FFCP PHASE1:Mm9::chr4:44025529..44025532,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12757|HGNC=|UniProt=Q6PFA2,B1AWD9,B1AWE0,B1AWD8|association_with_transcript=14bp_to_ENSMUST00000170241,NM_001080384,NM_001080385,NM_001080386,NM_016760,uc008srl.1_5end|description=CAGE_peak_2_at_Clta_5end|id=chr4:44025529..44025532,+|ontology_enrichment_celltype=CL:0000055!2.63e-11!50;CL:0000117!5.13e-11!23;CL:0000337!5.13e-11!23;CL:0000221!8.35e-11!44;CL:0000133!8.35e-11!44;CL:0000393!1.03e-10!39;CL:0000211!1.03e-10!39;CL:0002319!1.41e-10!43;CL:0000540!5.79e-10!33;CL:0000047!5.79e-10!33;CL:0000031!5.79e-10!33;CL:0000404!5.79e-10!33|ontology_enrichment_celltype_v019_2=CL:0000117,5.13e-11,23;CL:0000337,5.13e-11,23;CL:0000221,8.35e-11,44;CL:0000133,8.35e-11,44;CL:0000393,1.03e-10,39;CL:0000211,1.03e-10,39;CL:0002319,1.41e-10,43;CL:0000540,5.79e-10,33;CL:0000047,5.79e-10,33;CL:0000031,5.79e-10,33;CL:0000404,5.79e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.72e-20!75;UBERON:0001016!1.72e-20!75;UBERON:0001017!4.10e-20!73;UBERON:0005743!4.10e-20!73;UBERON:0002346!1.78e-18!71;UBERON:0003075!1.78e-18!71;UBERON:0007284!1.78e-18!71;UBERON:0001049!1.35e-17!52;UBERON:0005068!1.35e-17!52;UBERON:0006241!1.35e-17!52;UBERON:0007135!1.35e-17!52;UBERON:0004121!2.33e-17!102;UBERON:0000924!2.33e-17!102;UBERON:0006601!2.33e-17!102;UBERON:0000955!4.49e-16!50;UBERON:0006238!4.49e-16!50;UBERON:0002616!1.12e-15!49;UBERON:0000033!1.09e-14!63;UBERON:0002020!1.37e-13!34;UBERON:0003080!1.19e-12!40;UBERON:0003056!1.98e-12!49;UBERON:0002780!4.36e-12!39;UBERON:0001890!4.36e-12!39;UBERON:0006240!4.36e-12!39;UBERON:0002791!3.96e-11!29;UBERON:0003528!3.96e-11!29;UBERON:0001893!3.96e-11!29;UBERON:0000956!2.15e-07!21;UBERON:0001869!2.15e-07!21;UBERON:0000203!2.15e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.72e-20,75;UBERON:0001017,4.10e-20,73;UBERON:0000073,2.89e-18,54;UBERON:0001049,1.35e-17,52;UBERON:0005068,1.35e-17,52;UBERON:0006241,1.35e-17,52;UBERON:0007135,1.35e-17,52;UBERON:0002346,2.69e-17,64;UBERON:0003075,2.69e-17,64;UBERON:0007284,2.69e-17,64;UBERON:0004121,5.74e-16,95;UBERON:0000924,5.74e-16,95;UBERON:0006601,5.74e-16,95;UBERON:0000955,6.03e-15,47;UBERON:0006238,6.03e-15,47;UBERON:0010371,1.12e-14,73;UBERON:0002616,1.48e-14,46;UBERON:0002020,1.37e-13,34;UBERON:0003080,1.19e-12,40;UBERON:0003056,1.98e-12,49;UBERON:0002780,4.36e-12,39;UBERON:0001890,4.36e-12,39;UBERON:0006240,4.36e-12,39;UBERON:0010314,1.96e-11,92;UBERON:0003528,3.96e-11,29;UBERON:0002791,3.96e-11,29;UBERON:0001893,3.96e-11,29;UBERON:0000956,2.15e-07,21;UBERON:0001869,2.15e-07,21;UBERON:0000203,2.15e-07,21|phase1_expression=13.2923543096979,8.37540978334467,8.64498554840118,6.95667686005709,14.0250804384977,5.54001597309236,6.30754129607919,4.64843964389675,1.83025338797167,2.10658073689794,4.96532107853964,3.03134204182278,5.64962408772979,4.98296293788285,6.32908547449759,4.04950534779652,2.79824751251259,9.62159604342625,8.36398044995006,10.1853516431527,7.39876624314307,7.84398514486994,5.74639536105658,6.39969691173627,5.04700418347774,12.0588712464154,6.8921919385452,10.1271479362368,7.79096019771133,10.5852654499171,10.199603490144,2.54012269383853,2.46025915033828,0,6.06588401477677,8.97667084935859,6.32925004413344,19.2524550138978,31.253413780952,18.8468547830567,16.4704816648684,23.2235464885872,22.8189865924642,10.4494358919729,11.6583470902442,10.6457116253775,20.342174953049,8.93903141159831,12.0827400503959,6.22175677037707,7.27929392451885,7.18762821824858,7.21465206048266,4.35217285206807,2.01656279485478,9.00408026125814,11.1748041576115,9.28209766099396,15.578367486189,20.1016572123373,8.87363964908651,17.6199156675949,9.78224275722253,20.6976934974722,24.7216590641744,20.6039233334369,17.0772062995491,16.5213871288268,10.1615820062308,11.2054928815303,11.7781978356774,15.7108041422092,17.2277461942259,15.0663683034393,16.1978846020819,17.4651569455904,11.0115880999389,13.1517958227743,12.9029487935245,19.9148294472593,18.9379422256988,19.2737947106001,15.0758819460746,12.9435400307286,14.8214300343506,12.9636577608414,13.3829379951157,14.3527573285481,10.7531194533121,9.97544593409569,8.11620568364698,8.60423876981386,6.11974200336975,4.31762553310254,5.84798775702902,4.92829575807069,6.60088774619234,9.88495870952735,12.4697282209377,8.12681021373782,10.8449433228044,7.69958864485907,5.09610479413291,0,4.97929394325792,6.58735650235256,5.05524445014783,6.16592950482924,7.25026074212081,9.05497048295431,12.1439728736295,10.6562917409249,9.68585088475446,11.9070886036572,8.34879820663504,11.4356598110005,7.91023896749996,4.04878199375753,1.76922110389975,6.95597454773859,4.41683036920787,5.33362778448744,3.72783522436244,9.66176630138106,11.3101221679266,6.89734049063197,9.10594946244994,11.3981518888747,8.25956475974921,17.0761328921498,10.0650132620098,16.2094114225595,12.6891753740362,18.1557974704535,13.5062228963714,12.8170597823529,9.57290020192973,7.2156042953854,9.35074206204597,5.05060454127538,11.3204785377552,12.644615743841,7.02242306240862,10.0972227949929,8.91278138882395,9.99287018221828,10.7756983243688,10.6068382002996,10.7783996466421,7.75334928688059,8.09375171154165,8.11024209982027,8.06337022754234,7.3132954969655,5.96768195583036,9.55364480728767,4.21327912387941,7.20574139921202,8.80906848126337,6.00664740352955,8.20841209933837,6.30217215113552,4.97163944728941,6.49321964766433,6.32495162838251,7.44108623201305,8.04820204198858,5.83826711835847,6.7469538464527,6.7308660272429,5.10733500138891,5.11699955988663,5.92785311285837,6.30770168173747,10.9350773253346,14.2008365083413,8.26046957459495,6.34681359992506,10.2378360256912,7.89604684325491,7.34544529535932,8.0673409849337,8.2279876222602,9.3210556795154,5.69434873853414,12.1877226495768,10.0534083520108,11.7384318504279,11.8928093142663,8.98819408654222,6.91641759599022,6.77080329064848,11.9490777600441,9.36837803399776,4.50830942692322,6.92414514674068,9.50367187121366,9.67874314486396,9.42224403151434,7.82333784291891,9.89091985400661,9.37818445805684,6.81841042300442,6.67380422864376,5.50365186316968,5.39669069723649,6.49152388443209,4.10001171579109,9.16653066413111,5.75392274901621,7.7824908852017,8.51140380883053,14.3768206527355,9.67566463938109,6.86482880852033,9.85057623993736,10.225652570749,5.30687873499704,7.39012760666419,9.85355341206521,7.82231886921724,9.50572480341054,10.0916806764056,8.37531287209079,8.56957107189649,7.80534591431195,9.30047350226527,9.30151696524855,11.6401981119966,11.7981586595331,9.15230403889247,7.95569822198314,16.5870412333199,11.9659250440116,6.39293554924747,10.2096596132751,15.412856638828,17.8161763620149,7.54100748732707,4.03953483526997,8.51872192423893,10.1514073517126,9.26320610251035,7.40803273652911,8.68914828921337,10.190755108398,10.1202675418724,9.35218745316198,7.51046778098395,12.2102100240287,5.25178315270594,15.313641915384,7.65568708961808,5.93892442701128,7.96470830039777,14.8096188054539,8.76738315197778,7.92141334974772,10.6308681437078,8.30074899448604,9.56184684722418,8.36127577798263,5.34746067577082,6.95280867458795,6.32511651449993,6.18813259489121,7.48967132658334,7.74262704334634,13.3239444296237,10.502514716548,8.86701168211368,9.98865378571595,11.6829804627506,11.2652031172402,8.21350978222986,9.95610733059955,11.0264199027481,5.11147384118588,5.9741837877485,6.03129249281559,7.63983001620073,6.56563598980245,5.53813589596716,13.7214723487777,7.86006051670122,11.3512777379772,7.59297562215818,7.91147519419702,6.42462870288818,9.60868327467395,6.96911562974807,6.71766971153558,8.29199842826543,9.54670618015114,9.17374381385292,6.30290348093231,9.07244862903131,7.10900206449194,10.2630404960703,10.2496903252464,8.43065248398426,10.9937495633292,6.35113369129785,3.10669656543463,5.07323644815771,9.8680920389026,14.8912641411388,8.36140109879405,9.94530640778529,10.9821481569006,10.0927225235348,5.59878854828985,5.34782656571125,3.14059357073808,3.74439008135225,3.79213344753814,11.3526120562492,10.4765176308124,7.7952493786677,3.04345382634718,4.17230845040656,6.49055427407832,5.46451250545936,6.05798699688886,5.56309688581499,3.83139503519994,5.55509920216589,5.38786313185845,6.07759891344159,3.85441652145859,11.9872414821995,13.2776507782024,10.744615447301,5.60249822693352,7.50729901804728,8.79127796482872,6.85978813053011,5.01572104035363,12.9892923801925,8.28585425712918,10.8850147553485,17.0134650520251,13.7016503954128,10.5755145634558,16.2005400055633,13.0593148935024,15.406841905463,16.0505696643064,12.5582690576854,3.99024873401031,10.4147499510022,5.59145449257076,11.947950269795,11.3982975239009,6.88964856185007,6.59312183164461,5.45562656306086,8.08631077644152,5.32306529769503,8.48818536237343,7.49132059759059,6.33849008808206,8.61532034334199,3.81034953026459,6.37363792696705,7.13764115715709,8.24171801606613,6.32955356577908,7.54312355247914,7.45398385869217,7.39152188836695,6.1045494985578,7.81107857447244,8.88453382862603,7.86590283352922,5.26139422875686,7.74083448921412,7.85599180320834,8.06718123244384,8.86540341380071,3.27384834535751,7.43696837692637,9.45242393807593,10.2422336954558,5.84829021113521,7.95022899978704,6.50380329034067,5.95596831622692,9.04284558919644|short_description=p2@Clta}} | ||
|EntrezGene=12757 | |||
|HGNC= | |||
|UniProt=Q6PFA2,B1AWD9,B1AWE0,B1AWD8 | |||
|association_with_transcript=14bp_to_ENSMUST00000170241,NM_001080384,NM_001080385,NM_001080386,NM_016760,uc008srl.1_5end | |||
|description=CAGE_peak_2_at_Clta_5end | |||
|id=chr4:44025529..44025532,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.63e-11!50;CL:0000117!5.13e-11!23;CL:0000337!5.13e-11!23;CL:0000221!8.35e-11!44;CL:0000133!8.35e-11!44;CL:0000393!1.03e-10!39;CL:0000211!1.03e-10!39;CL:0002319!1.41e-10!43;CL:0000540!5.79e-10!33;CL:0000047!5.79e-10!33;CL:0000031!5.79e-10!33;CL:0000404!5.79e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.13e-11,23;CL:0000337,5.13e-11,23;CL:0000221,8.35e-11,44;CL:0000133,8.35e-11,44;CL:0000393,1.03e-10,39;CL:0000211,1.03e-10,39;CL:0002319,1.41e-10,43;CL:0000540,5.79e-10,33;CL:0000047,5.79e-10,33;CL:0000031,5.79e-10,33;CL:0000404,5.79e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.72e-20!75;UBERON:0001016!1.72e-20!75;UBERON:0001017!4.10e-20!73;UBERON:0005743!4.10e-20!73;UBERON:0002346!1.78e-18!71;UBERON:0003075!1.78e-18!71;UBERON:0007284!1.78e-18!71;UBERON:0001049!1.35e-17!52;UBERON:0005068!1.35e-17!52;UBERON:0006241!1.35e-17!52;UBERON:0007135!1.35e-17!52;UBERON:0004121!2.33e-17!102;UBERON:0000924!2.33e-17!102;UBERON:0006601!2.33e-17!102;UBERON:0000955!4.49e-16!50;UBERON:0006238!4.49e-16!50;UBERON:0002616!1.12e-15!49;UBERON:0000033!1.09e-14!63;UBERON:0002020!1.37e-13!34;UBERON:0003080!1.19e-12!40;UBERON:0003056!1.98e-12!49;UBERON:0002780!4.36e-12!39;UBERON:0001890!4.36e-12!39;UBERON:0006240!4.36e-12!39;UBERON:0002791!3.96e-11!29;UBERON:0003528!3.96e-11!29;UBERON:0001893!3.96e-11!29;UBERON:0000956!2.15e-07!21;UBERON:0001869!2.15e-07!21;UBERON:0000203!2.15e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.72e-20,75;UBERON:0001017,4.10e-20,73;UBERON:0000073,2.89e-18,54;UBERON:0001049,1.35e-17,52;UBERON:0005068,1.35e-17,52;UBERON:0006241,1.35e-17,52;UBERON:0007135,1.35e-17,52;UBERON:0002346,2.69e-17,64;UBERON:0003075,2.69e-17,64;UBERON:0007284,2.69e-17,64;UBERON:0004121,5.74e-16,95;UBERON:0000924,5.74e-16,95;UBERON:0006601,5.74e-16,95;UBERON:0000955,6.03e-15,47;UBERON:0006238,6.03e-15,47;UBERON:0010371,1.12e-14,73;UBERON:0002616,1.48e-14,46;UBERON:0002020,1.37e-13,34;UBERON:0003080,1.19e-12,40;UBERON:0003056,1.98e-12,49;UBERON:0002780,4.36e-12,39;UBERON:0001890,4.36e-12,39;UBERON:0006240,4.36e-12,39;UBERON:0010314,1.96e-11,92;UBERON:0003528,3.96e-11,29;UBERON:0002791,3.96e-11,29;UBERON:0001893,3.96e-11,29;UBERON:0000956,2.15e-07,21;UBERON:0001869,2.15e-07,21;UBERON:0000203,2.15e-07,21 | |||
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| |||
|short_description=p2@Clta | |||
}} |
Revision as of 05:02, 14 September 2013
Short description: | p2@Clta |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Clta_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_ENSMUST00000170241, NM_001080384, NM_001080385, NM_001080386, NM_016760, uc008srl.1_5end |
EntrezGene: | Clta |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.13e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.13e-11 | 23 |
ectodermal cell | 8.35e-11 | 44 |
neurectodermal cell | 8.35e-11 | 44 |
electrically responsive cell | 1.03e-10 | 39 |
electrically active cell | 1.03e-10 | 39 |
neural cell | 1.41e-10 | 43 |
neuron | 5.79e-10 | 33 |
neuronal stem cell | 5.79e-10 | 33 |
neuroblast | 5.79e-10 | 33 |
electrically signaling cell | 5.79e-10 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.72e-20 | 75 |
central nervous system | 4.10e-20 | 73 |
regional part of nervous system | 2.89e-18 | 54 |
neural tube | 1.35e-17 | 52 |
neural rod | 1.35e-17 | 52 |
future spinal cord | 1.35e-17 | 52 |
neural keel | 1.35e-17 | 52 |
neurectoderm | 2.69e-17 | 64 |
neural plate | 2.69e-17 | 64 |
presumptive neural plate | 2.69e-17 | 64 |
ectoderm-derived structure | 5.74e-16 | 95 |
ectoderm | 5.74e-16 | 95 |
presumptive ectoderm | 5.74e-16 | 95 |
brain | 6.03e-15 | 47 |
future brain | 6.03e-15 | 47 |
ecto-epithelium | 1.12e-14 | 73 |
regional part of brain | 1.48e-14 | 46 |
gray matter | 1.37e-13 | 34 |
anterior neural tube | 1.19e-12 | 40 |
pre-chordal neural plate | 1.98e-12 | 49 |
regional part of forebrain | 4.36e-12 | 39 |
forebrain | 4.36e-12 | 39 |
future forebrain | 4.36e-12 | 39 |
structure with developmental contribution from neural crest | 1.96e-11 | 92 |
brain grey matter | 3.96e-11 | 29 |
regional part of telencephalon | 3.96e-11 | 29 |
telencephalon | 3.96e-11 | 29 |
cerebral cortex | 2.15e-07 | 21 |
cerebral hemisphere | 2.15e-07 | 21 |
pallium | 2.15e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.