FFCP PHASE1:Mm9::chr4:63064364..63064384,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100182|HGNC=|MCL_coexpression_id=36|UniProt=Q80VW7|association_with_transcript=3bp_to_ENSMUST00000035724_5end|description=CAGE_peak_1_at_Akna_5end|id=chr4:63064364..63064384,-|ontology_enrichment_celltype=CL:0000988!1.87e-09!32;CL:0002032!1.87e-09!32;CL:0000037!1.87e-09!32;CL:0000566!1.87e-09!32;CL:0000837!1.87e-09!32;CL:0000738!6.27e-09!17;CL:0002087!6.27e-09!17;CL:0000838!2.43e-08!12;CL:0002031!2.53e-08!25;CL:0000542!3.11e-08!13;CL:0000051!3.11e-08!13;CL:0000084!9.05e-08!11;CL:0000827!9.05e-08!11;CL:0000791!9.00e-07!9;CL:0000789!9.00e-07!9;CL:0002420!9.00e-07!9;CL:0002419!9.00e-07!9;CL:0000790!9.00e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,2.58e-10,32;CL:0002032,2.58e-10,32;CL:0000037,2.58e-10,32;CL:0000837,2.58e-10,32;CL:0000738,3.38e-09,17;CL:0002087,3.38e-09,17;CL:0002031,3.62e-09,25;CL:0000838,1.38e-08,12;CL:0000542,1.78e-08,13;CL:0000051,1.78e-08,13;CL:0000084,5.38e-08,11;CL:0000827,5.38e-08,11;CL:0000791,5.80e-07,9;CL:0000789,5.80e-07,9;CL:0002420,5.80e-07,9;CL:0002419,5.80e-07,9;CL:0000790,5.80e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.46e-17!48;UBERON:0002390!2.17e-16!45;UBERON:0003061!2.17e-16!45;UBERON:0002405!7.78e-16!70;UBERON:0004177!5.22e-11!29;UBERON:0005057!2.21e-09!51;UBERON:0003081!8.81e-09!88;UBERON:0003408!1.80e-08!24;UBERON:0002370!3.63e-08!23;UBERON:0000974!3.63e-08!23;UBERON:0004807!3.63e-08!23;UBERON:0005058!3.63e-08!23;UBERON:0003351!3.63e-08!23;UBERON:0009113!3.63e-08!23;UBERON:0003295!3.63e-08!23;UBERON:0009722!3.63e-08!23;UBERON:0005562!3.63e-08!23;UBERON:0007690!3.63e-08!23;UBERON:0000926!4.48e-08!193;UBERON:0004120!4.48e-08!193;UBERON:0006603!4.48e-08!193;UBERON:0001041!9.81e-08!92;UBERON:0006562!1.42e-07!24;UBERON:0001557!1.42e-07!24;UBERON:0001042!1.42e-07!24;UBERON:0008814!1.42e-07!24;UBERON:0009145!1.42e-07!24;UBERON:0000077!2.34e-07!97;UBERON:0001004!2.37e-07!42;UBERON:0000065!4.56e-07!41;UBERON:0003104!7.92e-07!131;UBERON:0009142!7.92e-07!131|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.08e-19,48;UBERON:0002405,8.08e-19,48;UBERON:0002390,1.35e-17,45;UBERON:0003061,1.35e-17,45;UBERON:0004177,5.25e-12,29;UBERON:0005057,5.25e-12,29;UBERON:0000077,3.72e-10,35;UBERON:0001041,5.00e-10,80;UBERON:0003408,2.45e-09,24;UBERON:0002370,5.06e-09,23;UBERON:0000974,5.06e-09,23;UBERON:0004807,5.06e-09,23;UBERON:0005058,5.06e-09,23;UBERON:0003351,5.06e-09,23;UBERON:0009113,5.06e-09,23;UBERON:0003295,5.06e-09,23;UBERON:0009722,5.06e-09,23;UBERON:0005562,5.06e-09,23;UBERON:0007690,5.06e-09,23;UBERON:0001004,2.90e-08,42;UBERON:0006562,3.97e-08,24;UBERON:0001557,3.97e-08,24;UBERON:0001042,3.97e-08,24;UBERON:0008814,3.97e-08,24;UBERON:0009145,3.97e-08,24;UBERON:0003081,4.79e-08,87;UBERON:0000065,5.84e-08,41;UBERON:0002530,2.83e-07,65;UBERON:0002368,5.66e-07,60;UBERON:0001007,6.68e-07,116;UBERON:0001555,6.68e-07,116;UBERON:0007026,6.68e-07,116|phase1_expression=0.160148847104794,0.348975407639361,0,0,0,0,0,124.345760474238,89.6824160106117,114.457553371455,12.8413476169129,18.4273687279227,111.622875915146,133.316113688971,18.6541466616771,14.9831697868471,6.99561878128147,63.5656263196849,80.8975158273859,69.1755132430789,3.48677489619386,32.865304847493,22.7243816550874,5.91971964335605,4.81759490241057,0,0.430761996159075,0,0.950117097281869,3.78045194639896,1.10865255327652,0,0,0,0,0,0,179.550069586133,90.6348999647608,120.410461113974,168.23420557687,174.859644149362,156.819844029063,0.503587271902309,0.304130793658544,0.917733760808408,0,0,0,0.194429899074283,0,0,44.2946079992424,93.5717163194634,80.6625117941914,0.771778308107841,0.573066879877513,0.515672092277442,0.202316460859598,0.528990979272033,1.26766280701236,0.677689064138264,0,10.7987966073768,4.94433181283487,13.4991221839759,4.19440154725767,2.68952813725088,1.14058573539325,0.540023753326763,1.05162480675691,0,0.662605622854841,3.30725157880376,3.92966431174769,2.75765635983006,0,0.510749352340751,0.46081959976873,1.18697658957174,0.365950574409639,0.52091337055676,0.558365998002762,1.12552522006336,0.916789486660861,0.294628585473668,0.854230084794618,0.372798891650601,1.13589289999776,0.0755715601067855,2.89864488701678,0,0,0,1.29955283489534,0,8.14577636764161,0.681721290312231,0.259786004602869,0,0.14084341977668,0,0,0,0,0,0,6.05174562511018,70.948980119325,6.08612770165782,1.90833859442749,0.608930956624282,0.922461989024234,1.3565037649736,1.29347577849275,1.63366568728578,0.247194967734374,5.78397427679647,49.538190909193,5.50007289821191,25.3967746229453,15.5160081003271,5.59175283654366,0.585561594023094,0.83778682725382,11.4955674843866,9.22576458695586,2.99951365496704,9.91147771169905,0.898743836428936,3.20250421973039,1.13088916901578,0.869121600961382,2.04572365864264,0.83115217823824,1.46017136760982,1.2220723662038,19.0342665033442,1.26361379216837,2.31486041475121,2.08192708740326,0,1.26043490863744,0.90422890701429,0.680364991513279,0.896796041993948,0.749613796477831,2.84573707812917,3.8802238727911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| ||
|EntrezGene=100182 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=Q80VW7 | |||
|association_with_transcript=3bp_to_ENSMUST00000035724_5end | |||
|description=CAGE_peak_1_at_Akna_5end | |||
|id=chr4:63064364..63064384,- | |||
|ontology_enrichment_celltype=CL:0000988!1.87e-09!32;CL:0002032!1.87e-09!32;CL:0000037!1.87e-09!32;CL:0000566!1.87e-09!32;CL:0000837!1.87e-09!32;CL:0000738!6.27e-09!17;CL:0002087!6.27e-09!17;CL:0000838!2.43e-08!12;CL:0002031!2.53e-08!25;CL:0000542!3.11e-08!13;CL:0000051!3.11e-08!13;CL:0000084!9.05e-08!11;CL:0000827!9.05e-08!11;CL:0000791!9.00e-07!9;CL:0000789!9.00e-07!9;CL:0002420!9.00e-07!9;CL:0002419!9.00e-07!9;CL:0000790!9.00e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.58e-10,32;CL:0002032,2.58e-10,32;CL:0000037,2.58e-10,32;CL:0000837,2.58e-10,32;CL:0000738,3.38e-09,17;CL:0002087,3.38e-09,17;CL:0002031,3.62e-09,25;CL:0000838,1.38e-08,12;CL:0000542,1.78e-08,13;CL:0000051,1.78e-08,13;CL:0000084,5.38e-08,11;CL:0000827,5.38e-08,11;CL:0000791,5.80e-07,9;CL:0000789,5.80e-07,9;CL:0002420,5.80e-07,9;CL:0002419,5.80e-07,9;CL:0000790,5.80e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.46e-17!48;UBERON:0002390!2.17e-16!45;UBERON:0003061!2.17e-16!45;UBERON:0002405!7.78e-16!70;UBERON:0004177!5.22e-11!29;UBERON:0005057!2.21e-09!51;UBERON:0003081!8.81e-09!88;UBERON:0003408!1.80e-08!24;UBERON:0002370!3.63e-08!23;UBERON:0000974!3.63e-08!23;UBERON:0004807!3.63e-08!23;UBERON:0005058!3.63e-08!23;UBERON:0003351!3.63e-08!23;UBERON:0009113!3.63e-08!23;UBERON:0003295!3.63e-08!23;UBERON:0009722!3.63e-08!23;UBERON:0005562!3.63e-08!23;UBERON:0007690!3.63e-08!23;UBERON:0000926!4.48e-08!193;UBERON:0004120!4.48e-08!193;UBERON:0006603!4.48e-08!193;UBERON:0001041!9.81e-08!92;UBERON:0006562!1.42e-07!24;UBERON:0001557!1.42e-07!24;UBERON:0001042!1.42e-07!24;UBERON:0008814!1.42e-07!24;UBERON:0009145!1.42e-07!24;UBERON:0000077!2.34e-07!97;UBERON:0001004!2.37e-07!42;UBERON:0000065!4.56e-07!41;UBERON:0003104!7.92e-07!131;UBERON:0009142!7.92e-07!131 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.08e-19,48;UBERON:0002405,8.08e-19,48;UBERON:0002390,1.35e-17,45;UBERON:0003061,1.35e-17,45;UBERON:0004177,5.25e-12,29;UBERON:0005057,5.25e-12,29;UBERON:0000077,3.72e-10,35;UBERON:0001041,5.00e-10,80;UBERON:0003408,2.45e-09,24;UBERON:0002370,5.06e-09,23;UBERON:0000974,5.06e-09,23;UBERON:0004807,5.06e-09,23;UBERON:0005058,5.06e-09,23;UBERON:0003351,5.06e-09,23;UBERON:0009113,5.06e-09,23;UBERON:0003295,5.06e-09,23;UBERON:0009722,5.06e-09,23;UBERON:0005562,5.06e-09,23;UBERON:0007690,5.06e-09,23;UBERON:0001004,2.90e-08,42;UBERON:0006562,3.97e-08,24;UBERON:0001557,3.97e-08,24;UBERON:0001042,3.97e-08,24;UBERON:0008814,3.97e-08,24;UBERON:0009145,3.97e-08,24;UBERON:0003081,4.79e-08,87;UBERON:0000065,5.84e-08,41;UBERON:0002530,2.83e-07,65;UBERON:0002368,5.66e-07,60;UBERON:0001007,6.68e-07,116;UBERON:0001555,6.68e-07,116;UBERON:0007026,6.68e-07,116 | |||
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| |||
|short_description=p1@Akna | |||
}} |
Revision as of 05:22, 14 September 2013
Short description: | p1@Akna |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Akna_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 3bp_to_ENSMUST00000035724_5end |
EntrezGene: | Akna |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.58e-10 | 32 |
hematopoietic oligopotent progenitor cell | 2.58e-10 | 32 |
hematopoietic stem cell | 2.58e-10 | 32 |
hematopoietic multipotent progenitor cell | 2.58e-10 | 32 |
leukocyte | 3.38e-09 | 17 |
nongranular leukocyte | 3.38e-09 | 17 |
hematopoietic lineage restricted progenitor cell | 3.62e-09 | 25 |
lymphoid lineage restricted progenitor cell | 1.38e-08 | 12 |
lymphocyte | 1.78e-08 | 13 |
common lymphoid progenitor | 1.78e-08 | 13 |
T cell | 5.38e-08 | 11 |
pro-T cell | 5.38e-08 | 11 |
mature alpha-beta T cell | 5.80e-07 | 9 |
alpha-beta T cell | 5.80e-07 | 9 |
immature T cell | 5.80e-07 | 9 |
mature T cell | 5.80e-07 | 9 |
immature alpha-beta T cell | 5.80e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.08e-19 | 48 |
immune system | 8.08e-19 | 48 |
hematopoietic system | 1.35e-17 | 45 |
blood island | 1.35e-17 | 45 |
hemopoietic organ | 5.25e-12 | 29 |
immune organ | 5.25e-12 | 29 |
mixed endoderm/mesoderm-derived structure | 3.72e-10 | 35 |
foregut | 5.00e-10 | 80 |
gland of gut | 2.45e-09 | 24 |
thymus | 5.06e-09 | 23 |
neck | 5.06e-09 | 23 |
respiratory system epithelium | 5.06e-09 | 23 |
hemolymphoid system gland | 5.06e-09 | 23 |
pharyngeal epithelium | 5.06e-09 | 23 |
thymic region | 5.06e-09 | 23 |
pharyngeal gland | 5.06e-09 | 23 |
entire pharyngeal arch endoderm | 5.06e-09 | 23 |
thymus primordium | 5.06e-09 | 23 |
early pharyngeal endoderm | 5.06e-09 | 23 |
respiratory system | 2.90e-08 | 42 |
pharynx | 3.97e-08 | 24 |
upper respiratory tract | 3.97e-08 | 24 |
chordate pharynx | 3.97e-08 | 24 |
pharyngeal arch system | 3.97e-08 | 24 |
pharyngeal region of foregut | 3.97e-08 | 24 |
lateral plate mesoderm | 4.79e-08 | 87 |
respiratory tract | 5.84e-08 | 41 |
gland | 2.83e-07 | 65 |
endocrine gland | 5.66e-07 | 60 |
digestive system | 6.68e-07 | 116 |
digestive tract | 6.68e-07 | 116 |
primitive gut | 6.68e-07 | 116 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.