FFCP PHASE1:Mm9::chr5:68238639..68238678,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11980|HGNC=|MCL_coexpression_id=3526|UniProt=Q8BR88,E9Q4J5,Q3U9N5,P70704,A1L332|association_with_transcript=0bp_to_ENSMUST00000037380,ENSMUST00000113651,ENSMUST00000113652,ENSMUST00000143013,NM_001038999,NM_009727,uc008xqa.1,uc008xqb.1,uc008xqc.1,uc008xqe.1_5end|description=CAGE_peak_1_at_Atp8a1_5end|id=chr5:68238639..68238678,-|ontology_enrichment_celltype=CL:0000540!2.56e-09!33;CL:0000047!2.56e-09!33;CL:0000031!2.56e-09!33;CL:0000404!2.56e-09!33;CL:0000117!3.51e-08!23;CL:0000337!3.51e-08!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.55e-09,33;CL:0000047,2.55e-09,33;CL:0000031,2.55e-09,33;CL:0000404,2.55e-09,33;CL:0000117,3.50e-08,23;CL:0000337,3.50e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.29e-14!73;UBERON:0005743!8.29e-14!73;UBERON:0000073!3.69e-13!75;UBERON:0001016!3.69e-13!75;UBERON:0001049!6.66e-11!52;UBERON:0005068!6.66e-11!52;UBERON:0006241!6.66e-11!52;UBERON:0007135!6.66e-11!52;UBERON:0002020!9.56e-11!34;UBERON:0000955!4.44e-10!50;UBERON:0006238!4.44e-10!50;UBERON:0002616!9.65e-10!49;UBERON:0002791!2.04e-08!29;UBERON:0003528!2.04e-08!29;UBERON:0001893!2.04e-08!29;UBERON:0003080!4.33e-08!40;UBERON:0002780!1.16e-07!39;UBERON:0001890!1.16e-07!39;UBERON:0006240!1.16e-07!39;UBERON:0000033!1.50e-07!63;UBERON:0004121!1.68e-07!102;UBERON:0000924!1.68e-07!102;UBERON:0006601!1.68e-07!102;UBERON:0002048!1.81e-07!14;UBERON:0000117!1.81e-07!14;UBERON:0000171!1.81e-07!14;UBERON:0000170!1.81e-07!14;UBERON:0005597!1.81e-07!14;UBERON:0000118!1.81e-07!14;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0007811!3.81e-07!86;UBERON:0002346!5.52e-07!71;UBERON:0003075!5.52e-07!71;UBERON:0007284!5.52e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.06e-13,73;UBERON:0001016,4.67e-13,75;UBERON:0000073,7.03e-12,54;UBERON:0001049,8.53e-11,52;UBERON:0005068,8.53e-11,52;UBERON:0006241,8.53e-11,52;UBERON:0007135,8.53e-11,52;UBERON:0002020,1.02e-10,34;UBERON:0011216,3.45e-10,194;UBERON:0004121,4.38e-09,95;UBERON:0000924,4.38e-09,95;UBERON:0006601,4.38e-09,95;UBERON:0002346,6.36e-09,64;UBERON:0003075,6.36e-09,64;UBERON:0007284,6.36e-09,64;UBERON:0000955,1.89e-08,47;UBERON:0006238,1.89e-08,47;UBERON:0003528,2.17e-08,29;UBERON:0002791,2.17e-08,29;UBERON:0001893,2.17e-08,29;UBERON:0002616,3.95e-08,46;UBERON:0003080,4.57e-08,40;UBERON:0010371,8.87e-08,73;UBERON:0002780,1.22e-07,39;UBERON:0001890,1.22e-07,39;UBERON:0006240,1.22e-07,39;UBERON:0002048,1.81e-07,14;UBERON:0000117,1.81e-07,14;UBERON:0000171,1.81e-07,14;UBERON:0000170,1.81e-07,14;UBERON:0005597,1.81e-07,14;UBERON:0000118,1.81e-07,14;UBERON:0002021,2.40e-07,10;UBERON:0000411,2.40e-07,10;UBERON:0001950,2.40e-07,10|phase1_expression=9.60893082628764,11.8651638597383,15.0149748998547,25.1045295384669,41.0734498556005,14.4376173844225,9.81173090501208,16.5277854005218,14.782815825925,10.7669682108117,2.91070545983358,3.43020283679947,14.8944635040149,15.7356724354195,19.6534759471241,15.9955461237963,10.4934281719222,20.3473096656063,25.3661702170617,22.9170411970936,31.0408009051405,6.25532992565577,5.74639536105658,3.03985603307473,2.2940928106717,14.9300310669905,12.0613358924541,7.97243560937789,2.09025761402011,6.30075324399827,3.76941868114018,10.7955214488137,15.9916844771988,0,9.24325183204079,3.49092755252834,5.51257261908397,29.7157457823205,18.7520482685712,24.0820922227947,35.2938892818609,31.4200923080885,29.1306211818692,0.251793635951155,0,0.550640256485045,0.782391344348039,0.872100625521786,0.659058548203415,2.13872888981712,2.09979632438044,2.87505128729943,15.7715649694272,18.859415692295,8.4023449785616,0.771778308107841,2.29226751951005,2.06268836910977,17.3992156339254,28.0365219014177,25.9870875437533,0.338844532069132,2.66788438833342,3.1496490104849,7.9109309005358,12.7886420690298,6.5912024314049,11.5265491596466,15.9682002955056,10.2604513132085,11.3575479129746,38.5628828945135,30.4798586513227,11.7591167246356,9.20116521775069,15.6267193723704,78.182275509566,43.7967569632194,51.1509755743291,17.672762555846,20.0357939489277,17.7110545989298,42.1566328492085,42.7699583624077,55.4657639429821,47.7298308467342,47.5521413869004,29.4511124403975,2.80186915332781,11.5624486963382,10.4351215932604,4.30211938490693,0.679971333707751,0,0,0,10.2524426696179,0,0,0,15.4927761754349,0,0,0,1.5154372870785,2.28023878927589,1.51657333504435,9.1347103775248,32.6261733395436,7.86743337043571,3.99016251562112,4.26251669636998,3.92046345335299,4.06951129492081,5.52666923537813,4.64966387919799,1.23597483867187,10.4111536982336,38.0382537338446,3.23533699894818,11.4837589599405,11.6370060752453,29.8226817948995,29.2780797011547,34.3492599174066,9.70736809792647,7.90779821739074,4.19931911695385,6.60765180779936,39.0953568846587,49.8675657072303,15.4554853098823,48.3231610134529,36.3115949409069,33.2460871295296,36.6665254533132,2.85150218780886,9.82815067819735,7.32895999457657,6.31325567659422,2.86264974517948,3.90833577536904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| ||
|EntrezGene=11980 | |||
|HGNC= | |||
|MCL_coexpression_id=3526 | |||
|UniProt=Q8BR88,E9Q4J5,Q3U9N5,P70704,A1L332 | |||
|association_with_transcript=0bp_to_ENSMUST00000037380,ENSMUST00000113651,ENSMUST00000113652,ENSMUST00000143013,NM_001038999,NM_009727,uc008xqa.1,uc008xqb.1,uc008xqc.1,uc008xqe.1_5end | |||
|description=CAGE_peak_1_at_Atp8a1_5end | |||
|id=chr5:68238639..68238678,- | |||
|ontology_enrichment_celltype=CL:0000540!2.56e-09!33;CL:0000047!2.56e-09!33;CL:0000031!2.56e-09!33;CL:0000404!2.56e-09!33;CL:0000117!3.51e-08!23;CL:0000337!3.51e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.55e-09,33;CL:0000047,2.55e-09,33;CL:0000031,2.55e-09,33;CL:0000404,2.55e-09,33;CL:0000117,3.50e-08,23;CL:0000337,3.50e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.29e-14!73;UBERON:0005743!8.29e-14!73;UBERON:0000073!3.69e-13!75;UBERON:0001016!3.69e-13!75;UBERON:0001049!6.66e-11!52;UBERON:0005068!6.66e-11!52;UBERON:0006241!6.66e-11!52;UBERON:0007135!6.66e-11!52;UBERON:0002020!9.56e-11!34;UBERON:0000955!4.44e-10!50;UBERON:0006238!4.44e-10!50;UBERON:0002616!9.65e-10!49;UBERON:0002791!2.04e-08!29;UBERON:0003528!2.04e-08!29;UBERON:0001893!2.04e-08!29;UBERON:0003080!4.33e-08!40;UBERON:0002780!1.16e-07!39;UBERON:0001890!1.16e-07!39;UBERON:0006240!1.16e-07!39;UBERON:0000033!1.50e-07!63;UBERON:0004121!1.68e-07!102;UBERON:0000924!1.68e-07!102;UBERON:0006601!1.68e-07!102;UBERON:0002048!1.81e-07!14;UBERON:0000117!1.81e-07!14;UBERON:0000171!1.81e-07!14;UBERON:0000170!1.81e-07!14;UBERON:0005597!1.81e-07!14;UBERON:0000118!1.81e-07!14;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0007811!3.81e-07!86;UBERON:0002346!5.52e-07!71;UBERON:0003075!5.52e-07!71;UBERON:0007284!5.52e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.06e-13,73;UBERON:0001016,4.67e-13,75;UBERON:0000073,7.03e-12,54;UBERON:0001049,8.53e-11,52;UBERON:0005068,8.53e-11,52;UBERON:0006241,8.53e-11,52;UBERON:0007135,8.53e-11,52;UBERON:0002020,1.02e-10,34;UBERON:0011216,3.45e-10,194;UBERON:0004121,4.38e-09,95;UBERON:0000924,4.38e-09,95;UBERON:0006601,4.38e-09,95;UBERON:0002346,6.36e-09,64;UBERON:0003075,6.36e-09,64;UBERON:0007284,6.36e-09,64;UBERON:0000955,1.89e-08,47;UBERON:0006238,1.89e-08,47;UBERON:0003528,2.17e-08,29;UBERON:0002791,2.17e-08,29;UBERON:0001893,2.17e-08,29;UBERON:0002616,3.95e-08,46;UBERON:0003080,4.57e-08,40;UBERON:0010371,8.87e-08,73;UBERON:0002780,1.22e-07,39;UBERON:0001890,1.22e-07,39;UBERON:0006240,1.22e-07,39;UBERON:0002048,1.81e-07,14;UBERON:0000117,1.81e-07,14;UBERON:0000171,1.81e-07,14;UBERON:0000170,1.81e-07,14;UBERON:0005597,1.81e-07,14;UBERON:0000118,1.81e-07,14;UBERON:0002021,2.40e-07,10;UBERON:0000411,2.40e-07,10;UBERON:0001950,2.40e-07,10 | |||
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| |||
|short_description=p1@Atp8a1 | |||
}} |
Revision as of 07:56, 14 September 2013
Short description: | p1@Atp8a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Atp8a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3526 |
Association with transcript: | 0bp_to_ENSMUST00000037380, ENSMUST00000113651, ENSMUST00000113652, ENSMUST00000143013, NM_001038999, NM_009727, uc008xqa.1, uc008xqb.1, uc008xqc.1, uc008xqe.1_5end |
EntrezGene: | Atp8a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.55e-09 | 33 |
neuronal stem cell | 2.55e-09 | 33 |
neuroblast | 2.55e-09 | 33 |
electrically signaling cell | 2.55e-09 | 33 |
CNS neuron (sensu Vertebrata) | 3.50e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.50e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.06e-13 | 73 |
nervous system | 4.67e-13 | 75 |
regional part of nervous system | 7.03e-12 | 54 |
neural tube | 8.53e-11 | 52 |
neural rod | 8.53e-11 | 52 |
future spinal cord | 8.53e-11 | 52 |
neural keel | 8.53e-11 | 52 |
gray matter | 1.02e-10 | 34 |
organ system subdivision | 3.45e-10 | 194 |
ectoderm-derived structure | 4.38e-09 | 95 |
ectoderm | 4.38e-09 | 95 |
presumptive ectoderm | 4.38e-09 | 95 |
neurectoderm | 6.36e-09 | 64 |
neural plate | 6.36e-09 | 64 |
presumptive neural plate | 6.36e-09 | 64 |
brain | 1.89e-08 | 47 |
future brain | 1.89e-08 | 47 |
brain grey matter | 2.17e-08 | 29 |
regional part of telencephalon | 2.17e-08 | 29 |
telencephalon | 2.17e-08 | 29 |
regional part of brain | 3.95e-08 | 46 |
anterior neural tube | 4.57e-08 | 40 |
ecto-epithelium | 8.87e-08 | 73 |
regional part of forebrain | 1.22e-07 | 39 |
forebrain | 1.22e-07 | 39 |
future forebrain | 1.22e-07 | 39 |
lung | 1.81e-07 | 14 |
respiratory tube | 1.81e-07 | 14 |
respiration organ | 1.81e-07 | 14 |
pair of lungs | 1.81e-07 | 14 |
lung primordium | 1.81e-07 | 14 |
lung bud | 1.81e-07 | 14 |
occipital lobe | 2.40e-07 | 10 |
visual cortex | 2.40e-07 | 10 |
neocortex | 2.40e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.