
simple squamous epithelium | 9.49e-09 | 22 |
endothelial tube | 9.25e-08 | 9 |
arterial system endothelium | 9.25e-08 | 9 |
endothelium of artery | 9.25e-08 | 9 |
atrioventricular valve | 1.56e-07 | 2 |
squamous epithelium | 1.69e-07 | 25 |
vein | 2.45e-07 | 9 |
venous blood vessel | 2.45e-07 | 9 |
venous system | 2.45e-07 | 9 |
cardiac atrium | 4.89e-07 | 2 |
future cardiac atrium | 4.89e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.