FFCP PHASE1:Hg19::chr9:124990680..124990719,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26468|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21735|TSSclassifier=S|UniProt=Q9UPM6|association_with_transcript=0bp_to_ENST00000541397,ENST00000560485,NM_001242333_5end|coexpression_cluster_id=C10|description=CAGE_peak_8_at_LHX6_5end|id=chr9:124990680..124990719,-|ontology_enrichment_celltype=CL:0000047!1.39e-08!8;CL:0000540!8.13e-07!6;CL:0000031!8.13e-07!6;CL:0000404!8.13e-07!6;CL:0005020!8.45e-07!6;CL:0002138!8.45e-07!6;CL:0005022!8.45e-07!6|ontology_enrichment_celltype_v019=CL:0000540;7.11e-13;6!CL:0000404;7.11e-13;6!CL:0002138;8.27e-13;6!CL:0000047;2.60e-10;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.02e-20,8;CL:0000540,6.90e-13,6;CL:0000031,6.90e-13,6;CL:0000404,6.90e-13,6;CL:0005020,8.27e-13,6;CL:0002138,8.27e-13,6;CL:0005022,8.27e-13,6|ontology_enrichment_development_v019=CL:0000031;7.11e-13;6!CL:0005022;8.27e-13;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!2.30e-28!86;UBERON:0001017!9.04e-28!82;UBERON:0000073!4.36e-25!94;UBERON:0001016!4.36e-25!94;UBERON:0001893!5.29e-25!34;UBERON:0001869!1.68e-23!32;UBERON:0002780!6.51e-23!41;UBERON:0001890!6.51e-23!41;UBERON:0006240!6.51e-23!41;UBERON:0002791!1.07e-22!33;UBERON:0002619!1.65e-22!22;UBERON:0003080!2.77e-22!42;UBERON:0001950!6.41e-21!20;UBERON:0001049!8.11e-20!57;UBERON:0005068!8.11e-20!57;UBERON:0006241!8.11e-20!57;UBERON:0007135!8.11e-20!57;UBERON:0000956!1.33e-19!25;UBERON:0000203!1.33e-19!25;UBERON:0000955!2.65e-19!69;UBERON:0006238!2.65e-19!69;UBERON:0007023!3.15e-19!115;UBERON:0002020!4.17e-19!34;UBERON:0003528!4.17e-19!34;UBERON:0002616!7.68e-17!59;UBERON:0003056!4.74e-16!61;UBERON:0003075!1.36e-14!86;UBERON:0007284!1.36e-14!86;UBERON:0002346!9.91e-14!90;UBERON:0004121!2.76e-12!169;UBERON:0000924!7.50e-12!173;UBERON:0006601!7.50e-12!173;UBERON:0000033!7.59e-10!123;UBERON:0000153!3.64e-09!129;UBERON:0007811!3.64e-09!129;UBERON:0002021!5.61e-08!5;UBERON:0001872!1.05e-07!5|ontology_enrichment_uberon_v019=UBERON:0000922;8.12e-11;49!UBERON:0001473;7.59e-10;8!UBERON:0004536;7.59e-10;8!UBERON:0006558;7.59e-10;8!UBERON:0001950;1.83e-08;20!UBERON:0002465;4.66e-08;10!UBERON:0002619;8.91e-08;22!UBERON:0002114;1.82e-07;2!UBERON:0000956;6.11e-07;25!UBERON:0000203;6.11e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-10,81;UBERON:0001473,7.59e-10,8;UBERON:0004536,7.59e-10,8;UBERON:0006558,7.59e-10,8;UBERON:0001016,2.60e-09,89;UBERON:0001950,1.85e-08,20;UBERON:0002465,4.66e-08,10;UBERON:0002619,9.01e-08,22;UBERON:0002114,1.82e-07,2;UBERON:0000956,6.17e-07,25;UBERON:0000203,6.17e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55050055501597,0.71153252537342,1.00416183829401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60279707715243,1.54657762555539,2.84777651068393,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,7.98455192004777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,12.5489832268501,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.242998226632099,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.615349092722265,11.595298026199,0.345786262321089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,7.65764732625507,0,0,0,0,0,0,0,0,0,0,0,0,0.591954962065642,0,0,0,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,3.47944329401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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26468 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21735 | |||
|TSSclassifier=S | |||
|UniProt=Q9UPM6 | |||
|association_with_transcript=0bp_to_ENST00000541397,ENST00000560485,NM_001242333_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_8_at_LHX6_5end | |||
|id=chr9:124990680..124990719,- | |||
|ontology_enrichment_celltype=CL:0000047!1.39e-08!8;CL:0000540!8.13e-07!6;CL:0000031!8.13e-07!6;CL:0000404!8.13e-07!6;CL:0005020!8.45e-07!6;CL:0002138!8.45e-07!6;CL:0005022!8.45e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;7.11e-13;6!CL:0000404;7.11e-13;6!CL:0002138;8.27e-13;6!CL:0000047;2.60e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.02e-20,8;CL:0000540,6.90e-13,6;CL:0000031,6.90e-13,6;CL:0000404,6.90e-13,6;CL:0005020,8.27e-13,6;CL:0002138,8.27e-13,6;CL:0005022,8.27e-13,6 | |||
|ontology_enrichment_development_v019=CL:0000031;7.11e-13;6!CL:0005022;8.27e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.30e-28!86;UBERON:0001017!9.04e-28!82;UBERON:0000073!4.36e-25!94;UBERON:0001016!4.36e-25!94;UBERON:0001893!5.29e-25!34;UBERON:0001869!1.68e-23!32;UBERON:0002780!6.51e-23!41;UBERON:0001890!6.51e-23!41;UBERON:0006240!6.51e-23!41;UBERON:0002791!1.07e-22!33;UBERON:0002619!1.65e-22!22;UBERON:0003080!2.77e-22!42;UBERON:0001950!6.41e-21!20;UBERON:0001049!8.11e-20!57;UBERON:0005068!8.11e-20!57;UBERON:0006241!8.11e-20!57;UBERON:0007135!8.11e-20!57;UBERON:0000956!1.33e-19!25;UBERON:0000203!1.33e-19!25;UBERON:0000955!2.65e-19!69;UBERON:0006238!2.65e-19!69;UBERON:0007023!3.15e-19!115;UBERON:0002020!4.17e-19!34;UBERON:0003528!4.17e-19!34;UBERON:0002616!7.68e-17!59;UBERON:0003056!4.74e-16!61;UBERON:0003075!1.36e-14!86;UBERON:0007284!1.36e-14!86;UBERON:0002346!9.91e-14!90;UBERON:0004121!2.76e-12!169;UBERON:0000924!7.50e-12!173;UBERON:0006601!7.50e-12!173;UBERON:0000033!7.59e-10!123;UBERON:0000153!3.64e-09!129;UBERON:0007811!3.64e-09!129;UBERON:0002021!5.61e-08!5;UBERON:0001872!1.05e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;8.12e-11;49!UBERON:0001473;7.59e-10;8!UBERON:0004536;7.59e-10;8!UBERON:0006558;7.59e-10;8!UBERON:0001950;1.83e-08;20!UBERON:0002465;4.66e-08;10!UBERON:0002619;8.91e-08;22!UBERON:0002114;1.82e-07;2!UBERON:0000956;6.11e-07;25!UBERON:0000203;6.11e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.32e-10,81;UBERON:0001473,7.59e-10,8;UBERON:0004536,7.59e-10,8;UBERON:0006558,7.59e-10,8;UBERON:0001016,2.60e-09,89;UBERON:0001950,1.85e-08,20;UBERON:0002465,4.66e-08,10;UBERON:0002619,9.01e-08,22;UBERON:0002114,1.82e-07,2;UBERON:0000956,6.17e-07,25;UBERON:0000203,6.17e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55050055501597,0.71153252537342,1.00416183829401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60279707715243,1.54657762555539,2.84777651068393,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,7.98455192004777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,12.5489832268501,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.242998226632099,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.615349092722265,11.595298026199,0.345786262321089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,7.65764732625507,0,0,0,0,0,0,0,0,0,0,0,0,0.591954962065642,0,0,0,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,3.4794432940146,0,0,0,0,0,0,0,0,0.218559560503957,0,0.735444965261716,0,0,0,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.339957450954573,18.3267289942959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p8@LHX6 | |||
}} |
Revision as of 07:20, 14 September 2013
Short description: | p8@LHX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_LHX6_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_ENST00000541397, ENST00000560485, NM_001242333_5end |
EntrezGene: | LHX6 |
HGNC: | 21735 |
UniProt: | Q9UPM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.02e-20 | 8 |
neuron | 6.90e-13 | 6 |
neuroblast | 6.90e-13 | 6 |
electrically signaling cell | 6.90e-13 | 6 |
lymphangioblast | 8.27e-13 | 6 |
endothelial cell of lymphatic vessel | 8.27e-13 | 6 |
vascular lymphangioblast | 8.27e-13 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.32e-10 | 81 |
lymphatic vessel | 7.59e-10 | 8 |
lymph vasculature | 7.59e-10 | 8 |
lymphatic part of lymphoid system | 7.59e-10 | 8 |
nervous system | 2.60e-09 | 89 |
neocortex | 1.85e-08 | 20 |
lymphoid system | 4.66e-08 | 10 |
regional part of cerebral cortex | 9.01e-08 | 22 |
duodenum | 1.82e-07 | 2 |
cerebral cortex | 6.17e-07 | 25 |
pallium | 6.17e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.