FFCP PHASE1:Mm9::chr8:106694438..106694512,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=65115|HGNC=|MCL_coexpression_id=1|UniProt=Q9EQG5,E9Q314,E9PVP2,B2RR23|association_with_transcript=25bp_to_ENSMUST00000093245,ENSMUST00000164076,ENSMUST00000167633,ENSMUST00000171018,NM_001141922,NM_001141924,NM_001141925,uc009mzy.2,uc012giu.1,uc012giv.1_5end|description=CAGE_peak_1_at_Bean1_5end|id=chr8:106694438..106694512,+|ontology_enrichment_celltype=CL:0000117!1.19e-10!23;CL:0000337!1.19e-10!23;CL:0000540!1.33e-07!33;CL:0000047!1.33e-07!33;CL:0000031!1.33e-07!33;CL:0000404!1.33e-07!33;CL:0000393!5.39e-07!39;CL:0000211!5.39e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.22e-11,23;CL:0000337,2.22e-11,23;CL:0000540,6.89e-07,33;CL:0000047,6.89e-07,33;CL:0000031,6.89e-07,33;CL:0000404,6.89e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.34e-21!102;UBERON:0000924!1.34e-21!102;UBERON:0006601!1.34e-21!102;UBERON:0002346!6.74e-21!71;UBERON:0003075!6.74e-21!71;UBERON:0007284!6.74e-21!71;UBERON:0000073!4.20e-17!75;UBERON:0001016!4.20e-17!75;UBERON:0001049!6.24e-17!52;UBERON:0005068!6.24e-17!52;UBERON:0006241!6.24e-17!52;UBERON:0007135!6.24e-17!52;UBERON:0001017!2.47e-16!73;UBERON:0005743!2.47e-16!73;UBERON:0000033!1.90e-15!63;UBERON:0000955!3.10e-15!50;UBERON:0006238!3.10e-15!50;UBERON:0002616!9.84e-15!49;UBERON:0002020!1.85e-14!34;UBERON:0003056!5.55e-12!49;UBERON:0003080!6.28e-12!40;UBERON:0002780!2.32e-11!39;UBERON:0001890!2.32e-11!39;UBERON:0006240!2.32e-11!39;UBERON:0002791!3.45e-11!29;UBERON:0003528!3.45e-11!29;UBERON:0001893!3.45e-11!29;UBERON:0002021!3.38e-08!10;UBERON:0000411!3.38e-08!10;UBERON:0001950!3.38e-08!10;UBERON:0000956!2.67e-07!21;UBERON:0001869!2.67e-07!21;UBERON:0000203!2.67e-07!21;UBERON:0000468!3.26e-07!333;UBERON:0007811!6.70e-07!86;UBERON:0002619!8.16e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.07e-20,54;UBERON:0001049,2.31e-19,52;UBERON:0005068,2.31e-19,52;UBERON:0006241,2.31e-19,52;UBERON:0007135,2.31e-19,52;UBERON:0010371,4.61e-19,73;UBERON:0004121,1.19e-18,95;UBERON:0000924,1.19e-18,95;UBERON:0006601,1.19e-18,95;UBERON:0002346,1.85e-18,64;UBERON:0003075,1.85e-18,64;UBERON:0007284,1.85e-18,64;UBERON:0001016,3.48e-18,75;UBERON:0001017,2.84e-17,73;UBERON:0010314,7.50e-17,92;UBERON:0002020,8.41e-17,34;UBERON:0000955,2.29e-15,47;UBERON:0006238,2.29e-15,47;UBERON:0002616,8.94e-15,46;UBERON:0003080,5.69e-13,40;UBERON:0003528,8.46e-13,29;UBERON:0002791,8.46e-13,29;UBERON:0001893,8.46e-13,29;UBERON:0002780,2.71e-12,39;UBERON:0001890,2.71e-12,39;UBERON:0006240,2.71e-12,39;UBERON:0003056,3.09e-12,49;UBERON:0002021,8.57e-10,10;UBERON:0000411,8.57e-10,10;UBERON:0001950,8.57e-10,10;UBERON:0002619,4.47e-08,17;UBERON:0000956,4.69e-08,21;UBERON:0001869,4.69e-08,21;UBERON:0000203,4.69e-08,21;UBERON:0003076,2.07e-07,12;UBERON:0003057,2.07e-07,12|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,3.12956537739216,0,0,0,0.839918529752175,0,0,0,0,2.05807548828758,3.43840127926508,1.03134418455488,6.06949382578793,9.52183762689659,5.07065122804943,1.35537812827653,0,0,0,0,0.299600110518405,0,0.933206510776299,1.35005938331691,1.05162480675691,11.4260393761521,9.05561017901615,1.71487118900936,1.82106394934649,0.919218786610021,4.40463523997555,5.74593021383345,4.91540906419979,6.4624280987795,4.94033275453012,3.64639359389732,5.02529398202486,2.8138130501584,3.36156145108982,12.9636577608414,11.10499110233,6.71038004971082,2.34751199332871,2.64500460373749,0,0,0,0,0,0,0.702222100658759,0,0,0,1.83096445709685,0,0,0,0,0,0,0.11418387971906,0,4.30482203287992,4.3371331691534,8.8294988710521,5.07354093963329,5.42601505989441,3.99801604261396,1.0053327306374,0.247194967734374,0.578397427679647,0.884610551949874,0.647067399789637,0.220841518460394,0,0,2.63502717310392,1.67557365450764,0.255457055208591,0,0,0,6.5907881338122,3.66000482254901,5.78010019719176,8.16974304903699,6.64860189058859,6.64921742590592,3.56930778749067,2.34230536855727,0.124406970610093,0.252722758433675,0.420883711772948,0.130120442962704,0.919608417733892,1.44049703844279,1.05493372485001,1.90502197623718,1.0249097622788,2.52994656311268,1.29351685369508,0,0.378212160335639,0.527853372491847,0.876782929710299,0.556094498451196,1.0447564995665,1.23469281844766,1.39323986772945,0,0,0,0,0.703578179943289,0.900310307305074,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,1.07309360559848,0.350296027101508,0.987359099480883,0.492502392237286,0.729619285912702,1.31579988682799,0.439100230582101,0.939444931322602,3.57492912559016,4.42489833230923,0,0.528901133327089,1.70630600428187,0,0.77320476793256,0.403367049246685,0.889512175379481,1.14135375667535,0,1.15289268306808,2.01068167040216,0.994782360205754,0.779856348476481,0,0.432276099749388,0.995706366271836,0.758671603812327,1.94222471436539,0,1.01825663922657,1.16371492300575,1.47285221769669,0.632365371242573,0.147610147979602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| ||
|EntrezGene=65115 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9EQG5,E9Q314,E9PVP2,B2RR23 | |||
|association_with_transcript=25bp_to_ENSMUST00000093245,ENSMUST00000164076,ENSMUST00000167633,ENSMUST00000171018,NM_001141922,NM_001141924,NM_001141925,uc009mzy.2,uc012giu.1,uc012giv.1_5end | |||
|description=CAGE_peak_1_at_Bean1_5end | |||
|id=chr8:106694438..106694512,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-10!23;CL:0000337!1.19e-10!23;CL:0000540!1.33e-07!33;CL:0000047!1.33e-07!33;CL:0000031!1.33e-07!33;CL:0000404!1.33e-07!33;CL:0000393!5.39e-07!39;CL:0000211!5.39e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.22e-11,23;CL:0000337,2.22e-11,23;CL:0000540,6.89e-07,33;CL:0000047,6.89e-07,33;CL:0000031,6.89e-07,33;CL:0000404,6.89e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.34e-21!102;UBERON:0000924!1.34e-21!102;UBERON:0006601!1.34e-21!102;UBERON:0002346!6.74e-21!71;UBERON:0003075!6.74e-21!71;UBERON:0007284!6.74e-21!71;UBERON:0000073!4.20e-17!75;UBERON:0001016!4.20e-17!75;UBERON:0001049!6.24e-17!52;UBERON:0005068!6.24e-17!52;UBERON:0006241!6.24e-17!52;UBERON:0007135!6.24e-17!52;UBERON:0001017!2.47e-16!73;UBERON:0005743!2.47e-16!73;UBERON:0000033!1.90e-15!63;UBERON:0000955!3.10e-15!50;UBERON:0006238!3.10e-15!50;UBERON:0002616!9.84e-15!49;UBERON:0002020!1.85e-14!34;UBERON:0003056!5.55e-12!49;UBERON:0003080!6.28e-12!40;UBERON:0002780!2.32e-11!39;UBERON:0001890!2.32e-11!39;UBERON:0006240!2.32e-11!39;UBERON:0002791!3.45e-11!29;UBERON:0003528!3.45e-11!29;UBERON:0001893!3.45e-11!29;UBERON:0002021!3.38e-08!10;UBERON:0000411!3.38e-08!10;UBERON:0001950!3.38e-08!10;UBERON:0000956!2.67e-07!21;UBERON:0001869!2.67e-07!21;UBERON:0000203!2.67e-07!21;UBERON:0000468!3.26e-07!333;UBERON:0007811!6.70e-07!86;UBERON:0002619!8.16e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.07e-20,54;UBERON:0001049,2.31e-19,52;UBERON:0005068,2.31e-19,52;UBERON:0006241,2.31e-19,52;UBERON:0007135,2.31e-19,52;UBERON:0010371,4.61e-19,73;UBERON:0004121,1.19e-18,95;UBERON:0000924,1.19e-18,95;UBERON:0006601,1.19e-18,95;UBERON:0002346,1.85e-18,64;UBERON:0003075,1.85e-18,64;UBERON:0007284,1.85e-18,64;UBERON:0001016,3.48e-18,75;UBERON:0001017,2.84e-17,73;UBERON:0010314,7.50e-17,92;UBERON:0002020,8.41e-17,34;UBERON:0000955,2.29e-15,47;UBERON:0006238,2.29e-15,47;UBERON:0002616,8.94e-15,46;UBERON:0003080,5.69e-13,40;UBERON:0003528,8.46e-13,29;UBERON:0002791,8.46e-13,29;UBERON:0001893,8.46e-13,29;UBERON:0002780,2.71e-12,39;UBERON:0001890,2.71e-12,39;UBERON:0006240,2.71e-12,39;UBERON:0003056,3.09e-12,49;UBERON:0002021,8.57e-10,10;UBERON:0000411,8.57e-10,10;UBERON:0001950,8.57e-10,10;UBERON:0002619,4.47e-08,17;UBERON:0000956,4.69e-08,21;UBERON:0001869,4.69e-08,21;UBERON:0000203,4.69e-08,21;UBERON:0003076,2.07e-07,12;UBERON:0003057,2.07e-07,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,3.12956537739216,0,0,0,0.839918529752175,0,0,0,0,2.05807548828758,3.43840127926508,1.03134418455488,6.06949382578793,9.52183762689659,5.07065122804943,1.35537812827653,0,0,0,0,0.299600110518405,0,0.933206510776299,1.35005938331691,1.05162480675691,11.4260393761521,9.05561017901615,1.71487118900936,1.82106394934649,0.919218786610021,4.40463523997555,5.74593021383345,4.91540906419979,6.4624280987795,4.94033275453012,3.64639359389732,5.02529398202486,2.8138130501584,3.36156145108982,12.9636577608414,11.10499110233,6.71038004971082,2.34751199332871,2.64500460373749,0,0,0,0,0,0,0.702222100658759,0,0,0,1.83096445709685,0,0,0,0,0,0,0.11418387971906,0,4.30482203287992,4.3371331691534,8.8294988710521,5.07354093963329,5.42601505989441,3.99801604261396,1.0053327306374,0.247194967734374,0.578397427679647,0.884610551949874,0.647067399789637,0.220841518460394,0,0,2.63502717310392,1.67557365450764,0.255457055208591,0,0,0,6.5907881338122,3.66000482254901,5.78010019719176,8.16974304903699,6.64860189058859,6.64921742590592,3.56930778749067,2.34230536855727,0.124406970610093,0.252722758433675,0.420883711772948,0.130120442962704,0.919608417733892,1.44049703844279,1.05493372485001,1.90502197623718,1.0249097622788,2.52994656311268,1.29351685369508,0,0.378212160335639,0.527853372491847,0.876782929710299,0.556094498451196,1.0447564995665,1.23469281844766,1.39323986772945,0,0,0,0,0.703578179943289,0.900310307305074,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,1.07309360559848,0.350296027101508,0.987359099480883,0.492502392237286,0.729619285912702,1.31579988682799,0.439100230582101,0.939444931322602,3.57492912559016,4.42489833230923,0,0.528901133327089,1.70630600428187,0,0.77320476793256,0.403367049246685,0.889512175379481,1.14135375667535,0,1.15289268306808,2.01068167040216,0.994782360205754,0.779856348476481,0,0.432276099749388,0.995706366271836,0.758671603812327,1.94222471436539,0,1.01825663922657,1.16371492300575,1.47285221769669,0.632365371242573,0.147610147979602,0,0,0,0.500535317148282,0,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,1.30371981153621,0.169745085775188,0,0.502518772325447,0.238043640886014,0.585400943573396,0.157635144106191,0.221464689648775,0.318909537314974,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,4.49541651965817,4.92289083687253,0,1.00988370881749,0.94652465824877,1.56175497718655,2.36965737506079,0,0.891194696329576,0,0,0.292255857911312,0.790575555893047,4.17717711348349,5.96148357874728,1.6025904330053,2.28041743095006,0.824850614862677,0,0.242780636154981,0.906970670894253,0,0,0.307435147943927,0.516856586336442,0,1.06949213515416,0,0,0,0.340439605753788,0,0.388076051348264,1.07168517515796,0.886701168211368,1.78368817602071,2.79733335023606,2.13125464380219,1.87737366450968,0.21183207086382,0.220528398054962,1.31909002353184,2.74489525383039,2.11095237248546,2.50681922406587,3.11867709515616,0.582961673259701,5.56275906031529,0,1.03193433981611,0.925972636848558,0,0.136694227721025,0,0.509935289981566,0.419854356970974,0,0,0,1.42323626988794,0.324016022465404,0.836353184057875,0.436725127492355,1.61837215661785,1.48776220305605,0.26175594198403,0.90730481304255,0.621339313086926,0,0.598066184175915,1.15820943319968,2.52786544847262,2.97067593998782,1.85851738039856,1.76035857968631,0.911430693907651,0.524296722128554,0.483168241652012,0,0,0.405450430580328,1.54066435747241,0.389762468933385,0.358053391334963,0.39736270956253,0.360586348559907,0.295379054349154,0.100966449948148,0,0,0.0974578807397524,0,0.116876902181569,1.58711268530648,0,0.0897138566094757,0.167884616364078,2.89784391048286,1.68914227906064,0.915758121336325,0.643105137237198,0.501572104035363,14.1187960654267,11.0478056761722,9.73922372846974,11.6860163993708,13.0165678756422,14.3524840504043,5.40018000185445,10.8077088773813,8.15656336171568,17.0860902878101,0.103787347584177,1.19707462020309,0.853668028770671,1.21553358534147,2.09613162627982,1.65459157605013,1.11123363900808,2.26638562962784,2.24643446714271,2.52697211763797,2.78827229879264,1.50901073108861,1.591905626988,2.75308155340938,1.55075766180156,2.38146845641537,1.50649623728312,2.12200142510076,2.47251540481984,2.50238164228475,1.71434626192708,2.8396128985494,1.66905332963125,1.59881058295561,2.25862512996793,2.28459441307527,1.64635175585495,2.63069711437843,1.62964936615034,2.24456908663095,2.49133538060766,2.65962102414021,2.04615521584845,1.85924209423159,2.3148793317737,3.99696924700713,1.63752125911786,2.79332370262788,1.72159498861959,2.20591419119516,2.78241402744506 | |||
|short_description=p1@Bean1 | |||
}} |
Revision as of 14:32, 14 September 2013
Short description: | p1@Bean1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Bean1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 25bp_to_ENSMUST00000093245, ENSMUST00000164076, ENSMUST00000167633, ENSMUST00000171018, NM_001141922, NM_001141924, NM_001141925, uc009mzy.2, uc012giu.1, uc012giv.1_5end |
EntrezGene: | Bean1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.22e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.22e-11 | 23 |
neuron | 6.89e-07 | 33 |
neuronal stem cell | 6.89e-07 | 33 |
neuroblast | 6.89e-07 | 33 |
electrically signaling cell | 6.89e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.