FFCP PHASE1:Mm9::chr4:147534140..147534181,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=230903|HGNC=|MCL_coexpression_id=1|UniProt=A2A7H6,Q8BK26,A2A7H5,A2A7H4|association_with_transcript=0bp_to_NM_001161852,NM_173401,uc008vug.2,uc008vuh.2,uc008vui.2,uc008vuj.2,uc012dpn.1_5end|description=CAGE_peak_2_at_Fbxo44_5end|id=chr4:147534140..147534181,-|ontology_enrichment_celltype=CL:0000117!3.42e-10!23;CL:0000337!3.42e-10!23;CL:0000221!7.18e-09!44;CL:0000133!7.18e-09!44;CL:0002319!1.60e-08!43;CL:0000540!4.39e-08!33;CL:0000047!4.39e-08!33;CL:0000031!4.39e-08!33;CL:0000404!4.39e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.39e-10,23;CL:0000337,1.39e-10,23;CL:0000221,4.17e-09,44;CL:0000133,4.17e-09,44;CL:0002319,9.82e-09,43;CL:0000540,8.98e-08,33;CL:0000047,8.98e-08,33;CL:0000031,8.98e-08,33;CL:0000404,8.98e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.32e-25!73;UBERON:0005743!3.32e-25!73;UBERON:0004121!3.35e-24!102;UBERON:0000924!3.35e-24!102;UBERON:0006601!3.35e-24!102;UBERON:0000073!2.04e-23!75;UBERON:0001016!2.04e-23!75;UBERON:0000033!5.19e-23!63;UBERON:0002346!1.18e-22!71;UBERON:0003075!1.18e-22!71;UBERON:0007284!1.18e-22!71;UBERON:0001049!3.36e-21!52;UBERON:0005068!3.36e-21!52;UBERON:0006241!3.36e-21!52;UBERON:0007135!3.36e-21!52;UBERON:0000955!9.08e-21!50;UBERON:0006238!9.08e-21!50;UBERON:0002616!4.51e-20!49;UBERON:0003056!2.27e-18!49;UBERON:0003080!4.57e-16!40;UBERON:0002780!2.02e-15!39;UBERON:0001890!2.02e-15!39;UBERON:0006240!2.02e-15!39;UBERON:0002020!4.17e-15!34;UBERON:0000153!5.10e-14!94;UBERON:0007811!1.36e-13!86;UBERON:0002791!1.08e-12!29;UBERON:0003528!1.08e-12!29;UBERON:0001893!1.08e-12!29;UBERON:0000956!2.83e-08!21;UBERON:0001869!2.83e-08!21;UBERON:0000203!2.83e-08!21;UBERON:0002619!1.52e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.66e-26,73;UBERON:0004121,4.33e-26,95;UBERON:0000924,4.33e-26,95;UBERON:0006601,4.33e-26,95;UBERON:0001016,7.96e-25,75;UBERON:0000073,1.24e-24,54;UBERON:0002346,5.25e-24,64;UBERON:0003075,5.25e-24,64;UBERON:0007284,5.25e-24,64;UBERON:0001049,5.51e-23,52;UBERON:0005068,5.51e-23,52;UBERON:0006241,5.51e-23,52;UBERON:0007135,5.51e-23,52;UBERON:0010371,3.21e-22,73;UBERON:0000955,3.70e-20,47;UBERON:0006238,3.70e-20,47;UBERON:0003056,1.62e-19,49;UBERON:0002616,2.04e-19,46;UBERON:0010314,4.36e-19,92;UBERON:0003080,5.38e-17,40;UBERON:0002780,2.70e-16,39;UBERON:0001890,2.70e-16,39;UBERON:0006240,2.70e-16,39;UBERON:0002020,6.23e-16,34;UBERON:0003528,2.62e-13,29;UBERON:0002791,2.62e-13,29;UBERON:0001893,2.62e-13,29;UBERON:0000956,1.60e-08,21;UBERON:0001869,1.60e-08,21;UBERON:0000203,1.60e-08,21;UBERON:0002619,1.04e-07,17|phase1_expression=2.5623815536767,5.23463111459042,2.27499619694768,4.53696316960245,4.00716583957078,1.00727563147134,0,0.387369970324729,0,0.468129052643987,0,0,0,0.174840804837995,0,0.404950534779652,0.699561878128147,0.788655413395594,0.685572168028694,0,3.91199134694921,1.58865521921416,2.35079810225042,1.43993180514066,0.91763712426868,4.01962374880514,0.86152399231815,2.15471232685889,0.950117097281869,0.252030129759931,0.665191531965914,2.54012269383853,5.53558308826113,0,0.577703239502549,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.755380907853464,1.21652317463417,0.734187008646726,0,4.36050312760893,4.39372365468944,4.86074747685709,1.95980990275508,5.75010257459886,1.00669563634642,0,0.336093799142464,0.257259436035947,0,0,5.86717736492834,6.87688273053643,4.43681982454325,0.677689064138264,0,0.449949858640699,0,1.4209602298922,2.09720077362883,4.99483796918021,1.65903379693564,2.29510095163874,1.47227472945967,7.14127461009509,5.07997644188711,1.5923803897944,2.1086003624012,0.919218786610021,14.3150645299205,15.4501679083077,14.7462271925994,5.80299666012853,6.40413505216868,3.64639359389732,15.6342479440773,14.6318278608237,10.5430790965999,4.12480019663135,4.27115042397309,3.72798891650601,0.151452386666368,0.529000920747499,0.579728977403356,0,0,0,0.649776417447669,1.79210754838934,1.68533304158102,1.02258193546835,1.55871602761721,1.7666978725517,3.52108549441701,3.84979432242953,0,0,0,0.760079596425296,0.505524445014783,2.05530983494308,0.776813650941515,3.26572705942614,0.693941307064543,0.608930956624282,1.61430848079241,2.26083960828934,1.99900802130698,1.75933227861546,2.71914464507811,1.44599356919912,0.884610551949874,0.808834249737046,0.662524555381181,0.484875253135222,0,9.9545470983926,7.95897485891129,0.766371165625774,0.239630249011841,0.599902730993408,0.508280908292259,10.3355541189328,9.15001205637253,4.14659361972453,6.95297280769106,8.18289463457058,14.5451631191692,8.59878694259116,0.407357455401265,0.373220911830279,3.0326731012041,1.68353484709179,1.69156575851515,2.29902104433473,1.62055916824814,2.26057226753573,2.85753296435577,3.07472928683639,3.46696380870997,3.62184719034622,1.5089759505299,2.26927296201383,2.63926686245923,1.31517439456545,2.50242524303038,1.0447564995665,1.02891068203972,0.995171334092466,0,0.257347907114715,0,1.03562886267751,0.938104239924385,1.44049649168812,0.710234206755631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| ||
|EntrezGene=230903 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=A2A7H6,Q8BK26,A2A7H5,A2A7H4 | |||
|association_with_transcript=0bp_to_NM_001161852,NM_173401,uc008vug.2,uc008vuh.2,uc008vui.2,uc008vuj.2,uc012dpn.1_5end | |||
|description=CAGE_peak_2_at_Fbxo44_5end | |||
|id=chr4:147534140..147534181,- | |||
|ontology_enrichment_celltype=CL:0000117!3.42e-10!23;CL:0000337!3.42e-10!23;CL:0000221!7.18e-09!44;CL:0000133!7.18e-09!44;CL:0002319!1.60e-08!43;CL:0000540!4.39e-08!33;CL:0000047!4.39e-08!33;CL:0000031!4.39e-08!33;CL:0000404!4.39e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.39e-10,23;CL:0000337,1.39e-10,23;CL:0000221,4.17e-09,44;CL:0000133,4.17e-09,44;CL:0002319,9.82e-09,43;CL:0000540,8.98e-08,33;CL:0000047,8.98e-08,33;CL:0000031,8.98e-08,33;CL:0000404,8.98e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.32e-25!73;UBERON:0005743!3.32e-25!73;UBERON:0004121!3.35e-24!102;UBERON:0000924!3.35e-24!102;UBERON:0006601!3.35e-24!102;UBERON:0000073!2.04e-23!75;UBERON:0001016!2.04e-23!75;UBERON:0000033!5.19e-23!63;UBERON:0002346!1.18e-22!71;UBERON:0003075!1.18e-22!71;UBERON:0007284!1.18e-22!71;UBERON:0001049!3.36e-21!52;UBERON:0005068!3.36e-21!52;UBERON:0006241!3.36e-21!52;UBERON:0007135!3.36e-21!52;UBERON:0000955!9.08e-21!50;UBERON:0006238!9.08e-21!50;UBERON:0002616!4.51e-20!49;UBERON:0003056!2.27e-18!49;UBERON:0003080!4.57e-16!40;UBERON:0002780!2.02e-15!39;UBERON:0001890!2.02e-15!39;UBERON:0006240!2.02e-15!39;UBERON:0002020!4.17e-15!34;UBERON:0000153!5.10e-14!94;UBERON:0007811!1.36e-13!86;UBERON:0002791!1.08e-12!29;UBERON:0003528!1.08e-12!29;UBERON:0001893!1.08e-12!29;UBERON:0000956!2.83e-08!21;UBERON:0001869!2.83e-08!21;UBERON:0000203!2.83e-08!21;UBERON:0002619!1.52e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.66e-26,73;UBERON:0004121,4.33e-26,95;UBERON:0000924,4.33e-26,95;UBERON:0006601,4.33e-26,95;UBERON:0001016,7.96e-25,75;UBERON:0000073,1.24e-24,54;UBERON:0002346,5.25e-24,64;UBERON:0003075,5.25e-24,64;UBERON:0007284,5.25e-24,64;UBERON:0001049,5.51e-23,52;UBERON:0005068,5.51e-23,52;UBERON:0006241,5.51e-23,52;UBERON:0007135,5.51e-23,52;UBERON:0010371,3.21e-22,73;UBERON:0000955,3.70e-20,47;UBERON:0006238,3.70e-20,47;UBERON:0003056,1.62e-19,49;UBERON:0002616,2.04e-19,46;UBERON:0010314,4.36e-19,92;UBERON:0003080,5.38e-17,40;UBERON:0002780,2.70e-16,39;UBERON:0001890,2.70e-16,39;UBERON:0006240,2.70e-16,39;UBERON:0002020,6.23e-16,34;UBERON:0003528,2.62e-13,29;UBERON:0002791,2.62e-13,29;UBERON:0001893,2.62e-13,29;UBERON:0000956,1.60e-08,21;UBERON:0001869,1.60e-08,21;UBERON:0000203,1.60e-08,21;UBERON:0002619,1.04e-07,17 | |||
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| |||
|short_description=p2@Fbxo44 | |||
}} |
Revision as of 04:25, 14 September 2013
Short description: | p2@Fbxo44 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Fbxo44_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_001161852, NM_173401, uc008vug.2, uc008vuh.2, uc008vui.2, uc008vuj.2, uc012dpn.1_5end |
EntrezGene: | Fbxo44 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.39e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.39e-10 | 23 |
ectodermal cell | 4.17e-09 | 44 |
neurectodermal cell | 4.17e-09 | 44 |
neural cell | 9.82e-09 | 43 |
neuron | 8.98e-08 | 33 |
neuronal stem cell | 8.98e-08 | 33 |
neuroblast | 8.98e-08 | 33 |
electrically signaling cell | 8.98e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.66e-26 | 73 |
ectoderm-derived structure | 4.33e-26 | 95 |
ectoderm | 4.33e-26 | 95 |
presumptive ectoderm | 4.33e-26 | 95 |
nervous system | 7.96e-25 | 75 |
regional part of nervous system | 1.24e-24 | 54 |
neurectoderm | 5.25e-24 | 64 |
neural plate | 5.25e-24 | 64 |
presumptive neural plate | 5.25e-24 | 64 |
neural tube | 5.51e-23 | 52 |
neural rod | 5.51e-23 | 52 |
future spinal cord | 5.51e-23 | 52 |
neural keel | 5.51e-23 | 52 |
ecto-epithelium | 3.21e-22 | 73 |
brain | 3.70e-20 | 47 |
future brain | 3.70e-20 | 47 |
pre-chordal neural plate | 1.62e-19 | 49 |
regional part of brain | 2.04e-19 | 46 |
structure with developmental contribution from neural crest | 4.36e-19 | 92 |
anterior neural tube | 5.38e-17 | 40 |
regional part of forebrain | 2.70e-16 | 39 |
forebrain | 2.70e-16 | 39 |
future forebrain | 2.70e-16 | 39 |
gray matter | 6.23e-16 | 34 |
brain grey matter | 2.62e-13 | 29 |
regional part of telencephalon | 2.62e-13 | 29 |
telencephalon | 2.62e-13 | 29 |
cerebral cortex | 1.60e-08 | 21 |
cerebral hemisphere | 1.60e-08 | 21 |
pallium | 1.60e-08 | 21 |
regional part of cerebral cortex | 1.04e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.