FFCP PHASE1:Mm9::chr2:6792577..6792584,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=76|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:6792577..6792584,+|id=chr2:6792577..6792584,+|ontology_enrichment_celltype=CL:0002609!2.42e-16!6;CL:0000540!2.71e-12!33;CL:0000047!2.71e-12!33;CL:0000031!2.71e-12!33;CL:0000404!2.71e-12!33;CL:0000117!1.59e-11!23;CL:0000337!1.59e-11!23;CL:0000393!6.65e-10!39;CL:0000211!6.65e-10!39;CL:0002608!8.57e-09!3;CL:0002319!1.10e-08!43;CL:0000221!2.04e-08!44;CL:0000133!2.04e-08!44;CL:0002613!3.00e-08!3;CL:0000055!4.92e-07!50|ontology_enrichment_celltype_v019_2=CL:0002609,3.91e-58,6;CL:0000117,6.04e-16,23;CL:0000337,6.04e-16,23;CL:0000540,2.20e-11,33;CL:0000047,2.20e-11,33;CL:0000031,2.20e-11,33;CL:0000404,2.20e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.31e-09,43;CL:0000221,9.66e-09,44;CL:0000133,9.66e-09,44;CL:0002608,1.88e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002791!8.65e-11!29;UBERON:0003528!8.65e-11!29;UBERON:0001893!8.65e-11!29;UBERON:0002020!2.45e-10!34;UBERON:0000369!2.73e-08!5;UBERON:0002435!2.73e-08!5;UBERON:0000204!2.73e-08!5;UBERON:0010082!2.73e-08!5;UBERON:0001017!2.23e-07!73;UBERON:0005743!2.23e-07!73;UBERON:0002780!2.46e-07!39;UBERON:0001890!2.46e-07!39;UBERON:0006240!2.46e-07!39;UBERON:0003056!2.71e-07!49;UBERON:0000955!3.12e-07!50;UBERON:0006238!3.12e-07!50;UBERON:0000956!4.13e-07!21;UBERON:0001869!4.13e-07!21;UBERON:0000203!4.13e-07!21;UBERON:0003080!4.37e-07!40;UBERON:0000073!4.52e-07!75;UBERON:0001016!4.52e-07!75;UBERON:0000033!7.71e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-17,21;UBERON:0001869,2.25e-17,21;UBERON:0000203,2.25e-17,21;UBERON:0003528,7.80e-13,29;UBERON:0002791,7.80e-13,29;UBERON:0001893,7.80e-13,29;UBERON:0002020,4.50e-11,34;UBERON:0002780,9.26e-10,39;UBERON:0001890,9.26e-10,39;UBERON:0006240,9.26e-10,39;UBERON:0003080,1.55e-09,40;UBERON:0002616,2.15e-08,46;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0003056,6.29e-08,49;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42175720617976,3.51015439662396,1.89292465216244,0,0,0.489963196859816,1.15014565221884,0.919218786610021,0,0,0.153606533256243,0.263772575460388,0.274462930807229,0.52091337055676,0,0,0,0,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720332286654991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0.292255857911312,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0,0.0936415074698824,0.192075457214608,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0,0,0,0.561142271657738,0.237270036248348,0.0985044823755635,0,0.154936841185966,0,0.499621155875892,0.233931608445408,0,0,0,0|short_description=p@chr2:6792577..6792584,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=76 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:6792577..6792584,+ | |||
|id=chr2:6792577..6792584,+ | |||
|ontology_enrichment_celltype=CL:0002609!2.42e-16!6;CL:0000540!2.71e-12!33;CL:0000047!2.71e-12!33;CL:0000031!2.71e-12!33;CL:0000404!2.71e-12!33;CL:0000117!1.59e-11!23;CL:0000337!1.59e-11!23;CL:0000393!6.65e-10!39;CL:0000211!6.65e-10!39;CL:0002608!8.57e-09!3;CL:0002319!1.10e-08!43;CL:0000221!2.04e-08!44;CL:0000133!2.04e-08!44;CL:0002613!3.00e-08!3;CL:0000055!4.92e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,3.91e-58,6;CL:0000117,6.04e-16,23;CL:0000337,6.04e-16,23;CL:0000540,2.20e-11,33;CL:0000047,2.20e-11,33;CL:0000031,2.20e-11,33;CL:0000404,2.20e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.31e-09,43;CL:0000221,9.66e-09,44;CL:0000133,9.66e-09,44;CL:0002608,1.88e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002791!8.65e-11!29;UBERON:0003528!8.65e-11!29;UBERON:0001893!8.65e-11!29;UBERON:0002020!2.45e-10!34;UBERON:0000369!2.73e-08!5;UBERON:0002435!2.73e-08!5;UBERON:0000204!2.73e-08!5;UBERON:0010082!2.73e-08!5;UBERON:0001017!2.23e-07!73;UBERON:0005743!2.23e-07!73;UBERON:0002780!2.46e-07!39;UBERON:0001890!2.46e-07!39;UBERON:0006240!2.46e-07!39;UBERON:0003056!2.71e-07!49;UBERON:0000955!3.12e-07!50;UBERON:0006238!3.12e-07!50;UBERON:0000956!4.13e-07!21;UBERON:0001869!4.13e-07!21;UBERON:0000203!4.13e-07!21;UBERON:0003080!4.37e-07!40;UBERON:0000073!4.52e-07!75;UBERON:0001016!4.52e-07!75;UBERON:0000033!7.71e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-17,21;UBERON:0001869,2.25e-17,21;UBERON:0000203,2.25e-17,21;UBERON:0003528,7.80e-13,29;UBERON:0002791,7.80e-13,29;UBERON:0001893,7.80e-13,29;UBERON:0002020,4.50e-11,34;UBERON:0002780,9.26e-10,39;UBERON:0001890,9.26e-10,39;UBERON:0006240,9.26e-10,39;UBERON:0003080,1.55e-09,40;UBERON:0002616,2.15e-08,46;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0003056,6.29e-08,49;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42175720617976,3.51015439662396,1.89292465216244,0,0,0.489963196859816,1.15014565221884,0.919218786610021,0,0,0.153606533256243,0.263772575460388,0.274462930807229,0.52091337055676,0,0,0,0,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720332286654991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0.292255857911312,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0,0.0936415074698824,0.192075457214608,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0,0,0,0.561142271657738,0.237270036248348,0.0985044823755635,0,0.154936841185966,0,0.499621155875892,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr2:6792577..6792584,+ | |||
}} |
Revision as of 00:20, 14 September 2013
Short description: | p@chr2:6792577..6792584, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:6792577..6792584, + |
Coexpression cluster: | MCL_coexpression_mm9:76 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 3.91e-58 | 6 |
CNS neuron (sensu Vertebrata) | 6.04e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.04e-16 | 23 |
neuron | 2.20e-11 | 33 |
neuronal stem cell | 2.20e-11 | 33 |
neuroblast | 2.20e-11 | 33 |
electrically signaling cell | 2.20e-11 | 33 |
electrically responsive cell | 9.26e-10 | 39 |
electrically active cell | 9.26e-10 | 39 |
neural cell | 6.31e-09 | 43 |
ectodermal cell | 9.66e-09 | 44 |
neurectodermal cell | 9.66e-09 | 44 |
hippocampal neuron | 1.88e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.25e-17 | 21 |
cerebral hemisphere | 2.25e-17 | 21 |
pallium | 2.25e-17 | 21 |
brain grey matter | 7.80e-13 | 29 |
regional part of telencephalon | 7.80e-13 | 29 |
telencephalon | 7.80e-13 | 29 |
gray matter | 4.50e-11 | 34 |
regional part of forebrain | 9.26e-10 | 39 |
forebrain | 9.26e-10 | 39 |
future forebrain | 9.26e-10 | 39 |
anterior neural tube | 1.55e-09 | 40 |
regional part of brain | 2.15e-08 | 46 |
brain | 3.12e-08 | 47 |
future brain | 3.12e-08 | 47 |
pre-chordal neural plate | 6.29e-08 | 49 |
neural tube | 1.63e-07 | 52 |
neural rod | 1.63e-07 | 52 |
future spinal cord | 1.63e-07 | 52 |
neural keel | 1.63e-07 | 52 |
regional part of nervous system | 2.91e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.