FFCP PHASE1:Hg19::chr8:18942296..18942344,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23362|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19093|TSSclassifier=S|UniProt=E5RIH3|association_with_transcript=-56bp_to_ENST00000521475_5end|coexpression_cluster_id=C1542|description=CAGE_peak_6_at_PSD3_5end|id=chr8:18942296..18942344,-|ontology_enrichment_celltype=CL:0000055!1.24e-28!180;CL:0000057!3.15e-22!75;CL:0002620!1.19e-13!23;CL:0000048!1.17e-12!430;CL:0000723!1.44e-11!436;CL:0000034!1.95e-10!444;CL:0000680!2.99e-09!57;CL:0000056!2.99e-09!57;CL:0000355!2.99e-09!57;CL:0002320!1.13e-08!365;CL:0000187!8.75e-08!54;CL:0000183!1.66e-07!59;CL:0000134!2.97e-07!358;CL:0002371!4.00e-07!591|ontology_enrichment_celltype_v019=CL:0002620;1.05e-19;23!CL:0000057;2.44e-10;73!CL:0002320;2.51e-08;188!CL:0000499;9.79e-08;28!CL:0000680;2.35e-07;7!CL:0002556;2.56e-07;6!CL:0002552;8.66e-07;5!CL:0000134;9.10e-07;55|ontology_enrichment_celltype_v019_2=CL:0000057,1.30e-27,76;CL:0002620,3.75e-20,23;CL:0000048,8.22e-17,427;CL:0000723,5.41e-16,433;CL:0000034,6.05e-15,441;CL:0002320,2.63e-11,361;CL:0000134,8.91e-10,354;CL:0000680,1.94e-09,58;CL:0000056,1.94e-09,58;CL:0000355,1.94e-09,58;CL:0000219,5.34e-09,386;CL:0000499,9.02e-08,28;CL:0000187,1.43e-07,55;CL:0002556,2.89e-07,6;CL:0002552,8.54e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;7.20e-07;5!DOID:450;7.20e-07;5!DOID:66;7.20e-07;5!DOID:423;7.20e-07;5!DOID:0080000;7.20e-07;5!DOID:11722;7.20e-07;5|ontology_enrichment_disease_v019_2=DOID:17,6.61e-07,5;DOID:450,6.61e-07,5;DOID:66,6.61e-07,5;DOID:423,6.61e-07,5;DOID:0080000,6.61e-07,5;DOID:11722,6.61e-07,5|ontology_enrichment_uberon=UBERON:0000914!1.20e-14!83;UBERON:0002329!1.20e-14!83;UBERON:0003077!1.20e-14!83;UBERON:0003059!1.20e-14!83;UBERON:0007282!1.20e-14!83;UBERON:0009618!1.20e-14!83;UBERON:0007285!1.20e-14!83;UBERON:0004290!3.40e-11!70;UBERON:0005256!3.91e-11!143;UBERON:0000479!5.95e-10!787;UBERON:0002384!9.37e-10!375;UBERON:0000475!9.20e-09!365;UBERON:0002199!1.06e-08!45;UBERON:0002416!1.06e-08!45;UBERON:0002097!1.08e-08!40;UBERON:0002385!2.02e-08!63;UBERON:0001015!2.02e-08!63;UBERON:0000383!2.02e-08!63;UBERON:0000486!2.39e-08!82;UBERON:0003102!2.75e-08!95;UBERON:0001134!3.72e-08!61;UBERON:0002036!3.72e-08!61;UBERON:0003082!3.72e-08!61;UBERON:0000481!7.86e-08!347;UBERON:0000468!1.80e-07!659;UBERON:0000467!5.13e-07!625;UBERON:0000480!6.95e-07!626|ontology_enrichment_uberon_v019=UBERON:0002384;4.66e-10;198!UBERON:0002097;8.67e-10;41!UBERON:0002199;9.97e-09;46!UBERON:0002416;9.97e-09;46!UBERON:0001434;1.97e-08;36!UBERON:0000075;4.89e-08;16!UBERON:0003102;1.79e-07;50!UBERON:0001758;2.56e-07;6!UBERON:0003672;2.56e-07;6!UBERON:0002067;3.42e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.88e-14,46;UBERON:0002416,8.88e-14,46;UBERON:0002097,2.80e-13,41;UBERON:0002384,1.10e-12,371;UBERON:0007524,1.16e-12,73;UBERON:0002329,1.74e-12,71;UBERON:0003059,1.74e-12,71;UBERON:0007282,1.74e-12,71;UBERON:0004290,1.74e-12,71;UBERON:0009618,1.74e-12,71;UBERON:0003104,2.06e-12,160;UBERON:0009142,2.06e-12,160;UBERON:0003102,2.12e-12,99;UBERON:0003077,3.84e-12,72;UBERON:0007285,3.84e-12,72;UBERON:0007503,6.33e-11,78;UBERON:0000486,2.72e-10,83;UBERON:0005256,1.07e-08,122;UBERON:0002385,2.60e-08,64;UBERON:0001015,2.60e-08,64;UBERON:0000383,2.60e-08,64;UBERON:0001134,3.05e-08,62;UBERON:0002036,3.05e-08,62;UBERON:0003082,3.05e-08,62;UBERON:0000075,5.07e-08,16;UBERON:0002067,2.11e-07,9;UBERON:0004016,2.11e-07,9;UBERON:0010083,2.11e-07,9;UBERON:0001758,2.89e-07,6;UBERON:0003672,2.89e-07,6;UBERON:0002204,9.42e-07,167|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,1.26343974685366,0,0,0,0,0,7.67351388352289,7.29074226601415,0,0,0,0,0.738726348460727,1.22400414746552,0,0.286235987131057,0.273748850145768,0,0.0764134057479513,0,0,0,0,0.309632246632152,0,0,0,0.774672005803016,0.710846162437108,0,0,0.200544447470142,0,0.223915474239924,0.32389366601898,0,0.436194716338694,0.377875943688809,0.727752183563449,0,0,0,0,0.768482119587302,0,0.344745680736619,0,0,1.12945403725563,0.272906150057846,0.449446968890169,0.612167784741805,0.320929027076094,1.27867425159808,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0.605399502633369,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.02420515822182,0.511450247374121,5.06014813338393,5.51471701699479,2.02785126545153,13.5198610998687,15.0856809793817,0.283604451492204,0,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0.450445921933289,0,0,0.183201743930407,0,0,0,7.45457927542978,0.633152558322899,5.69359477496841,12.333974692199,1.77334191099179,1.12135520028461,0,0,2.8008993185979,0,1.14423332179421,2.57307626996383,1.15235184896,0.234321431833797,4.05808099879417,0,1.94283284717341,3.87533845524424,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23362 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19093 | |||
|TSSclassifier=S | |||
|UniProt=E5RIH3 | |||
|association_with_transcript=-56bp_to_ENST00000521475_5end | |||
|coexpression_cluster_id=C1542 | |||
|description=CAGE_peak_6_at_PSD3_5end | |||
|id=chr8:18942296..18942344,- | |||
|ontology_enrichment_celltype=CL:0000055!1.24e-28!180;CL:0000057!3.15e-22!75;CL:0002620!1.19e-13!23;CL:0000048!1.17e-12!430;CL:0000723!1.44e-11!436;CL:0000034!1.95e-10!444;CL:0000680!2.99e-09!57;CL:0000056!2.99e-09!57;CL:0000355!2.99e-09!57;CL:0002320!1.13e-08!365;CL:0000187!8.75e-08!54;CL:0000183!1.66e-07!59;CL:0000134!2.97e-07!358;CL:0002371!4.00e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.05e-19;23!CL:0000057;2.44e-10;73!CL:0002320;2.51e-08;188!CL:0000499;9.79e-08;28!CL:0000680;2.35e-07;7!CL:0002556;2.56e-07;6!CL:0002552;8.66e-07;5!CL:0000134;9.10e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.30e-27,76;CL:0002620,3.75e-20,23;CL:0000048,8.22e-17,427;CL:0000723,5.41e-16,433;CL:0000034,6.05e-15,441;CL:0002320,2.63e-11,361;CL:0000134,8.91e-10,354;CL:0000680,1.94e-09,58;CL:0000056,1.94e-09,58;CL:0000355,1.94e-09,58;CL:0000219,5.34e-09,386;CL:0000499,9.02e-08,28;CL:0000187,1.43e-07,55;CL:0002556,2.89e-07,6;CL:0002552,8.54e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.20e-07;5!DOID:450;7.20e-07;5!DOID:66;7.20e-07;5!DOID:423;7.20e-07;5!DOID:0080000;7.20e-07;5!DOID:11722;7.20e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.61e-07,5;DOID:450,6.61e-07,5;DOID:66,6.61e-07,5;DOID:423,6.61e-07,5;DOID:0080000,6.61e-07,5;DOID:11722,6.61e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.20e-14!83;UBERON:0002329!1.20e-14!83;UBERON:0003077!1.20e-14!83;UBERON:0003059!1.20e-14!83;UBERON:0007282!1.20e-14!83;UBERON:0009618!1.20e-14!83;UBERON:0007285!1.20e-14!83;UBERON:0004290!3.40e-11!70;UBERON:0005256!3.91e-11!143;UBERON:0000479!5.95e-10!787;UBERON:0002384!9.37e-10!375;UBERON:0000475!9.20e-09!365;UBERON:0002199!1.06e-08!45;UBERON:0002416!1.06e-08!45;UBERON:0002097!1.08e-08!40;UBERON:0002385!2.02e-08!63;UBERON:0001015!2.02e-08!63;UBERON:0000383!2.02e-08!63;UBERON:0000486!2.39e-08!82;UBERON:0003102!2.75e-08!95;UBERON:0001134!3.72e-08!61;UBERON:0002036!3.72e-08!61;UBERON:0003082!3.72e-08!61;UBERON:0000481!7.86e-08!347;UBERON:0000468!1.80e-07!659;UBERON:0000467!5.13e-07!625;UBERON:0000480!6.95e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.66e-10;198!UBERON:0002097;8.67e-10;41!UBERON:0002199;9.97e-09;46!UBERON:0002416;9.97e-09;46!UBERON:0001434;1.97e-08;36!UBERON:0000075;4.89e-08;16!UBERON:0003102;1.79e-07;50!UBERON:0001758;2.56e-07;6!UBERON:0003672;2.56e-07;6!UBERON:0002067;3.42e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.88e-14,46;UBERON:0002416,8.88e-14,46;UBERON:0002097,2.80e-13,41;UBERON:0002384,1.10e-12,371;UBERON:0007524,1.16e-12,73;UBERON:0002329,1.74e-12,71;UBERON:0003059,1.74e-12,71;UBERON:0007282,1.74e-12,71;UBERON:0004290,1.74e-12,71;UBERON:0009618,1.74e-12,71;UBERON:0003104,2.06e-12,160;UBERON:0009142,2.06e-12,160;UBERON:0003102,2.12e-12,99;UBERON:0003077,3.84e-12,72;UBERON:0007285,3.84e-12,72;UBERON:0007503,6.33e-11,78;UBERON:0000486,2.72e-10,83;UBERON:0005256,1.07e-08,122;UBERON:0002385,2.60e-08,64;UBERON:0001015,2.60e-08,64;UBERON:0000383,2.60e-08,64;UBERON:0001134,3.05e-08,62;UBERON:0002036,3.05e-08,62;UBERON:0003082,3.05e-08,62;UBERON:0000075,5.07e-08,16;UBERON:0002067,2.11e-07,9;UBERON:0004016,2.11e-07,9;UBERON:0010083,2.11e-07,9;UBERON:0001758,2.89e-07,6;UBERON:0003672,2.89e-07,6;UBERON:0002204,9.42e-07,167 | |||
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| |||
|short_description=p6@PSD3 | |||
}} |
Revision as of 04:26, 14 September 2013
Short description: | p6@PSD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PSD3_5end |
Coexpression cluster: | C1542_Fibroblast_ductal_liposarcoma_large_normal_mesenchymal_Myoblast |
Association with transcript: | -56bp_to_ENST00000521475_5end |
EntrezGene: | PSD3 |
HGNC: | 19093 |
UniProt: | E5RIH3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.30e-27 | 76 |
skin fibroblast | 3.75e-20 | 23 |
multi fate stem cell | 8.22e-17 | 427 |
somatic stem cell | 5.41e-16 | 433 |
stem cell | 6.05e-15 | 441 |
connective tissue cell | 2.63e-11 | 361 |
mesenchymal cell | 8.91e-10 | 354 |
muscle precursor cell | 1.94e-09 | 58 |
myoblast | 1.94e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.94e-09 | 58 |
motile cell | 5.34e-09 | 386 |
stromal cell | 9.02e-08 | 28 |
muscle cell | 1.43e-07 | 55 |
fibroblast of periodontium | 2.89e-07 | 6 |
fibroblast of gingiva | 8.54e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
integument | 8.88e-14 | 46 |
integumental system | 8.88e-14 | 46 |
skin of body | 2.80e-13 | 41 |
connective tissue | 1.10e-12 | 371 |
dense mesenchyme tissue | 1.16e-12 | 73 |
somite | 1.74e-12 | 71 |
presomitic mesoderm | 1.74e-12 | 71 |
presumptive segmental plate | 1.74e-12 | 71 |
dermomyotome | 1.74e-12 | 71 |
trunk paraxial mesoderm | 1.74e-12 | 71 |
mesenchyme | 2.06e-12 | 160 |
entire embryonic mesenchyme | 2.06e-12 | 160 |
surface structure | 2.12e-12 | 99 |
paraxial mesoderm | 3.84e-12 | 72 |
presumptive paraxial mesoderm | 3.84e-12 | 72 |
epithelial vesicle | 6.33e-11 | 78 |
multilaminar epithelium | 2.72e-10 | 83 |
trunk mesenchyme | 1.07e-08 | 122 |
muscle tissue | 2.60e-08 | 64 |
musculature | 2.60e-08 | 64 |
musculature of body | 2.60e-08 | 64 |
skeletal muscle tissue | 3.05e-08 | 62 |
striated muscle tissue | 3.05e-08 | 62 |
myotome | 3.05e-08 | 62 |
subdivision of skeletal system | 5.07e-08 | 16 |
dermis | 2.11e-07 | 9 |
dermatome | 2.11e-07 | 9 |
future dermis | 2.11e-07 | 9 |
periodontium | 2.89e-07 | 6 |
dentition | 2.89e-07 | 6 |
musculoskeletal system | 9.42e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.61e-07 | 5 |
myotonic disease | 6.61e-07 | 5 |
muscle tissue disease | 6.61e-07 | 5 |
myopathy | 6.61e-07 | 5 |
muscular disease | 6.61e-07 | 5 |
myotonic dystrophy | 6.61e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.