FFCP PHASE1:Mm9::chr12:75065468..75065529,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=75627|HGNC=|MCL_coexpression_id=1|UniProt=Q8K0S9|association_with_transcript=0bp_to_ENSMUST00000021532,NM_178392,uc007nwt.1_5end|description=CAGE_peak_1_at_Snapc1_5end|id=chr12:75065468..75065529,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!5.43e-15!86;UBERON:0000153!1.99e-14!94;UBERON:0000033!5.62e-14!63;UBERON:0003056!7.56e-12!49;UBERON:0000955!8.61e-12!50;UBERON:0006238!8.61e-12!50;UBERON:0002346!2.77e-11!71;UBERON:0003075!2.77e-11!71;UBERON:0007284!2.77e-11!71;UBERON:0002616!2.94e-11!49;UBERON:0001049!6.61e-11!52;UBERON:0005068!6.61e-11!52;UBERON:0006241!6.61e-11!52;UBERON:0007135!6.61e-11!52;UBERON:0003080!3.59e-10!40;UBERON:0002780!1.26e-09!39;UBERON:0001890!1.26e-09!39;UBERON:0006240!1.26e-09!39;UBERON:0002791!1.42e-07!29;UBERON:0003528!1.42e-07!29;UBERON:0001893!1.42e-07!29;UBERON:0002020!2.13e-07!34;UBERON:0002021!2.34e-07!10;UBERON:0000411!2.34e-07!10;UBERON:0001950!2.34e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.56e-12,49;UBERON:0000073,3.63e-11,54;UBERON:0000955,5.56e-11,47;UBERON:0006238,5.56e-11,47;UBERON:0001049,6.55e-11,52;UBERON:0005068,6.55e-11,52;UBERON:0006241,6.55e-11,52;UBERON:0007135,6.55e-11,52;UBERON:0010314,7.69e-11,92;UBERON:0002346,8.38e-11,64;UBERON:0003075,8.38e-11,64;UBERON:0007284,8.38e-11,64;UBERON:0002616,1.86e-10,46;UBERON:0003080,3.59e-10,40;UBERON:0002780,1.26e-09,39;UBERON:0001890,1.26e-09,39;UBERON:0006240,1.26e-09,39;UBERON:0010371,2.14e-09,73;UBERON:0003528,1.42e-07,29;UBERON:0002791,1.42e-07,29;UBERON:0001893,1.42e-07,29;UBERON:0002020,2.13e-07,34;UBERON:0002021,2.34e-07,10;UBERON:0000411,2.34e-07,10;UBERON:0001950,2.34e-07,10|phase1_expression=15.0539916278506,5.93258192986914,8.18998630901165,9.0739263392049,9.5170188689806,7.21880869221126,11.2134067485852,17.1734020177296,13.938083493015,11.4691617897777,14.2110913627169,16.59260907103,19.5168832121575,18.3582845079895,5.66286595086627,5.66930748691513,4.19737126876888,14.6689906891581,12.7516423253337,8.91218268775863,13.2667532635669,7.04965753526286,6.79119451761232,7.51964387129011,8.02932483735095,6.31655160526522,4.73838195774982,7.11055067863434,6.08074942260396,7.56090389279792,7.76056787293567,4.44521471421742,2.46025915033828,15.8481681015439,9.24325183204079,8.14549762256613,7.14592746918292,8.78916424547506,10.9386948233332,11.5175223674236,7.05877785637217,6.14740936462601,6.311634589405,8.05739635043695,9.22530074097583,6.9747765821439,0,1.30815093828268,3.29529274101708,2.91644848611425,2.2397827460058,2.87505128729943,15.1004345451963,13.7818806982155,15.1242209614109,4.63066984864705,4.01146815914259,5.15672092277442,9.71119012126069,11.6378015439847,6.33831403506179,1.69422266034566,1.77858959222228,3.1496490104849,0.988866362566974,2.1314403448383,1.79760066311043,0.384218305321555,9.43575472007147,7.69533848490637,7.78202357000113,9.42648248532552,6.84692476950002,7.22695715368229,7.95517409451362,11.0306254393203,8.8092704799511,24.8990309266116,16.7431121249305,9.89147157976454,12.8997577479398,11.9810075228055,16.7509799400829,21.9477417912355,14.6686317865738,9.72274332063103,12.8134512719193,10.6247684120421,5.14938114665652,3.92972112555285,8.98579914975201,8.60423876981386,2.03991400112325,6.47643829965381,3.89865850468601,5.82434953226536,9.69066498909088,9.37366774179318,9.09251016110041,8.12681021373782,7.88723150749411,10.2661181931454,12.7402619853323,21.3320010945999,9.09262372247099,8.36087556067825,13.1436355703844,6.39429726426736,19.6792791571851,13.0629082377046,8.50078101154066,7.61163695780353,10.3776973765226,12.5099791658677,9.40709657085639,10.9329934456818,10.8765785803125,7.22996784599558,4.42305275974937,8.25010934731787,7.50861162765338,8.727754556434,7.45567044872489,25.1791485429931,18.431310199584,6.89734049063197,7.78798309288482,11.3981518888747,8.13249453267614,25.1648274200102,31.1100409916666,21.2355855070741,30.2454317134561,24.8043993610421,27.2202338373024,26.6075671431123,7.63795228877372,8.08645308965605,14.6579199891531,11.5743020737561,8.58794923553845,10.1156925950728,12.9644733459851,13.1113191517072,10.6817303667585,11.0177799444971,11.7127155699661,12.4177617954728,6.89817577385095,9.8335161687266,11.6127741948206,8.98702502953057,7.22922847986555,7.66154766348766,8.84863186554157,10.9468846750171,8.42655824775882,9.77922047035918,8.52490498186778,10.3562886267751,7.27030785941398,9.00310307305074,8.28606574548236,7.87056926989615,12.1871019181029,10.2314935690179,9.65784245038629,7.70651259623319,11.8483091937706,10.342550236983,10.9442892886905,13.4503988431306,13.173006917463,9.26024289446565,26.49653351908,18.6257348406505,4.62586296177317,4.7601101999438,6.61193576659225,9.52170354627798,8.24751752461397,5.24377164020691,7.33847544688072,5.51654315726422,7.59246498471219,5.92916237006439,5.52937459360593,3.18330355265841,7.40863531052657,8.98819408654222,10.59076444386,6.3725207441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| ||
|EntrezGene=75627 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8K0S9 | |||
|association_with_transcript=0bp_to_ENSMUST00000021532,NM_178392,uc007nwt.1_5end | |||
|description=CAGE_peak_1_at_Snapc1_5end | |||
|id=chr12:75065468..75065529,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!5.43e-15!86;UBERON:0000153!1.99e-14!94;UBERON:0000033!5.62e-14!63;UBERON:0003056!7.56e-12!49;UBERON:0000955!8.61e-12!50;UBERON:0006238!8.61e-12!50;UBERON:0002346!2.77e-11!71;UBERON:0003075!2.77e-11!71;UBERON:0007284!2.77e-11!71;UBERON:0002616!2.94e-11!49;UBERON:0001049!6.61e-11!52;UBERON:0005068!6.61e-11!52;UBERON:0006241!6.61e-11!52;UBERON:0007135!6.61e-11!52;UBERON:0003080!3.59e-10!40;UBERON:0002780!1.26e-09!39;UBERON:0001890!1.26e-09!39;UBERON:0006240!1.26e-09!39;UBERON:0002791!1.42e-07!29;UBERON:0003528!1.42e-07!29;UBERON:0001893!1.42e-07!29;UBERON:0002020!2.13e-07!34;UBERON:0002021!2.34e-07!10;UBERON:0000411!2.34e-07!10;UBERON:0001950!2.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.56e-12,49;UBERON:0000073,3.63e-11,54;UBERON:0000955,5.56e-11,47;UBERON:0006238,5.56e-11,47;UBERON:0001049,6.55e-11,52;UBERON:0005068,6.55e-11,52;UBERON:0006241,6.55e-11,52;UBERON:0007135,6.55e-11,52;UBERON:0010314,7.69e-11,92;UBERON:0002346,8.38e-11,64;UBERON:0003075,8.38e-11,64;UBERON:0007284,8.38e-11,64;UBERON:0002616,1.86e-10,46;UBERON:0003080,3.59e-10,40;UBERON:0002780,1.26e-09,39;UBERON:0001890,1.26e-09,39;UBERON:0006240,1.26e-09,39;UBERON:0010371,2.14e-09,73;UBERON:0003528,1.42e-07,29;UBERON:0002791,1.42e-07,29;UBERON:0001893,1.42e-07,29;UBERON:0002020,2.13e-07,34;UBERON:0002021,2.34e-07,10;UBERON:0000411,2.34e-07,10;UBERON:0001950,2.34e-07,10 | |||
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| |||
|short_description=p1@Snapc1 | |||
}} |
Revision as of 23:11, 12 September 2013
Short description: | p1@Snapc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Snapc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000021532, NM_178392, uc007nwt.1_5end |
EntrezGene: | Snapc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 7.56e-12 | 49 |
regional part of nervous system | 3.63e-11 | 54 |
brain | 5.56e-11 | 47 |
future brain | 5.56e-11 | 47 |
neural tube | 6.55e-11 | 52 |
neural rod | 6.55e-11 | 52 |
future spinal cord | 6.55e-11 | 52 |
neural keel | 6.55e-11 | 52 |
structure with developmental contribution from neural crest | 7.69e-11 | 92 |
neurectoderm | 8.38e-11 | 64 |
neural plate | 8.38e-11 | 64 |
presumptive neural plate | 8.38e-11 | 64 |
regional part of brain | 1.86e-10 | 46 |
anterior neural tube | 3.59e-10 | 40 |
regional part of forebrain | 1.26e-09 | 39 |
forebrain | 1.26e-09 | 39 |
future forebrain | 1.26e-09 | 39 |
ecto-epithelium | 2.14e-09 | 73 |
brain grey matter | 1.42e-07 | 29 |
regional part of telencephalon | 1.42e-07 | 29 |
telencephalon | 1.42e-07 | 29 |
gray matter | 2.13e-07 | 34 |
occipital lobe | 2.34e-07 | 10 |
visual cortex | 2.34e-07 | 10 |
neocortex | 2.34e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.