FFCP PHASE1:Mm9::chr6:144157869..144157876,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20678|HGNC=|MCL_coexpression_id=76|UniProt=|association_with_transcript=123bp_to_ENSMUST00000142294_5end|description=CAGE_peak_26_at_Sox5_5end|id=chr6:144157869..144157876,-|ontology_enrichment_celltype=CL:0002609!1.44e-11!6|ontology_enrichment_celltype_v019_2=CL:0002609,8.31e-47,6;CL:0000117,8.03e-13,23;CL:0000337,8.03e-13,23;CL:0000540,3.89e-09,33;CL:0000047,3.89e-09,33;CL:0000031,3.89e-09,33;CL:0000404,3.89e-09,33;CL:0000393,8.01e-08,39;CL:0000211,8.01e-08,39;CL:0002319,3.79e-07,43;CL:0000221,5.36e-07,44;CL:0000133,5.36e-07,44;CL:0002608,5.46e-07,3;CL:0002321,8.13e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002791!3.93e-07!29;UBERON:0003528!3.93e-07!29;UBERON:0001893!3.93e-07!29;UBERON:0003080!7.55e-07!40;UBERON:0000956!8.20e-07!21;UBERON:0001869!8.20e-07!21;UBERON:0000203!8.20e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000956,5.65e-14,21;UBERON:0001869,5.65e-14,21;UBERON:0000203,5.65e-14,21;UBERON:0003528,2.61e-10,29;UBERON:0002791,2.61e-10,29;UBERON:0001893,2.61e-10,29;UBERON:0002020,6.93e-09,34;UBERON:0002780,8.01e-08,39;UBERON:0001890,8.01e-08,39;UBERON:0006240,8.01e-08,39;UBERON:0003080,1.22e-07,40|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83651565541367,2.8351247049655,2.10324961351382,0,0,0.244981598429908,1.0543001812006,0.919218786610021,0,0,0,0.131886287730194,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0.860423876981386,0,0,1.29955283489534,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0.255715457330331,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0.187403449119458,0,0,0.945530400839096,0.175951124163949,0,0.556094498451196,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.505157755894224,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.18006109403131,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0,0,0,0,0,0.453142408984205,0,0.103787347584177,0,0,0,0.209613162627982,0,0.222246727801615,0,0.320919209591815,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0.294397840268795,0,0,0,0,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0,0,0,0,0,0.749431733813838,0.233931608445408,0,0,0,0.463735671240843|short_description=p26@Sox5}} | ||
|EntrezGene=20678 | |||
|HGNC= | |||
|MCL_coexpression_id=76 | |||
|UniProt= | |||
|association_with_transcript=123bp_to_ENSMUST00000142294_5end | |||
|description=CAGE_peak_26_at_Sox5_5end | |||
|id=chr6:144157869..144157876,- | |||
|ontology_enrichment_celltype=CL:0002609!1.44e-11!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,8.31e-47,6;CL:0000117,8.03e-13,23;CL:0000337,8.03e-13,23;CL:0000540,3.89e-09,33;CL:0000047,3.89e-09,33;CL:0000031,3.89e-09,33;CL:0000404,3.89e-09,33;CL:0000393,8.01e-08,39;CL:0000211,8.01e-08,39;CL:0002319,3.79e-07,43;CL:0000221,5.36e-07,44;CL:0000133,5.36e-07,44;CL:0002608,5.46e-07,3;CL:0002321,8.13e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002791!3.93e-07!29;UBERON:0003528!3.93e-07!29;UBERON:0001893!3.93e-07!29;UBERON:0003080!7.55e-07!40;UBERON:0000956!8.20e-07!21;UBERON:0001869!8.20e-07!21;UBERON:0000203!8.20e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,5.65e-14,21;UBERON:0001869,5.65e-14,21;UBERON:0000203,5.65e-14,21;UBERON:0003528,2.61e-10,29;UBERON:0002791,2.61e-10,29;UBERON:0001893,2.61e-10,29;UBERON:0002020,6.93e-09,34;UBERON:0002780,8.01e-08,39;UBERON:0001890,8.01e-08,39;UBERON:0006240,8.01e-08,39;UBERON:0003080,1.22e-07,40 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83651565541367,2.8351247049655,2.10324961351382,0,0,0.244981598429908,1.0543001812006,0.919218786610021,0,0,0,0.131886287730194,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0.860423876981386,0,0,1.29955283489534,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0.255715457330331,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0.187403449119458,0,0,0.945530400839096,0.175951124163949,0,0.556094498451196,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.505157755894224,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.18006109403131,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0,0,0,0,0,0.453142408984205,0,0.103787347584177,0,0,0,0.209613162627982,0,0.222246727801615,0,0.320919209591815,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0.294397840268795,0,0,0,0,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0,0,0,0,0,0.749431733813838,0.233931608445408,0,0,0,0.463735671240843 | |||
|short_description=p26@Sox5 | |||
}} |
Revision as of 09:19, 14 September 2013
Short description: | p26@Sox5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_26_at_Sox5_5end |
Coexpression cluster: | MCL_coexpression_mm9:76 |
Association with transcript: | 123bp_to_ENSMUST00000142294_5end |
EntrezGene: | Sox5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 8.31e-47 | 6 |
CNS neuron (sensu Vertebrata) | 8.03e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.03e-13 | 23 |
neuron | 3.89e-09 | 33 |
neuronal stem cell | 3.89e-09 | 33 |
neuroblast | 3.89e-09 | 33 |
electrically signaling cell | 3.89e-09 | 33 |
electrically responsive cell | 8.01e-08 | 39 |
electrically active cell | 8.01e-08 | 39 |
neural cell | 3.79e-07 | 43 |
ectodermal cell | 5.36e-07 | 44 |
neurectodermal cell | 5.36e-07 | 44 |
hippocampal neuron | 5.46e-07 | 3 |
embryonic cell | 8.13e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 5.65e-14 | 21 |
cerebral hemisphere | 5.65e-14 | 21 |
pallium | 5.65e-14 | 21 |
brain grey matter | 2.61e-10 | 29 |
regional part of telencephalon | 2.61e-10 | 29 |
telencephalon | 2.61e-10 | 29 |
gray matter | 6.93e-09 | 34 |
regional part of forebrain | 8.01e-08 | 39 |
forebrain | 8.01e-08 | 39 |
future forebrain | 8.01e-08 | 39 |
anterior neural tube | 1.22e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.