FFCP PHASE1:Mm9::chr7:31936164..31936190,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=52857|HGNC=|MCL_coexpression_id=7|UniProt=Q8VEF1,F8WJ74|association_with_transcript=-95bp_to_ENSMUST00000001280,ENSMUST00000085636,NM_027898,uc009gif.1,uc009gig.1_5end|description=CAGE_peak_2_at_Gramd1a_5end|id=chr7:31936164..31936190,-|ontology_enrichment_celltype=CL:0000540!1.87e-11!33;CL:0000047!1.87e-11!33;CL:0000031!1.87e-11!33;CL:0000404!1.87e-11!33;CL:0000117!9.12e-11!23;CL:0000337!9.12e-11!23;CL:0002319!3.72e-09!43;CL:0000393!4.25e-09!39;CL:0000211!4.25e-09!39;CL:0000221!6.04e-09!44;CL:0000133!6.04e-09!44;CL:0000055!6.16e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,7.92e-13,33;CL:0000047,7.92e-13,33;CL:0000031,7.92e-13,33;CL:0000404,7.92e-13,33;CL:0000117,3.11e-12,23;CL:0000337,3.11e-12,23;CL:0000393,7.30e-10,39;CL:0000211,7.30e-10,39;CL:0002319,2.58e-09,43;CL:0000221,8.48e-09,44;CL:0000133,8.48e-09,44;CL:0000838,4.32e-07,12;CL:0000084,4.78e-07,11;CL:0000827,4.78e-07,11;CL:0000542,5.84e-07,13;CL:0000051,5.84e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.23e-19!73;UBERON:0005743!4.23e-19!73;UBERON:0000073!5.75e-18!75;UBERON:0001016!5.75e-18!75;UBERON:0001049!9.48e-16!52;UBERON:0005068!9.48e-16!52;UBERON:0006241!9.48e-16!52;UBERON:0007135!9.48e-16!52;UBERON:0002346!1.18e-15!71;UBERON:0003075!1.18e-15!71;UBERON:0007284!1.18e-15!71;UBERON:0004121!1.46e-15!102;UBERON:0000924!1.46e-15!102;UBERON:0006601!1.46e-15!102;UBERON:0002020!1.72e-15!34;UBERON:0003056!2.51e-15!49;UBERON:0003080!1.63e-14!40;UBERON:0000955!2.52e-14!50;UBERON:0006238!2.52e-14!50;UBERON:0002780!5.68e-14!39;UBERON:0001890!5.68e-14!39;UBERON:0006240!5.68e-14!39;UBERON:0002616!6.59e-14!49;UBERON:0000033!9.54e-14!63;UBERON:0002791!2.83e-13!29;UBERON:0003528!2.83e-13!29;UBERON:0001893!2.83e-13!29;UBERON:0000153!7.41e-12!94;UBERON:0007811!4.43e-11!86;UBERON:0000956!8.79e-10!21;UBERON:0001869!8.79e-10!21;UBERON:0000203!8.79e-10!21;UBERON:0002619!7.13e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.83e-20,73;UBERON:0002346,3.22e-19,64;UBERON:0003075,3.22e-19,64;UBERON:0007284,3.22e-19,64;UBERON:0001016,3.54e-19,75;UBERON:0000073,1.25e-17,54;UBERON:0002020,2.53e-17,34;UBERON:0001049,3.67e-17,52;UBERON:0005068,3.67e-17,52;UBERON:0006241,3.67e-17,52;UBERON:0007135,3.67e-17,52;UBERON:0003056,5.29e-17,49;UBERON:0004121,2.42e-16,95;UBERON:0000924,2.42e-16,95;UBERON:0006601,2.42e-16,95;UBERON:0003080,8.34e-16,40;UBERON:0010371,1.18e-15,73;UBERON:0000955,3.25e-15,47;UBERON:0006238,3.25e-15,47;UBERON:0002780,3.49e-15,39;UBERON:0001890,3.49e-15,39;UBERON:0006240,3.49e-15,39;UBERON:0003528,9.33e-15,29;UBERON:0002791,9.33e-15,29;UBERON:0001893,9.33e-15,29;UBERON:0002616,9.75e-15,46;UBERON:0000956,1.02e-10,21;UBERON:0001869,1.02e-10,21;UBERON:0000203,1.02e-10,21;UBERON:0010314,6.74e-09,92;UBERON:0002619,1.61e-08,17;UBERON:0002021,8.68e-07,10;UBERON:0000411,8.68e-07,10;UBERON:0001950,8.68e-07,10|phase1_expression=1.12104192973356,0,0,0,0,0,0,2.58246646883153,13.7972947708633,25.0449043164533,2.56826952338257,2.6324812468461,1.88320802924326,4.37102012094987,0.333109761815663,1.21485160433896,0.699561878128147,2.20823515750766,1.91960207048034,1.69755860719212,0.680346321208558,4.66667470644161,1.82839852397255,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0.7813353445238,0.523523743973798,0.588231488031014,1.36609096991689,0,1.1330713617802,0.912392380975631,0.183546752161682,0.782391344348039,1.09012578190223,2.41654801007919,0.777719596297134,1.25987779462826,1.43752564364972,1.51004345451963,2.90144856804538,1.68046899571232,0.514518872071894,1.14613375975503,0.515672092277442,5.26022798234954,8.99284664762456,7.60597684207415,1.0165335962074,0,0.899899717281399,0.988866362566974,0,0.599200221036809,0.768436610643109,3.42175720617976,3.64516033495565,2.10324961351382,3.42781181284564,1.98781686856452,6.98197555525238,6.90087391331302,2.75765635983006,1.10115880999389,1.78762273319263,1.53606533256243,5.67111037239834,5.21479568533735,6.77187381723788,1.3959149950069,2.25105044012672,1.5279824777681,1.76777151284201,2.84743361598206,5.59198337475902,0.757261933331841,0.151143120213571,2.6087803983151,0,0,0,0,0,0.561777680527007,0.340860645156116,0.259786004602869,0,0.845060518660083,1.28326477414318,0,0,0,0,0,0.68510327831436,2.33044095282455,0.29688427812965,1.21439728736295,2.43572382649713,0.922461989024234,0.753613202763113,0.823120949949934,0.376999773989026,0.741584903203122,1.3013942122792,0,0.485300549842228,0.662524555381181,0.484875253135222,0,1.46390398505774,0.209446706813455,0.766371165625774,3.11519323715393,1.79970819298022,1.65191295194984,3.2953940669061,2.74500361691176,7.28795242254614,2.78118912307642,4.09144731728529,1.45451631191692,2.10913641988085,1.12023300235348,1.36847667671102,0.252722758433675,0.210441855886474,2.47228841629137,0.459804208866946,2.16074555766419,2.71268672104287,2.31324097114515,1.92170580427275,2.06143794031403,1.29351685369508,1.07783996466421,1.32374256117473,1.40760899331159,1.315174394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| ||
|EntrezGene=52857 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=Q8VEF1,F8WJ74 | |||
|association_with_transcript=-95bp_to_ENSMUST00000001280,ENSMUST00000085636,NM_027898,uc009gif.1,uc009gig.1_5end | |||
|description=CAGE_peak_2_at_Gramd1a_5end | |||
|id=chr7:31936164..31936190,- | |||
|ontology_enrichment_celltype=CL:0000540!1.87e-11!33;CL:0000047!1.87e-11!33;CL:0000031!1.87e-11!33;CL:0000404!1.87e-11!33;CL:0000117!9.12e-11!23;CL:0000337!9.12e-11!23;CL:0002319!3.72e-09!43;CL:0000393!4.25e-09!39;CL:0000211!4.25e-09!39;CL:0000221!6.04e-09!44;CL:0000133!6.04e-09!44;CL:0000055!6.16e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.92e-13,33;CL:0000047,7.92e-13,33;CL:0000031,7.92e-13,33;CL:0000404,7.92e-13,33;CL:0000117,3.11e-12,23;CL:0000337,3.11e-12,23;CL:0000393,7.30e-10,39;CL:0000211,7.30e-10,39;CL:0002319,2.58e-09,43;CL:0000221,8.48e-09,44;CL:0000133,8.48e-09,44;CL:0000838,4.32e-07,12;CL:0000084,4.78e-07,11;CL:0000827,4.78e-07,11;CL:0000542,5.84e-07,13;CL:0000051,5.84e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.23e-19!73;UBERON:0005743!4.23e-19!73;UBERON:0000073!5.75e-18!75;UBERON:0001016!5.75e-18!75;UBERON:0001049!9.48e-16!52;UBERON:0005068!9.48e-16!52;UBERON:0006241!9.48e-16!52;UBERON:0007135!9.48e-16!52;UBERON:0002346!1.18e-15!71;UBERON:0003075!1.18e-15!71;UBERON:0007284!1.18e-15!71;UBERON:0004121!1.46e-15!102;UBERON:0000924!1.46e-15!102;UBERON:0006601!1.46e-15!102;UBERON:0002020!1.72e-15!34;UBERON:0003056!2.51e-15!49;UBERON:0003080!1.63e-14!40;UBERON:0000955!2.52e-14!50;UBERON:0006238!2.52e-14!50;UBERON:0002780!5.68e-14!39;UBERON:0001890!5.68e-14!39;UBERON:0006240!5.68e-14!39;UBERON:0002616!6.59e-14!49;UBERON:0000033!9.54e-14!63;UBERON:0002791!2.83e-13!29;UBERON:0003528!2.83e-13!29;UBERON:0001893!2.83e-13!29;UBERON:0000153!7.41e-12!94;UBERON:0007811!4.43e-11!86;UBERON:0000956!8.79e-10!21;UBERON:0001869!8.79e-10!21;UBERON:0000203!8.79e-10!21;UBERON:0002619!7.13e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.83e-20,73;UBERON:0002346,3.22e-19,64;UBERON:0003075,3.22e-19,64;UBERON:0007284,3.22e-19,64;UBERON:0001016,3.54e-19,75;UBERON:0000073,1.25e-17,54;UBERON:0002020,2.53e-17,34;UBERON:0001049,3.67e-17,52;UBERON:0005068,3.67e-17,52;UBERON:0006241,3.67e-17,52;UBERON:0007135,3.67e-17,52;UBERON:0003056,5.29e-17,49;UBERON:0004121,2.42e-16,95;UBERON:0000924,2.42e-16,95;UBERON:0006601,2.42e-16,95;UBERON:0003080,8.34e-16,40;UBERON:0010371,1.18e-15,73;UBERON:0000955,3.25e-15,47;UBERON:0006238,3.25e-15,47;UBERON:0002780,3.49e-15,39;UBERON:0001890,3.49e-15,39;UBERON:0006240,3.49e-15,39;UBERON:0003528,9.33e-15,29;UBERON:0002791,9.33e-15,29;UBERON:0001893,9.33e-15,29;UBERON:0002616,9.75e-15,46;UBERON:0000956,1.02e-10,21;UBERON:0001869,1.02e-10,21;UBERON:0000203,1.02e-10,21;UBERON:0010314,6.74e-09,92;UBERON:0002619,1.61e-08,17;UBERON:0002021,8.68e-07,10;UBERON:0000411,8.68e-07,10;UBERON:0001950,8.68e-07,10 | |||
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| |||
|short_description=p2@Gramd1a | |||
}} |
Revision as of 13:19, 14 September 2013
Short description: | p2@Gramd1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gramd1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | -95bp_to_ENSMUST00000001280, ENSMUST00000085636, NM_027898, uc009gif.1, uc009gig.1_5end |
EntrezGene: | Gramd1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.92e-13 | 33 |
neuronal stem cell | 7.92e-13 | 33 |
neuroblast | 7.92e-13 | 33 |
electrically signaling cell | 7.92e-13 | 33 |
CNS neuron (sensu Vertebrata) | 3.11e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.11e-12 | 23 |
electrically responsive cell | 7.30e-10 | 39 |
electrically active cell | 7.30e-10 | 39 |
neural cell | 2.58e-09 | 43 |
ectodermal cell | 8.48e-09 | 44 |
neurectodermal cell | 8.48e-09 | 44 |
lymphoid lineage restricted progenitor cell | 4.32e-07 | 12 |
T cell | 4.78e-07 | 11 |
pro-T cell | 4.78e-07 | 11 |
lymphocyte | 5.84e-07 | 13 |
common lymphoid progenitor | 5.84e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.83e-20 | 73 |
neurectoderm | 3.22e-19 | 64 |
neural plate | 3.22e-19 | 64 |
presumptive neural plate | 3.22e-19 | 64 |
nervous system | 3.54e-19 | 75 |
regional part of nervous system | 1.25e-17 | 54 |
gray matter | 2.53e-17 | 34 |
neural tube | 3.67e-17 | 52 |
neural rod | 3.67e-17 | 52 |
future spinal cord | 3.67e-17 | 52 |
neural keel | 3.67e-17 | 52 |
pre-chordal neural plate | 5.29e-17 | 49 |
ectoderm-derived structure | 2.42e-16 | 95 |
ectoderm | 2.42e-16 | 95 |
presumptive ectoderm | 2.42e-16 | 95 |
anterior neural tube | 8.34e-16 | 40 |
ecto-epithelium | 1.18e-15 | 73 |
brain | 3.25e-15 | 47 |
future brain | 3.25e-15 | 47 |
regional part of forebrain | 3.49e-15 | 39 |
forebrain | 3.49e-15 | 39 |
future forebrain | 3.49e-15 | 39 |
brain grey matter | 9.33e-15 | 29 |
regional part of telencephalon | 9.33e-15 | 29 |
telencephalon | 9.33e-15 | 29 |
regional part of brain | 9.75e-15 | 46 |
cerebral cortex | 1.02e-10 | 21 |
cerebral hemisphere | 1.02e-10 | 21 |
pallium | 1.02e-10 | 21 |
structure with developmental contribution from neural crest | 6.74e-09 | 92 |
regional part of cerebral cortex | 1.61e-08 | 17 |
occipital lobe | 8.68e-07 | 10 |
visual cortex | 8.68e-07 | 10 |
neocortex | 8.68e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.