FFCP PHASE1:Hg19::chr9:125667739..125667770,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54542|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21461|TSSclassifier=S|UniProt=Q9HBD1|association_with_transcript=-177bp_to_ENST00000357244,ENST00000373665,ENST00000423239,NM_001100588,NM_018835,uc004bnc.2,uc004bne.3,uc010mwc.1,uc011lzg.1_5end|description=CAGE_peak_4_at_RC3H2_5end|id=chr9:125667739..125667770,-|ontology_enrichment_celltype=CL:0002031!1.08e-11!124;CL:0000738!1.75e-10!140;CL:0002087!2.85e-10!119;CL:0000542!3.47e-09!53;CL:0000051!3.47e-09!53;CL:0000838!1.05e-08!52;CL:0000236!3.87e-08!14;CL:0002032!1.08e-07!165;CL:0000837!1.08e-07!165;CL:0000945!1.53e-07!24;CL:0000826!1.53e-07!24;CL:0000037!2.25e-07!172;CL:0000566!2.25e-07!172;CL:0000988!5.38e-07!182|ontology_enrichment_celltype_v019=CL:0000236;3.84e-11;13|ontology_enrichment_celltype_v019_2=CL:0000236,1.89e-10,14|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.16e-20!115;UBERON:0003080!6.08e-08!42;UBERON:0001049!8.63e-08!57;UBERON:0005068!8.63e-08!57;UBERON:0006241!8.63e-08!57;UBERON:0007135!8.63e-08!57;UBERON:0002780!1.39e-07!41;UBERON:0001890!1.39e-07!41;UBERON:0006240!1.39e-07!41;UBERON:0001893!1.82e-07!34;UBERON:0002616!2.66e-07!59;UBERON:0002791!3.73e-07!33;UBERON:0002020!4.02e-07!34;UBERON:0003528!4.02e-07!34|ontology_enrichment_uberon_v019=UBERON:0002780;4.64e-08;41!UBERON:0001890;4.64e-08;41!UBERON:0002370;4.80e-07;2!UBERON:0005058;4.80e-07;2!UBERON:0009113;4.80e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.98e-16,114;UBERON:0002780,7.96e-09,41;UBERON:0001890,7.96e-09,41;UBERON:0003080,7.96e-09,41;UBERON:0006240,7.96e-09,41;UBERON:0000073,1.28e-08,53;UBERON:0002616,1.28e-08,53;UBERON:0001049,5.51e-08,56;UBERON:0005068,5.51e-08,56;UBERON:0006241,5.51e-08,56;UBERON:0007135,5.51e-08,56;UBERON:0003528,8.94e-08,34;UBERON:0002020,8.94e-08,34;UBERON:0002791,6.36e-07,32|phase1_expression=0.181678379270557,0,0.563817616383885,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0,0,0.410623275218653,0.251085279189606,0.382067028739756,0.164201178899891,0.708397031823113,0.393364276848904,0,0.154816123316076,0,0,0,0.387336002901508,0.284338464974843,0.293600439334847,0,0,0.217010870715852,0.447830948479849,1.29557466407592,0.77272670290256,0.581592955118259,0.377875943688809,0.970336244751265,0,1.23350366406548,0.309706370895104,0,0.512321413058201,0.709446689665756,0.689491361473237,0,0,0.376484679085209,0.272906150057846,0.449446968890169,0.612167784741805,0.320929027076094,0.639337125799041,1.64925650093358,0.797854630486527,0.852449501065388,0.580418477257168,0,0,0.502497330513487,0,0,0.605399502633369,0.368277635987565,0.632924774881769,0,0,0.419317291016752,0.112328631146495,0.600707571366025,0,0.855038231223746,0,0,1.75996244461323,2.73069305631066,2.66852776159066,3.41384178053206,2.80277190925209,2.87376219977242,3.30522436392431,0.954053754535364,0.569212969109448,0.587237189370939,0.764546456250458,0,0,0.526768169550154,0.786839080455332,0,0.205601498999509,0.501559486172034,1.30368906653436,0,0,0.222820913770347,0,0.443067789167242,0.541607727530031,0.25618263945135,0.520237390239513,0.493313713811028,0.276350017785848,0,1.33457906845854,1.07016331235885,1.04535523804977,0.113309342697566,0.766440987203842,0.34362744548263,0.506039384039006,0.95569624297229,0.651083453856419,1.90090408889675,0.752875595388864,1.02389288923535,0,0.947109008176067,0.821127996921047,0,0.534880391567015,0.434473211648397,0,0,0.255725123687061,0,0,0,0,0.486634870302636,0.189069634328136,0.221729397462564,0.175669571386252,0.392937226493138,0.364295288292542,0,0,0.696518949197069,0.398873881556595,0,0.571994910780128,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0.735326160691737,0,0.357198913136319,0.673588117878509,0.450445921933289,0,0,0,0,0,0,0,0,0,0.573673241497627,0.354668382198357,0.560677600142307,0,0.49333509683432,0.622422070799533,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0,0,0,0.423863802319124,0,0.103052529238439,0.515281080091258,0.37223371266318,0.675105328965065,0.487185025805993,0,0.368199594569197,0,0,0.10075209822764,0,0.193260853163297,0.272746120590835,0,0,0,0.348581828608555,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.269662616320329,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0.738651018262192,0.936017060556951,0.445893486866185,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0.492663237895943,0.44024217006613,0.2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54542 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21461 | |||
|TSSclassifier=S | |||
|UniProt=Q9HBD1 | |||
|association_with_transcript=-177bp_to_ENST00000357244,ENST00000373665,ENST00000423239,NM_001100588,NM_018835,uc004bnc.2,uc004bne.3,uc010mwc.1,uc011lzg.1_5end | |||
|description=CAGE_peak_4_at_RC3H2_5end | |||
|id=chr9:125667739..125667770,- | |||
|ontology_enrichment_celltype=CL:0002031!1.08e-11!124;CL:0000738!1.75e-10!140;CL:0002087!2.85e-10!119;CL:0000542!3.47e-09!53;CL:0000051!3.47e-09!53;CL:0000838!1.05e-08!52;CL:0000236!3.87e-08!14;CL:0002032!1.08e-07!165;CL:0000837!1.08e-07!165;CL:0000945!1.53e-07!24;CL:0000826!1.53e-07!24;CL:0000037!2.25e-07!172;CL:0000566!2.25e-07!172;CL:0000988!5.38e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000236;3.84e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.89e-10,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.16e-20!115;UBERON:0003080!6.08e-08!42;UBERON:0001049!8.63e-08!57;UBERON:0005068!8.63e-08!57;UBERON:0006241!8.63e-08!57;UBERON:0007135!8.63e-08!57;UBERON:0002780!1.39e-07!41;UBERON:0001890!1.39e-07!41;UBERON:0006240!1.39e-07!41;UBERON:0001893!1.82e-07!34;UBERON:0002616!2.66e-07!59;UBERON:0002791!3.73e-07!33;UBERON:0002020!4.02e-07!34;UBERON:0003528!4.02e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.64e-08;41!UBERON:0001890;4.64e-08;41!UBERON:0002370;4.80e-07;2!UBERON:0005058;4.80e-07;2!UBERON:0009113;4.80e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.98e-16,114;UBERON:0002780,7.96e-09,41;UBERON:0001890,7.96e-09,41;UBERON:0003080,7.96e-09,41;UBERON:0006240,7.96e-09,41;UBERON:0000073,1.28e-08,53;UBERON:0002616,1.28e-08,53;UBERON:0001049,5.51e-08,56;UBERON:0005068,5.51e-08,56;UBERON:0006241,5.51e-08,56;UBERON:0007135,5.51e-08,56;UBERON:0003528,8.94e-08,34;UBERON:0002020,8.94e-08,34;UBERON:0002791,6.36e-07,32 | |||
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| |||
|short_description=p4@RC3H2 | |||
}} |
Revision as of 07:21, 14 September 2013
Short description: | p4@RC3H2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RC3H2_5end |
Coexpression cluster: | NA |
Association with transcript: | -177bp_to_ENST00000357244, ENST00000373665, ENST00000423239, NM_001100588, NM_018835, uc004bnc.2, uc004bne.3, uc010mwc.1, uc011lzg.1_5end |
EntrezGene: | RC3H2 |
HGNC: | 21461 |
UniProt: | Q9HBD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.89e-10 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.98e-16 | 114 |
regional part of forebrain | 7.96e-09 | 41 |
forebrain | 7.96e-09 | 41 |
anterior neural tube | 7.96e-09 | 41 |
future forebrain | 7.96e-09 | 41 |
regional part of nervous system | 1.28e-08 | 53 |
regional part of brain | 1.28e-08 | 53 |
neural tube | 5.51e-08 | 56 |
neural rod | 5.51e-08 | 56 |
future spinal cord | 5.51e-08 | 56 |
neural keel | 5.51e-08 | 56 |
brain grey matter | 8.94e-08 | 34 |
gray matter | 8.94e-08 | 34 |
regional part of telencephalon | 6.36e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.