FFCP PHASE1:Mm9::chr8:73397376..73397400,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=234388|HGNC=|MCL_coexpression_id=1420|UniProt=Q9D8X2|association_with_transcript=0bp_to_ENSMUST00000007865,NM_026964,uc009mby.1_5end|description=CAGE_peak_1_at_Ccdc124_5end|id=chr8:73397376..73397400,-|ontology_enrichment_celltype=CL:0002319!6.47e-14!43;CL:0000548!1.22e-13!115;CL:0000004!1.22e-13!115;CL:0000255!1.22e-13!115;CL:0002371!3.94e-13!118;CL:0000221!6.67e-13!44;CL:0000133!6.67e-13!44;CL:0002321!1.15e-12!70;CL:0000220!1.15e-12!70;CL:0000117!2.84e-12!23;CL:0000337!2.84e-12!23;CL:0000144!2.73e-11!121;CL:0000012!2.73e-11!121;CL:0000055!3.84e-11!50;CL:0000540!3.14e-09!33;CL:0000047!3.14e-09!33;CL:0000031!3.14e-09!33;CL:0000404!3.14e-09!33|ontology_enrichment_celltype_v019_2=CL:0002319,6.47e-14,43;CL:0000221,6.67e-13,44;CL:0000133,6.67e-13,44;CL:0002321,1.15e-12,70;CL:0000117,2.84e-12,23;CL:0000337,2.84e-12,23;CL:0000540,3.14e-09,33;CL:0000047,3.14e-09,33;CL:0000031,3.14e-09,33;CL:0000404,3.14e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.80e-19!75;UBERON:0001016!1.80e-19!75;UBERON:0001017!5.18e-19!73;UBERON:0005743!5.18e-19!73;UBERON:0002020!2.51e-17!34;UBERON:0001049!2.87e-15!52;UBERON:0005068!2.87e-15!52;UBERON:0006241!2.87e-15!52;UBERON:0007135!2.87e-15!52;UBERON:0002791!8.63e-15!29;UBERON:0003528!8.63e-15!29;UBERON:0001893!8.63e-15!29;UBERON:0000955!3.65e-14!50;UBERON:0006238!3.65e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0004121!2.12e-11!102;UBERON:0000924!2.12e-11!102;UBERON:0006601!2.12e-11!102;UBERON:0003080!1.47e-10!40;UBERON:0002780!1.89e-10!39;UBERON:0001890!1.89e-10!39;UBERON:0006240!1.89e-10!39;UBERON:0002619!5.37e-10!17;UBERON:0000033!8.51e-10!63;UBERON:0002346!7.41e-09!71;UBERON:0003075!7.41e-09!71;UBERON:0007284!7.41e-09!71;UBERON:0003056!6.44e-08!49;UBERON:0002021!4.47e-07!10;UBERON:0000411!4.47e-07!10;UBERON:0001950!4.47e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-19,75;UBERON:0001017,5.18e-19,73;UBERON:0002020,2.51e-17,34;UBERON:0000073,2.67e-16,54;UBERON:0001049,2.87e-15,52;UBERON:0005068,2.87e-15,52;UBERON:0006241,2.87e-15,52;UBERON:0007135,2.87e-15,52;UBERON:0003528,8.63e-15,29;UBERON:0002791,8.63e-15,29;UBERON:0001893,8.63e-15,29;UBERON:0004121,2.66e-14,95;UBERON:0000924,2.66e-14,95;UBERON:0006601,2.66e-14,95;UBERON:0000955,8.43e-13,47;UBERON:0006238,8.43e-13,47;UBERON:0002616,1.83e-12,46;UBERON:0002346,5.43e-12,64;UBERON:0003075,5.43e-12,64;UBERON:0007284,5.43e-12,64;UBERON:0000956,2.03e-11,21;UBERON:0001869,2.03e-11,21;UBERON:0000203,2.03e-11,21;UBERON:0003080,1.47e-10,40;UBERON:0002780,1.89e-10,39;UBERON:0001890,1.89e-10,39;UBERON:0006240,1.89e-10,39;UBERON:0002619,5.37e-10,17;UBERON:0010371,1.65e-09,73;UBERON:0010314,1.78e-08,92;UBERON:0003056,6.44e-08,49;UBERON:0002021,4.47e-07,10;UBERON:0000411,4.47e-07,10;UBERON:0001950,4.47e-07,10|phase1_expression=13.6126520039075,38.7362702479691,28.2099528421512,43.5548464281835,50.0895729946347,32.7364580228185,42.2838879477901,17.0442786942881,23.65250532148,28.5558722112832,44.1742358021803,28.0000278073631,21.0576897815383,20.7186353733024,35.9758542760916,30.9787159106434,34.2785320282792,23.5019313191887,17.0021897671116,21.2194825899015,28.9147186513637,18.9645716793691,25.8587791247546,30.7185451763341,26.1526580416574,31.0085260622111,30.1533397311352,32.3206849028834,27.3633724017178,20.6664706403143,27.9380443425684,38.7368710810375,43.0545351309199,15.8481681015439,14.4425809875637,22.7741464141135,18.3752420636132,23.0192396905299,38.2854318816662,20.9409497589519,26.4704169613956,20.4913645487534,33.9857247121808,11.2048167998264,13.3817549209759,14.6837401729345,115.011527619162,93.750817243592,63.2696206275279,73.1056420519306,61.1740662502834,86.2515386189829,27.1807821813533,26.1130371124084,26.2153163331122,46.8212173585423,30.659078073447,25.7836046138721,81.9381666481371,65.5948814297321,76.0597684207415,82.3392212927991,48.0219189900015,69.7422280893084,72.1872444673891,83.1261734486937,58.1224214405705,80.3016258122049,48.1119801111336,51.4372625043741,55.9464397194676,76.5544638202194,89.4517590854035,70.4322095485986,64.1206201112001,64.3453150627015,64.9683697896393,59.885361561953,55.1447454389914,73.8563211289085,71.3603620098795,69.8023916546058,72.8667627393604,46.7092966326294,56.9937464207502,43.6050306501028,63.640141317199,56.1062331934155,47.1774184465737,32.1179130453838,34.4938741554997,45.6024654800135,38.078394687634,28.0645659651665,33.1385972898311,42.1145273871495,30.1955503283267,26.7575606447551,53.515916948191,59.3610485177372,17.3237406325317,55.1803852881567,155.431196221054,270.205347198266,55.8546885808932,62.5798867723494,64.2016045168775,19.2970756725211,15.7952109024775,17.6646145487141,27.9311376093479,15.5277393939192,18.6798552777407,19.4432206312883,18.34383831317,32.1706473803969,21.2587672251562,17.930320258069,40.6920853896942,25.3973954417432,36.2180090275045,36.3656439851417,13.0474232852686,36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| ||
|EntrezGene=234388 | |||
|HGNC= | |||
|MCL_coexpression_id=1420 | |||
|UniProt=Q9D8X2 | |||
|association_with_transcript=0bp_to_ENSMUST00000007865,NM_026964,uc009mby.1_5end | |||
|description=CAGE_peak_1_at_Ccdc124_5end | |||
|id=chr8:73397376..73397400,- | |||
|ontology_enrichment_celltype=CL:0002319!6.47e-14!43;CL:0000548!1.22e-13!115;CL:0000004!1.22e-13!115;CL:0000255!1.22e-13!115;CL:0002371!3.94e-13!118;CL:0000221!6.67e-13!44;CL:0000133!6.67e-13!44;CL:0002321!1.15e-12!70;CL:0000220!1.15e-12!70;CL:0000117!2.84e-12!23;CL:0000337!2.84e-12!23;CL:0000144!2.73e-11!121;CL:0000012!2.73e-11!121;CL:0000055!3.84e-11!50;CL:0000540!3.14e-09!33;CL:0000047!3.14e-09!33;CL:0000031!3.14e-09!33;CL:0000404!3.14e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.47e-14,43;CL:0000221,6.67e-13,44;CL:0000133,6.67e-13,44;CL:0002321,1.15e-12,70;CL:0000117,2.84e-12,23;CL:0000337,2.84e-12,23;CL:0000540,3.14e-09,33;CL:0000047,3.14e-09,33;CL:0000031,3.14e-09,33;CL:0000404,3.14e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.80e-19!75;UBERON:0001016!1.80e-19!75;UBERON:0001017!5.18e-19!73;UBERON:0005743!5.18e-19!73;UBERON:0002020!2.51e-17!34;UBERON:0001049!2.87e-15!52;UBERON:0005068!2.87e-15!52;UBERON:0006241!2.87e-15!52;UBERON:0007135!2.87e-15!52;UBERON:0002791!8.63e-15!29;UBERON:0003528!8.63e-15!29;UBERON:0001893!8.63e-15!29;UBERON:0000955!3.65e-14!50;UBERON:0006238!3.65e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0004121!2.12e-11!102;UBERON:0000924!2.12e-11!102;UBERON:0006601!2.12e-11!102;UBERON:0003080!1.47e-10!40;UBERON:0002780!1.89e-10!39;UBERON:0001890!1.89e-10!39;UBERON:0006240!1.89e-10!39;UBERON:0002619!5.37e-10!17;UBERON:0000033!8.51e-10!63;UBERON:0002346!7.41e-09!71;UBERON:0003075!7.41e-09!71;UBERON:0007284!7.41e-09!71;UBERON:0003056!6.44e-08!49;UBERON:0002021!4.47e-07!10;UBERON:0000411!4.47e-07!10;UBERON:0001950!4.47e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-19,75;UBERON:0001017,5.18e-19,73;UBERON:0002020,2.51e-17,34;UBERON:0000073,2.67e-16,54;UBERON:0001049,2.87e-15,52;UBERON:0005068,2.87e-15,52;UBERON:0006241,2.87e-15,52;UBERON:0007135,2.87e-15,52;UBERON:0003528,8.63e-15,29;UBERON:0002791,8.63e-15,29;UBERON:0001893,8.63e-15,29;UBERON:0004121,2.66e-14,95;UBERON:0000924,2.66e-14,95;UBERON:0006601,2.66e-14,95;UBERON:0000955,8.43e-13,47;UBERON:0006238,8.43e-13,47;UBERON:0002616,1.83e-12,46;UBERON:0002346,5.43e-12,64;UBERON:0003075,5.43e-12,64;UBERON:0007284,5.43e-12,64;UBERON:0000956,2.03e-11,21;UBERON:0001869,2.03e-11,21;UBERON:0000203,2.03e-11,21;UBERON:0003080,1.47e-10,40;UBERON:0002780,1.89e-10,39;UBERON:0001890,1.89e-10,39;UBERON:0006240,1.89e-10,39;UBERON:0002619,5.37e-10,17;UBERON:0010371,1.65e-09,73;UBERON:0010314,1.78e-08,92;UBERON:0003056,6.44e-08,49;UBERON:0002021,4.47e-07,10;UBERON:0000411,4.47e-07,10;UBERON:0001950,4.47e-07,10 | |||
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| |||
|short_description=p1@Ccdc124 | |||
}} |
Revision as of 16:00, 14 September 2013
Short description: | p1@Ccdc124 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ccdc124_5end |
Coexpression cluster: | MCL_coexpression_mm9:1420 |
Association with transcript: | 0bp_to_ENSMUST00000007865, NM_026964, uc009mby.1_5end |
EntrezGene: | Ccdc124 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.47e-14 | 43 |
ectodermal cell | 6.67e-13 | 44 |
neurectodermal cell | 6.67e-13 | 44 |
embryonic cell | 1.15e-12 | 70 |
CNS neuron (sensu Vertebrata) | 2.84e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.84e-12 | 23 |
neuron | 3.14e-09 | 33 |
neuronal stem cell | 3.14e-09 | 33 |
neuroblast | 3.14e-09 | 33 |
electrically signaling cell | 3.14e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.80e-19 | 75 |
central nervous system | 5.18e-19 | 73 |
gray matter | 2.51e-17 | 34 |
regional part of nervous system | 2.67e-16 | 54 |
neural tube | 2.87e-15 | 52 |
neural rod | 2.87e-15 | 52 |
future spinal cord | 2.87e-15 | 52 |
neural keel | 2.87e-15 | 52 |
brain grey matter | 8.63e-15 | 29 |
regional part of telencephalon | 8.63e-15 | 29 |
telencephalon | 8.63e-15 | 29 |
ectoderm-derived structure | 2.66e-14 | 95 |
ectoderm | 2.66e-14 | 95 |
presumptive ectoderm | 2.66e-14 | 95 |
brain | 8.43e-13 | 47 |
future brain | 8.43e-13 | 47 |
regional part of brain | 1.83e-12 | 46 |
neurectoderm | 5.43e-12 | 64 |
neural plate | 5.43e-12 | 64 |
presumptive neural plate | 5.43e-12 | 64 |
cerebral cortex | 2.03e-11 | 21 |
cerebral hemisphere | 2.03e-11 | 21 |
pallium | 2.03e-11 | 21 |
anterior neural tube | 1.47e-10 | 40 |
regional part of forebrain | 1.89e-10 | 39 |
forebrain | 1.89e-10 | 39 |
future forebrain | 1.89e-10 | 39 |
regional part of cerebral cortex | 5.37e-10 | 17 |
ecto-epithelium | 1.65e-09 | 73 |
structure with developmental contribution from neural crest | 1.78e-08 | 92 |
pre-chordal neural plate | 6.44e-08 | 49 |
occipital lobe | 4.47e-07 | 10 |
visual cortex | 4.47e-07 | 10 |
neocortex | 4.47e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.