FFCP PHASE1:Hg19::chr7:115863031..115863054,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26136|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14620|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc003vhp.2,uc010lka.1_5end|coexpression_cluster_id=C48|description=CAGE_peak_9_at_TES_5end|id=chr7:115863031..115863054,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002601;9.61e-12;1|ontology_enrichment_celltype_v019_2=CL:0002601,9.61e-12,1|ontology_enrichment_development_v019=UBERON:0007297;3.53e-22;2!UBERON:0005754;3.27e-12;1!UBERON:0005795;4.45e-10;10!UBERON:0006603;6.00e-08;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005156!2.01e-17!59;UBERON:0000990!2.01e-17!59;UBERON:0003101!4.18e-16!22;UBERON:0000079!4.18e-16!22;UBERON:0004175!2.43e-14!25;UBERON:0006947!2.60e-13!3;UBERON:0004054!2.60e-13!3;UBERON:0000162!8.88e-13!14;UBERON:0001353!8.88e-13!14;UBERON:0000163!8.88e-13!14;UBERON:0006866!8.88e-13!14;UBERON:0000164!8.88e-13!14;UBERON:0000931!8.88e-13!14;UBERON:0004122!7.38e-12!15;UBERON:0001046!7.62e-12!19;UBERON:0003133!2.49e-11!48;UBERON:0003937!4.17e-11!12;UBERON:0005399!4.17e-11!12;UBERON:0005904!4.39e-10!4;UBERON:0003135!3.25e-09!11;UBERON:0007023!6.23e-09!115;UBERON:0003064!9.41e-09!37;UBERON:0002367!1.83e-08!11;UBERON:0010147!1.83e-08!11;UBERON:0009846!1.83e-08!11;UBERON:0003353!1.83e-08!11;UBERON:0004902!1.83e-08!11;UBERON:0003820!1.83e-08!11;UBERON:0009847!1.83e-08!11;UBERON:0005795!4.56e-08!22;UBERON:0003975!5.11e-08!22;UBERON:0001155!2.45e-07!9;UBERON:0001008!8.78e-07!45|ontology_enrichment_uberon_v019=UBERON:0006947;1.57e-32;3!UBERON:0004054;1.57e-32;3!UBERON:0004175;4.83e-31;21!UBERON:0005904;1.40e-24;4!UBERON:0003135;1.03e-15;11!UBERON:0003975;2.00e-14;18!UBERON:0000998;3.27e-12;1!UBERON:0006868;3.27e-12;1!UBERON:0001000;3.65e-12;1!UBERON:0005352;3.65e-12;1!UBERON:0006834;4.06e-12;1!UBERON:0005795;4.78e-12;1!UBERON:0003133;5.11e-12;44!UBERON:0003101;5.37e-12;22!UBERON:0000079;5.37e-12;22!UBERON:0001301;9.61e-12;1!UBERON:0000996;1.47e-11;1!UBERON:0001155;4.53e-11;9!UBERON:0000058;3.41e-10;10!UBERON:0000995;3.96e-10;17!UBERON:0002050;2.63e-09;5!UBERON:0005423;2.63e-09;5!UBERON:0005156;3.01e-09;59!UBERON:0000990;3.01e-09;59!UBERON:0000059;3.73e-09;11!UBERON:0003134;3.40e-07;33!UBERON:0001255;8.93e-07;2!UBERON:0001556;8.93e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.41e-32,3;UBERON:0004054,1.41e-32,3;UBERON:0004175,5.33e-26,25;UBERON:0005904,1.29e-24,4;UBERON:0003133,1.36e-16,48;UBERON:0005156,1.85e-16,59;UBERON:0000990,1.85e-16,59;UBERON:0003135,1.03e-15,11;UBERON:0000998,3.27e-12,1;UBERON:0006868,3.27e-12,1;UBERON:0001000,3.65e-12,1;UBERON:0005352,3.65e-12,1;UBERON:0006834,4.06e-12,1;UBERON:0003101,5.37e-12,22;UBERON:0000079,5.37e-12,22;UBERON:0005795,6.47e-12,22;UBERON:0003975,8.15e-12,22;UBERON:0001301,8.64e-12,1;UBERON:0007023,1.26e-11,114;UBERON:0000996,1.47e-11,1;UBERON:0001155,4.53e-11,9;UBERON:0003064,2.23e-09,28;UBERON:0000059,3.73e-09,11;UBERON:0000995,2.96e-08,21;UBERON:0000162,2.30e-07,14;UBERON:0001353,2.30e-07,14;UBERON:0000163,2.30e-07,14;UBERON:0006866,2.30e-07,14;UBERON:0000164,2.30e-07,14;UBERON:0000931,2.30e-07,14;UBERON:0003134,5.65e-07,37;UBERON:0000474,5.65e-07,37;UBERON:0004122,6.64e-07,15;UBERON:0001255,8.93e-07,2;UBERON:0001556,8.93e-07,2|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63723844372141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06778694409284,0,0,0.103052529238439,0,0.37223371266318,0,0.0974370051611986,0,0.276149695926898,0,0,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.229628896329213,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12856638442359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,32.749610671462,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,9.77268282998223,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,2.0345239835768,3.66618086960175,0,0,0,0,0,0,0,0,0,21.3075577538671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97035336011451,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,1.72844298240254,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977734268540344,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,1.05522746615772,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,7.37835072794832,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,26.6733841620285,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,29.4177986104687,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41004141982077,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,17.6027679623328,9.35861210126198,1.33151354837103,0,0|short_description=p9@TES}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=26136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14620 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003vhp.2,uc010lka.1_5end | |||
|coexpression_cluster_id=C48 | |||
|description=CAGE_peak_9_at_TES_5end | |||
|id=chr7:115863031..115863054,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002601;9.61e-12;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002601,9.61e-12,1 | |||
|ontology_enrichment_development_v019=UBERON:0007297;3.53e-22;2!UBERON:0005754;3.27e-12;1!UBERON:0005795;4.45e-10;10!UBERON:0006603;6.00e-08;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005156!2.01e-17!59;UBERON:0000990!2.01e-17!59;UBERON:0003101!4.18e-16!22;UBERON:0000079!4.18e-16!22;UBERON:0004175!2.43e-14!25;UBERON:0006947!2.60e-13!3;UBERON:0004054!2.60e-13!3;UBERON:0000162!8.88e-13!14;UBERON:0001353!8.88e-13!14;UBERON:0000163!8.88e-13!14;UBERON:0006866!8.88e-13!14;UBERON:0000164!8.88e-13!14;UBERON:0000931!8.88e-13!14;UBERON:0004122!7.38e-12!15;UBERON:0001046!7.62e-12!19;UBERON:0003133!2.49e-11!48;UBERON:0003937!4.17e-11!12;UBERON:0005399!4.17e-11!12;UBERON:0005904!4.39e-10!4;UBERON:0003135!3.25e-09!11;UBERON:0007023!6.23e-09!115;UBERON:0003064!9.41e-09!37;UBERON:0002367!1.83e-08!11;UBERON:0010147!1.83e-08!11;UBERON:0009846!1.83e-08!11;UBERON:0003353!1.83e-08!11;UBERON:0004902!1.83e-08!11;UBERON:0003820!1.83e-08!11;UBERON:0009847!1.83e-08!11;UBERON:0005795!4.56e-08!22;UBERON:0003975!5.11e-08!22;UBERON:0001155!2.45e-07!9;UBERON:0001008!8.78e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.57e-32;3!UBERON:0004054;1.57e-32;3!UBERON:0004175;4.83e-31;21!UBERON:0005904;1.40e-24;4!UBERON:0003135;1.03e-15;11!UBERON:0003975;2.00e-14;18!UBERON:0000998;3.27e-12;1!UBERON:0006868;3.27e-12;1!UBERON:0001000;3.65e-12;1!UBERON:0005352;3.65e-12;1!UBERON:0006834;4.06e-12;1!UBERON:0005795;4.78e-12;1!UBERON:0003133;5.11e-12;44!UBERON:0003101;5.37e-12;22!UBERON:0000079;5.37e-12;22!UBERON:0001301;9.61e-12;1!UBERON:0000996;1.47e-11;1!UBERON:0001155;4.53e-11;9!UBERON:0000058;3.41e-10;10!UBERON:0000995;3.96e-10;17!UBERON:0002050;2.63e-09;5!UBERON:0005423;2.63e-09;5!UBERON:0005156;3.01e-09;59!UBERON:0000990;3.01e-09;59!UBERON:0000059;3.73e-09;11!UBERON:0003134;3.40e-07;33!UBERON:0001255;8.93e-07;2!UBERON:0001556;8.93e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.41e-32,3;UBERON:0004054,1.41e-32,3;UBERON:0004175,5.33e-26,25;UBERON:0005904,1.29e-24,4;UBERON:0003133,1.36e-16,48;UBERON:0005156,1.85e-16,59;UBERON:0000990,1.85e-16,59;UBERON:0003135,1.03e-15,11;UBERON:0000998,3.27e-12,1;UBERON:0006868,3.27e-12,1;UBERON:0001000,3.65e-12,1;UBERON:0005352,3.65e-12,1;UBERON:0006834,4.06e-12,1;UBERON:0003101,5.37e-12,22;UBERON:0000079,5.37e-12,22;UBERON:0005795,6.47e-12,22;UBERON:0003975,8.15e-12,22;UBERON:0001301,8.64e-12,1;UBERON:0007023,1.26e-11,114;UBERON:0000996,1.47e-11,1;UBERON:0001155,4.53e-11,9;UBERON:0003064,2.23e-09,28;UBERON:0000059,3.73e-09,11;UBERON:0000995,2.96e-08,21;UBERON:0000162,2.30e-07,14;UBERON:0001353,2.30e-07,14;UBERON:0000163,2.30e-07,14;UBERON:0006866,2.30e-07,14;UBERON:0000164,2.30e-07,14;UBERON:0000931,2.30e-07,14;UBERON:0003134,5.65e-07,37;UBERON:0000474,5.65e-07,37;UBERON:0004122,6.64e-07,15;UBERON:0001255,8.93e-07,2;UBERON:0001556,8.93e-07,2 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63723844372141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06778694409284,0,0,0.103052529238439,0,0.37223371266318,0,0.0974370051611986,0,0.276149695926898,0,0,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.229628896329213,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12856638442359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,32.749610671462,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,9.77268282998223,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,2.0345239835768,3.66618086960175,0,0,0,0,0,0,0,0,0,21.3075577538671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97035336011451,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,1.72844298240254,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977734268540344,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,1.05522746615772,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,7.37835072794832,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,26.6733841620285,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,29.4177986104687,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41004141982077,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,17.6027679623328,9.35861210126198,1.33151354837103,0,0 | |||
|short_description=p9@TES | |||
}} |
Revision as of 22:50, 13 September 2013
Short description: | p9@TES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_TES_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 0bp_to_uc003vhp.2, uc010lka.1_5end |
EntrezGene: | TES |
HGNC: | 14620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
uterine smooth muscle cell | 9.61e-12 | 1 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.41e-32 | 3 |
internal male genitalia | 1.41e-32 | 3 |
internal genitalia | 5.33e-26 | 25 |
duct of male reproductive system | 1.29e-24 | 4 |
reproductive organ | 1.36e-16 | 48 |
reproductive structure | 1.85e-16 | 59 |
reproductive system | 1.85e-16 | 59 |
male reproductive organ | 1.03e-15 | 11 |
seminal vesicle | 3.27e-12 | 1 |
seminal fluid secreting gland | 3.27e-12 | 1 |
vas deferens | 3.65e-12 | 1 |
spermatic cord | 3.65e-12 | 1 |
uterus or analog | 4.06e-12 | 1 |
male organism | 5.37e-12 | 22 |
male reproductive system | 5.37e-12 | 22 |
embryonic uterus | 6.47e-12 | 22 |
internal female genitalia | 8.15e-12 | 22 |
epididymis | 8.64e-12 | 1 |
adult organism | 1.26e-11 | 114 |
vagina | 1.47e-11 | 1 |
colon | 4.53e-11 | 9 |
intermediate mesoderm | 2.23e-09 | 28 |
large intestine | 3.73e-09 | 11 |
uterus | 2.96e-08 | 21 |
cloaca | 2.30e-07 | 14 |
anal region | 2.30e-07 | 14 |
embryonic cloaca | 2.30e-07 | 14 |
terminal part of digestive tract | 2.30e-07 | 14 |
primitive urogenital sinus | 2.30e-07 | 14 |
proctodeum | 2.30e-07 | 14 |
female reproductive organ | 5.65e-07 | 37 |
female reproductive system | 5.65e-07 | 37 |
genitourinary system | 6.64e-07 | 15 |
urinary bladder | 8.93e-07 | 2 |
lower urinary tract | 8.93e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.