FFCP PHASE1:Mm9::chr11:22187072..22187093,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=216565|HGNC=|MCL_coexpression_id=0|UniProt=Q69ZW3|association_with_transcript=-274bp_to_NM_001252515,NM_153078,uc007ieb.1_5end|description=CAGE_peak_5_at_Ehbp1_5end|id=chr11:22187072..22187093,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.22e-10!52;UBERON:0005068!8.22e-10!52;UBERON:0006241!8.22e-10!52;UBERON:0007135!8.22e-10!52;UBERON:0002346!5.83e-09!71;UBERON:0003075!5.83e-09!71;UBERON:0007284!5.83e-09!71;UBERON:0002020!8.17e-09!34;UBERON:0000955!1.36e-08!50;UBERON:0006238!1.36e-08!50;UBERON:0000033!1.49e-08!63;UBERON:0002616!3.86e-08!49;UBERON:0004121!5.96e-08!102;UBERON:0000924!5.96e-08!102;UBERON:0006601!5.96e-08!102;UBERON:0003056!7.97e-08!49;UBERON:0003080!8.02e-08!40;UBERON:0002780!1.47e-07!39;UBERON:0001890!1.47e-07!39;UBERON:0006240!1.47e-07!39;UBERON:0002791!1.48e-07!29;UBERON:0003528!1.48e-07!29;UBERON:0001893!1.48e-07!29;UBERON:0000073!1.72e-07!75;UBERON:0001016!1.72e-07!75;UBERON:0001017!2.60e-07!73;UBERON:0005743!2.60e-07!73;UBERON:0004111!4.87e-07!122;UBERON:0000025!6.44e-07!114;UBERON:0002021!8.41e-07!10;UBERON:0000411!8.41e-07!10;UBERON:0001950!8.41e-07!10;UBERON:0000956!9.03e-07!21;UBERON:0001869!9.03e-07!21;UBERON:0000203!9.03e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.97e-13,54;UBERON:0001049,2.07e-13,52;UBERON:0005068,2.07e-13,52;UBERON:0006241,2.07e-13,52;UBERON:0007135,2.07e-13,52;UBERON:0000955,1.83e-12,47;UBERON:0006238,1.83e-12,47;UBERON:0002616,1.13e-11,46;UBERON:0003080,6.82e-11,40;UBERON:0002346,8.20e-11,64;UBERON:0003075,8.20e-11,64;UBERON:0007284,8.20e-11,64;UBERON:0002020,1.13e-10,34;UBERON:0002619,1.16e-10,17;UBERON:0002780,1.94e-10,39;UBERON:0001890,1.94e-10,39;UBERON:0006240,1.94e-10,39;UBERON:0002021,3.09e-10,10;UBERON:0000411,3.09e-10,10;UBERON:0001950,3.09e-10,10;UBERON:0003528,7.11e-10,29;UBERON:0002791,7.11e-10,29;UBERON:0001893,7.11e-10,29;UBERON:0010371,1.37e-09,73;UBERON:0000956,2.05e-09,21;UBERON:0001869,2.05e-09,21;UBERON:0000203,2.05e-09,21;UBERON:0001016,2.56e-09,75;UBERON:0003056,2.83e-09,49;UBERON:0001017,3.51e-09,73;UBERON:0004121,1.80e-07,95;UBERON:0000924,1.80e-07,95;UBERON:0006601,1.80e-07,95;UBERON:0000025,7.17e-07,114|phase1_expression=0.320297694209588,0,0,0,1.00179145989269,0.503637815735669,0,0.258246646883153,0,0,0.171217968225505,0.159544317990673,0.171200729931206,0.262261207256992,0,0,0,0,0.137114433605739,0,9.69493507722195,0.297872853602656,0.522399578277871,0.639969691173627,0,0.57423196411502,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,1.1554064790051,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.755380907853464,0.608261587317087,0.367093504323363,0,0.218025156380447,0.219686182734472,0.58328969722285,0.419959264876088,0,0,0,0,0.257259436035947,0.85960031981627,0.515672092277442,0.606949382578793,0.528990979272033,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.768436610643109,0.622137673850866,0.810035629990144,0.630974884054146,1.14260393761521,1.10434270475807,1.22490799214954,1.43768206527355,0,0,1.27687338085188,1.22885226604995,1.05509030184155,0.914876436024097,0,0.837548997004143,1.12552522006336,2.29197371665215,1.47314292736834,0.854230084794618,0.745597783301202,0.530083353332288,1.058001841495,0.579728977403356,0,0.679971333707751,0,0,0,1.12355536105401,0.852151612890289,0.259786004602869,0,0.845060518660083,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.91347103775248,0.776813650941515,1.1875371125186,0.346970653532272,0,0.461230994512117,0.753613202763113,1.17588707135705,0.502666365318702,0.741584903203122,0.578397427679647,0,0.485300549842228,0,0.969750506270444,0,2.34224637609238,0.83778682725382,0.510914110417183,0,0,0.127070227073065,1.04853447583376,3.20250421973039,0.502617408451458,3.65031072403781,4.34716277461562,1.24672826735736,1.46017136760982,0.81471491080253,0.497627882440372,0.252722758433675,0.631325567659422,0.910843100738926,0.229902104433473,0.900310649026746,0.452114453507145,1.15662048557257,0.512454881139399,0.468508622798644,1.29351685369508,0.646703978798527,0.756424320671277,0.703804496655795,0.43839146485515,0.834141747676794,0.348252166522167,0.411564272815887,0.59710280045548,0.702213187313235,0,0,1.03562886267751,0.469052119962192,0.540186184383045,0.710234206755631,0.983821158737019,0.771335564436891,0.465067889500816,0,0.467061369468678,0.658239399653922,0.985004784474571,0.56748166682099,0.438599962275997,0.878200461164203,0.134206418760372,2.94405927989778,1.54356918568927,0.660837565967596,0.264450566663544,0.639864751605702,0.464473343720877,0.257734922644187,0.80673409849337,0.22237804384487,0.190225626112559,1.42358718463353,0.823494773620054,0.754005626400808,0.198956472041151,0.58489226135736,0,1.29682829924817,0.796565093017469,0.379335801906163,0.685491075658373,1.1270773567308,0.610953983535943,0.581857461502877,0.701358198903186,0.569128834118316,0.295220295959204,0.784993639206874,0.246794327843601,0.592905254174298,0.166845105716094,0,0.224862112384854,0,0,0.50925170356284,0.287696137450811,0.162135226775035,0.549122826376163,1.43768206527355,1.11642284300551,0.624075346229121,0.757736633841335,0.538192240565737,0,2.40179147216586,0.189491411770485,0.977789858652155,1.18821560042632,0.704070744865506,2.1775813467436,0.476087281772027,1.17080188714679,1.57635144106191,1.32878813789265,1.2756381492599,0.491589944147214,1.20879487306127,1.15719246865209,0,0.54390568381871,0,0.827810238914197,1.28440471990234,1.28932855251423,0.327869890753351,0.504941854408746,0.631016438832513,0.390438744296638,0.430846795465598,0.955875191810208,0.891194696329576,0,0,0,0.790575555893047,1.92792789853084,0.851640511249612,0.35613120733451,0.162886959353576,0.659880491890142,0,0.728341908464944,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0.363533729477506,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.18006109403131,0.129358683782755,0.857348140126369,1.06404140185364,1.42695054081656,0.658196082408484,0,1.40803024838226,2.1183207086382,0.441056796109924,0.98931751764888,0.484393280087717,1.02531972377865,1.07435109602823,0.164140899745061,1.45740418314925,2.03967832211561,0,0.82554747185289,1.11116716421827,0.565105371014073,0.136694227721025,0,0.339956859987711,0.279902904647316,0,0,0.316335993581135,2.43983360552218,1.29606408986162,0.627264888043406,0.218362563746178,0.944050424693745,0.330613822901344,0.523511883968059,0.388844919875379,0.621339313086926,45.0954350947352,0.149516546043979,0.330916980914195,1.36115831840833,1.54991788173277,1.35164900392623,0.352071715937262,1.0416350787516,1.99232754408851,22.4673232368186,30.8192106695916,0,0.608175645870493,0.513554785824136,0.51968329191118,0.358053391334963,0.198681354781265,0.480781798079875,0.295379054349154,0.302899349844443,0.304827226619999,0,0,0.0962118416403295,0.233753804363138,0.680191150845634,0.665957860122194,0.538283139656854,0.167884616364078,0.579568782096571,0.93841237725591,0.36630324853453,1.07184189539533,0.501572104035363,1.6942555278512,3.22227665555024,4.01026859407578,3.26521046453006,2.74033007908257,8.3093328712867,0.675022500231806,1.80128481289688,3.62513927187364,4.65984280576638,0.415149390336707,1.19707462020309,0.853668028770671,0.972426868273176,0.419226325255965,0.735374033800057,0.666740183404846,0.412070114477788,1.28367683836726,0.252697211763798,1.01391719956096,0.377252682772152,0.468207537349412,1.08842759088278,0.861532034334199,1.90517476513229,1.15884325944855,0.964546102318525,0.412085900803307,0.735994600671987,0.685738504770831,0.887379030796687,0.953744759789284,1.0174249164263,0.941093804153306,0.930760686808441,1.09756783723664,1.31534855718921,0.950628796921032,1.12228454331548,0.593175090620871,0.591026894253381,0.818462086339379,0.929621047115796,0,0.499621155875892,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,0.927471342481686|short_description=p5@Ehbp1}} | ||
|EntrezGene=216565 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q69ZW3 | |||
|association_with_transcript=-274bp_to_NM_001252515,NM_153078,uc007ieb.1_5end | |||
|description=CAGE_peak_5_at_Ehbp1_5end | |||
|id=chr11:22187072..22187093,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.22e-10!52;UBERON:0005068!8.22e-10!52;UBERON:0006241!8.22e-10!52;UBERON:0007135!8.22e-10!52;UBERON:0002346!5.83e-09!71;UBERON:0003075!5.83e-09!71;UBERON:0007284!5.83e-09!71;UBERON:0002020!8.17e-09!34;UBERON:0000955!1.36e-08!50;UBERON:0006238!1.36e-08!50;UBERON:0000033!1.49e-08!63;UBERON:0002616!3.86e-08!49;UBERON:0004121!5.96e-08!102;UBERON:0000924!5.96e-08!102;UBERON:0006601!5.96e-08!102;UBERON:0003056!7.97e-08!49;UBERON:0003080!8.02e-08!40;UBERON:0002780!1.47e-07!39;UBERON:0001890!1.47e-07!39;UBERON:0006240!1.47e-07!39;UBERON:0002791!1.48e-07!29;UBERON:0003528!1.48e-07!29;UBERON:0001893!1.48e-07!29;UBERON:0000073!1.72e-07!75;UBERON:0001016!1.72e-07!75;UBERON:0001017!2.60e-07!73;UBERON:0005743!2.60e-07!73;UBERON:0004111!4.87e-07!122;UBERON:0000025!6.44e-07!114;UBERON:0002021!8.41e-07!10;UBERON:0000411!8.41e-07!10;UBERON:0001950!8.41e-07!10;UBERON:0000956!9.03e-07!21;UBERON:0001869!9.03e-07!21;UBERON:0000203!9.03e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.97e-13,54;UBERON:0001049,2.07e-13,52;UBERON:0005068,2.07e-13,52;UBERON:0006241,2.07e-13,52;UBERON:0007135,2.07e-13,52;UBERON:0000955,1.83e-12,47;UBERON:0006238,1.83e-12,47;UBERON:0002616,1.13e-11,46;UBERON:0003080,6.82e-11,40;UBERON:0002346,8.20e-11,64;UBERON:0003075,8.20e-11,64;UBERON:0007284,8.20e-11,64;UBERON:0002020,1.13e-10,34;UBERON:0002619,1.16e-10,17;UBERON:0002780,1.94e-10,39;UBERON:0001890,1.94e-10,39;UBERON:0006240,1.94e-10,39;UBERON:0002021,3.09e-10,10;UBERON:0000411,3.09e-10,10;UBERON:0001950,3.09e-10,10;UBERON:0003528,7.11e-10,29;UBERON:0002791,7.11e-10,29;UBERON:0001893,7.11e-10,29;UBERON:0010371,1.37e-09,73;UBERON:0000956,2.05e-09,21;UBERON:0001869,2.05e-09,21;UBERON:0000203,2.05e-09,21;UBERON:0001016,2.56e-09,75;UBERON:0003056,2.83e-09,49;UBERON:0001017,3.51e-09,73;UBERON:0004121,1.80e-07,95;UBERON:0000924,1.80e-07,95;UBERON:0006601,1.80e-07,95;UBERON:0000025,7.17e-07,114 | |||
|phase1_expression=0.320297694209588,0,0,0,1.00179145989269,0.503637815735669,0,0.258246646883153,0,0,0.171217968225505,0.159544317990673,0.171200729931206,0.262261207256992,0,0,0,0,0.137114433605739,0,9.69493507722195,0.297872853602656,0.522399578277871,0.639969691173627,0,0.57423196411502,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,1.1554064790051,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.755380907853464,0.608261587317087,0.367093504323363,0,0.218025156380447,0.219686182734472,0.58328969722285,0.419959264876088,0,0,0,0,0.257259436035947,0.85960031981627,0.515672092277442,0.606949382578793,0.528990979272033,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.768436610643109,0.622137673850866,0.810035629990144,0.630974884054146,1.14260393761521,1.10434270475807,1.22490799214954,1.43768206527355,0,0,1.27687338085188,1.22885226604995,1.05509030184155,0.914876436024097,0,0.837548997004143,1.12552522006336,2.29197371665215,1.47314292736834,0.854230084794618,0.745597783301202,0.530083353332288,1.058001841495,0.579728977403356,0,0.679971333707751,0,0,0,1.12355536105401,0.852151612890289,0.259786004602869,0,0.845060518660083,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.91347103775248,0.776813650941515,1.1875371125186,0.346970653532272,0,0.461230994512117,0.753613202763113,1.17588707135705,0.502666365318702,0.741584903203122,0.578397427679647,0,0.485300549842228,0,0.969750506270444,0,2.34224637609238,0.83778682725382,0.510914110417183,0,0,0.127070227073065,1.04853447583376,3.20250421973039,0.502617408451458,3.65031072403781,4.34716277461562,1.24672826735736,1.46017136760982,0.81471491080253,0.497627882440372,0.252722758433675,0.631325567659422,0.910843100738926,0.229902104433473,0.900310649026746,0.452114453507145,1.15662048557257,0.512454881139399,0.468508622798644,1.29351685369508,0.646703978798527,0.756424320671277,0.703804496655795,0.43839146485515,0.834141747676794,0.348252166522167,0.411564272815887,0.59710280045548,0.702213187313235,0,0,1.03562886267751,0.469052119962192,0.540186184383045,0.710234206755631,0.983821158737019,0.771335564436891,0.465067889500816,0,0.467061369468678,0.658239399653922,0.985004784474571,0.56748166682099,0.438599962275997,0.878200461164203,0.134206418760372,2.94405927989778,1.54356918568927,0.660837565967596,0.264450566663544,0.639864751605702,0.464473343720877,0.257734922644187,0.80673409849337,0.22237804384487,0.190225626112559,1.42358718463353,0.823494773620054,0.754005626400808,0.198956472041151,0.58489226135736,0,1.29682829924817,0.796565093017469,0.379335801906163,0.685491075658373,1.1270773567308,0.610953983535943,0.581857461502877,0.701358198903186,0.569128834118316,0.295220295959204,0.784993639206874,0.246794327843601,0.592905254174298,0.166845105716094,0,0.224862112384854,0,0,0.50925170356284,0.287696137450811,0.162135226775035,0.549122826376163,1.43768206527355,1.11642284300551,0.624075346229121,0.757736633841335,0.538192240565737,0,2.40179147216586,0.189491411770485,0.977789858652155,1.18821560042632,0.704070744865506,2.1775813467436,0.476087281772027,1.17080188714679,1.57635144106191,1.32878813789265,1.2756381492599,0.491589944147214,1.20879487306127,1.15719246865209,0,0.54390568381871,0,0.827810238914197,1.28440471990234,1.28932855251423,0.327869890753351,0.504941854408746,0.631016438832513,0.390438744296638,0.430846795465598,0.955875191810208,0.891194696329576,0,0,0,0.790575555893047,1.92792789853084,0.851640511249612,0.35613120733451,0.162886959353576,0.659880491890142,0,0.728341908464944,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0.363533729477506,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.18006109403131,0.129358683782755,0.857348140126369,1.06404140185364,1.42695054081656,0.658196082408484,0,1.40803024838226,2.1183207086382,0.441056796109924,0.98931751764888,0.484393280087717,1.02531972377865,1.07435109602823,0.164140899745061,1.45740418314925,2.03967832211561,0,0.82554747185289,1.11116716421827,0.565105371014073,0.136694227721025,0,0.339956859987711,0.279902904647316,0,0,0.316335993581135,2.43983360552218,1.29606408986162,0.627264888043406,0.218362563746178,0.944050424693745,0.330613822901344,0.523511883968059,0.388844919875379,0.621339313086926,45.0954350947352,0.149516546043979,0.330916980914195,1.36115831840833,1.54991788173277,1.35164900392623,0.352071715937262,1.0416350787516,1.99232754408851,22.4673232368186,30.8192106695916,0,0.608175645870493,0.513554785824136,0.51968329191118,0.358053391334963,0.198681354781265,0.480781798079875,0.295379054349154,0.302899349844443,0.304827226619999,0,0,0.0962118416403295,0.233753804363138,0.680191150845634,0.665957860122194,0.538283139656854,0.167884616364078,0.579568782096571,0.93841237725591,0.36630324853453,1.07184189539533,0.501572104035363,1.6942555278512,3.22227665555024,4.01026859407578,3.26521046453006,2.74033007908257,8.3093328712867,0.675022500231806,1.80128481289688,3.62513927187364,4.65984280576638,0.415149390336707,1.19707462020309,0.853668028770671,0.972426868273176,0.419226325255965,0.735374033800057,0.666740183404846,0.412070114477788,1.28367683836726,0.252697211763798,1.01391719956096,0.377252682772152,0.468207537349412,1.08842759088278,0.861532034334199,1.90517476513229,1.15884325944855,0.964546102318525,0.412085900803307,0.735994600671987,0.685738504770831,0.887379030796687,0.953744759789284,1.0174249164263,0.941093804153306,0.930760686808441,1.09756783723664,1.31534855718921,0.950628796921032,1.12228454331548,0.593175090620871,0.591026894253381,0.818462086339379,0.929621047115796,0,0.499621155875892,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,0.927471342481686 | |||
|short_description=p5@Ehbp1 | |||
}} | |||
Revision as of 19:15, 12 September 2013
| Short description: | p5@Ehbp1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Ehbp1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | -274bp_to_NM_001252515, NM_153078, uc007ieb.1_5end |
| EntrezGene: | Ehbp1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 1.97e-13 | 54 |
| neural tube | 2.07e-13 | 52 |
| neural rod | 2.07e-13 | 52 |
| future spinal cord | 2.07e-13 | 52 |
| neural keel | 2.07e-13 | 52 |
| brain | 1.83e-12 | 47 |
| future brain | 1.83e-12 | 47 |
| regional part of brain | 1.13e-11 | 46 |
| anterior neural tube | 6.82e-11 | 40 |
| neurectoderm | 8.20e-11 | 64 |
| neural plate | 8.20e-11 | 64 |
| presumptive neural plate | 8.20e-11 | 64 |
| gray matter | 1.13e-10 | 34 |
| regional part of cerebral cortex | 1.16e-10 | 17 |
| regional part of forebrain | 1.94e-10 | 39 |
| forebrain | 1.94e-10 | 39 |
| future forebrain | 1.94e-10 | 39 |
| occipital lobe | 3.09e-10 | 10 |
| visual cortex | 3.09e-10 | 10 |
| neocortex | 3.09e-10 | 10 |
| brain grey matter | 7.11e-10 | 29 |
| regional part of telencephalon | 7.11e-10 | 29 |
| telencephalon | 7.11e-10 | 29 |
| ecto-epithelium | 1.37e-09 | 73 |
| cerebral cortex | 2.05e-09 | 21 |
| cerebral hemisphere | 2.05e-09 | 21 |
| pallium | 2.05e-09 | 21 |
| nervous system | 2.56e-09 | 75 |
| pre-chordal neural plate | 2.83e-09 | 49 |
| central nervous system | 3.51e-09 | 73 |
| ectoderm-derived structure | 1.80e-07 | 95 |
| ectoderm | 1.80e-07 | 95 |
| presumptive ectoderm | 1.80e-07 | 95 |
| tube | 7.17e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
