FFCP PHASE1:Mm9::chr9:58100982..58101079,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69106|HGNC=|MCL_coexpression_id=347|UniProt=Q8CI66,Q3UFS9|association_with_transcript=11bp_to_ENSMUST00000034883,NM_026942,NR_028146,uc009pws.2,uc009pwt.2_5end|description=CAGE_peak_1_at_Stoml1_5end|id=chr9:58100982..58101079,+|ontology_enrichment_celltype=CL:0000055!3.12e-15!50;CL:0000117!1.76e-14!23;CL:0000337!1.76e-14!23;CL:0000221!6.13e-14!44;CL:0000133!6.13e-14!44;CL:0002319!1.21e-13!43;CL:0000393!2.07e-12!39;CL:0000211!2.07e-12!39;CL:0002321!1.20e-10!70;CL:0000220!1.20e-10!70;CL:0000540!2.00e-10!33;CL:0000047!2.00e-10!33;CL:0000031!2.00e-10!33;CL:0000404!2.00e-10!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.76e-14,23;CL:0000337,1.76e-14,23;CL:0000221,6.13e-14,44;CL:0000133,6.13e-14,44;CL:0002319,1.21e-13,43;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0002321,1.20e-10,70;CL:0000540,2.00e-10,33;CL:0000047,2.00e-10,33;CL:0000031,2.00e-10,33;CL:0000404,2.00e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.75e-28!75;UBERON:0001016!1.75e-28!75;UBERON:0001017!6.74e-28!73;UBERON:0005743!6.74e-28!73;UBERON:0001049!2.94e-26!52;UBERON:0005068!2.94e-26!52;UBERON:0006241!2.94e-26!52;UBERON:0007135!2.94e-26!52;UBERON:0000955!2.15e-24!50;UBERON:0006238!2.15e-24!50;UBERON:0002616!5.32e-24!49;UBERON:0000033!9.47e-23!63;UBERON:0002346!3.19e-22!71;UBERON:0003075!3.19e-22!71;UBERON:0007284!3.19e-22!71;UBERON:0004121!3.70e-22!102;UBERON:0000924!3.70e-22!102;UBERON:0006601!3.70e-22!102;UBERON:0002020!2.58e-20!34;UBERON:0003080!1.49e-19!40;UBERON:0002780!5.08e-19!39;UBERON:0001890!5.08e-19!39;UBERON:0006240!5.08e-19!39;UBERON:0003056!1.04e-17!49;UBERON:0007811!1.15e-17!86;UBERON:0002791!9.83e-17!29;UBERON:0003528!9.83e-17!29;UBERON:0001893!9.83e-17!29;UBERON:0000153!6.44e-15!94;UBERON:0000956!5.79e-12!21;UBERON:0001869!5.79e-12!21;UBERON:0000203!5.79e-12!21;UBERON:0002619!2.43e-10!17;UBERON:0004111!7.22e-08!122;UBERON:0000025!2.72e-07!114;UBERON:0003076!3.18e-07!12;UBERON:0003057!3.18e-07!12;UBERON:0002021!3.59e-07!10;UBERON:0000411!3.59e-07!10;UBERON:0001950!3.59e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.75e-28,75;UBERON:0001017,6.74e-28,73;UBERON:0000073,8.39e-28,54;UBERON:0001049,2.94e-26,52;UBERON:0005068,2.94e-26,52;UBERON:0006241,2.94e-26,52;UBERON:0007135,2.94e-26,52;UBERON:0002346,8.07e-23,64;UBERON:0003075,8.07e-23,64;UBERON:0007284,8.07e-23,64;UBERON:0000955,2.04e-22,47;UBERON:0006238,2.04e-22,47;UBERON:0004121,3.64e-22,95;UBERON:0000924,3.64e-22,95;UBERON:0006601,3.64e-22,95;UBERON:0002616,4.96e-22,46;UBERON:0002020,2.58e-20,34;UBERON:0003080,1.49e-19,40;UBERON:0002780,5.08e-19,39;UBERON:0001890,5.08e-19,39;UBERON:0006240,5.08e-19,39;UBERON:0010371,1.33e-18,73;UBERON:0010314,3.33e-18,92;UBERON:0003056,1.04e-17,49;UBERON:0003528,9.83e-17,29;UBERON:0002791,9.83e-17,29;UBERON:0001893,9.83e-17,29;UBERON:0000956,5.79e-12,21;UBERON:0001869,5.79e-12,21;UBERON:0000203,5.79e-12,21;UBERON:0002619,2.43e-10,17;UBERON:0004111,7.22e-08,122;UBERON:0000025,2.72e-07,114;UBERON:0003076,3.18e-07,12;UBERON:0003057,3.18e-07,12;UBERON:0002021,3.59e-07,10;UBERON:0000411,3.59e-07,10;UBERON:0001950,3.59e-07,10|phase1_expression=15.3742893220602,5.93258192986914,9.09998478779072,6.65421264875026,9.5170188689806,5.54001597309236,4.67225281191051,9.8133725815598,1.267098499365,2.10658073689794,3.25314139628459,2.39316476986009,9.0736386863539,6.38168937658681,2.99798785634096,3.84703008040669,3.49780939064073,7.25562980323947,10.8320402548534,4.2438965179803,9.60989178707088,3.47518329203099,4.96279599363977,7.35965144849671,6.65286915094793,3.44539178469012,7.32295393470427,6.03319451520489,11.2113817479261,6.5527833737582,7.98229838359097,1.90509202037889,2.46025915033828,0,6.06588401477677,4.15586613396231,3.67504841272264,8.37063261473815,7.0320181007142,6.28228492768558,4.1176204162171,7.5135003345429,8.73918635456076,15.8629990649227,16.3216859263418,17.4369414553597,27.3836970521814,16.3518867285335,21.7489320907127,16.5265414213141,13.9986421625363,5.75010257459886,3.85899993932794,6.5282592781021,5.37750078627942,9.51859913333004,12.0344044774278,11.8604581223812,26.5034563726073,22.7466121086974,28.5224131577781,17.2810711355257,10.6715375533337,12.5985960419396,15.8218618010716,12.7886420690298,20.0732074047331,28.8163728991166,13.4796496001021,19.0358373047684,14.9330722559481,34.849420097264,36.4433092570162,17.3936934885235,16.5812664861549,22.9804696652505,26.4278114398533,29.240400421508,26.2667171868176,27.6961204233407,29.4590212399759,27.0874952689515,32.1060448851588,41.0816705323126,28.2676758387099,33.5876587439981,30.7522830526062,30.7559085611746,11.8890123533099,9.59758813356176,13.6236309689789,6.0229671388697,2.03991400112325,1.07940638327563,4.54843492213368,1.79210754838934,6.17955448579708,13.2935651610885,14.2882302531578,16.2536204274756,11.5491604216878,28.2318250311499,12.7402619853323,14.2213340630666,6.49473123033642,8.10751569520315,7.07734223020697,3.08296475241462,5.17875767294343,5.49235914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| ||
|EntrezGene=69106 | |||
|HGNC= | |||
|MCL_coexpression_id=347 | |||
|UniProt=Q8CI66,Q3UFS9 | |||
|association_with_transcript=11bp_to_ENSMUST00000034883,NM_026942,NR_028146,uc009pws.2,uc009pwt.2_5end | |||
|description=CAGE_peak_1_at_Stoml1_5end | |||
|id=chr9:58100982..58101079,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.12e-15!50;CL:0000117!1.76e-14!23;CL:0000337!1.76e-14!23;CL:0000221!6.13e-14!44;CL:0000133!6.13e-14!44;CL:0002319!1.21e-13!43;CL:0000393!2.07e-12!39;CL:0000211!2.07e-12!39;CL:0002321!1.20e-10!70;CL:0000220!1.20e-10!70;CL:0000540!2.00e-10!33;CL:0000047!2.00e-10!33;CL:0000031!2.00e-10!33;CL:0000404!2.00e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.76e-14,23;CL:0000337,1.76e-14,23;CL:0000221,6.13e-14,44;CL:0000133,6.13e-14,44;CL:0002319,1.21e-13,43;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0002321,1.20e-10,70;CL:0000540,2.00e-10,33;CL:0000047,2.00e-10,33;CL:0000031,2.00e-10,33;CL:0000404,2.00e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.75e-28!75;UBERON:0001016!1.75e-28!75;UBERON:0001017!6.74e-28!73;UBERON:0005743!6.74e-28!73;UBERON:0001049!2.94e-26!52;UBERON:0005068!2.94e-26!52;UBERON:0006241!2.94e-26!52;UBERON:0007135!2.94e-26!52;UBERON:0000955!2.15e-24!50;UBERON:0006238!2.15e-24!50;UBERON:0002616!5.32e-24!49;UBERON:0000033!9.47e-23!63;UBERON:0002346!3.19e-22!71;UBERON:0003075!3.19e-22!71;UBERON:0007284!3.19e-22!71;UBERON:0004121!3.70e-22!102;UBERON:0000924!3.70e-22!102;UBERON:0006601!3.70e-22!102;UBERON:0002020!2.58e-20!34;UBERON:0003080!1.49e-19!40;UBERON:0002780!5.08e-19!39;UBERON:0001890!5.08e-19!39;UBERON:0006240!5.08e-19!39;UBERON:0003056!1.04e-17!49;UBERON:0007811!1.15e-17!86;UBERON:0002791!9.83e-17!29;UBERON:0003528!9.83e-17!29;UBERON:0001893!9.83e-17!29;UBERON:0000153!6.44e-15!94;UBERON:0000956!5.79e-12!21;UBERON:0001869!5.79e-12!21;UBERON:0000203!5.79e-12!21;UBERON:0002619!2.43e-10!17;UBERON:0004111!7.22e-08!122;UBERON:0000025!2.72e-07!114;UBERON:0003076!3.18e-07!12;UBERON:0003057!3.18e-07!12;UBERON:0002021!3.59e-07!10;UBERON:0000411!3.59e-07!10;UBERON:0001950!3.59e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.75e-28,75;UBERON:0001017,6.74e-28,73;UBERON:0000073,8.39e-28,54;UBERON:0001049,2.94e-26,52;UBERON:0005068,2.94e-26,52;UBERON:0006241,2.94e-26,52;UBERON:0007135,2.94e-26,52;UBERON:0002346,8.07e-23,64;UBERON:0003075,8.07e-23,64;UBERON:0007284,8.07e-23,64;UBERON:0000955,2.04e-22,47;UBERON:0006238,2.04e-22,47;UBERON:0004121,3.64e-22,95;UBERON:0000924,3.64e-22,95;UBERON:0006601,3.64e-22,95;UBERON:0002616,4.96e-22,46;UBERON:0002020,2.58e-20,34;UBERON:0003080,1.49e-19,40;UBERON:0002780,5.08e-19,39;UBERON:0001890,5.08e-19,39;UBERON:0006240,5.08e-19,39;UBERON:0010371,1.33e-18,73;UBERON:0010314,3.33e-18,92;UBERON:0003056,1.04e-17,49;UBERON:0003528,9.83e-17,29;UBERON:0002791,9.83e-17,29;UBERON:0001893,9.83e-17,29;UBERON:0000956,5.79e-12,21;UBERON:0001869,5.79e-12,21;UBERON:0000203,5.79e-12,21;UBERON:0002619,2.43e-10,17;UBERON:0004111,7.22e-08,122;UBERON:0000025,2.72e-07,114;UBERON:0003076,3.18e-07,12;UBERON:0003057,3.18e-07,12;UBERON:0002021,3.59e-07,10;UBERON:0000411,3.59e-07,10;UBERON:0001950,3.59e-07,10 | |||
|phase1_expression=15.3742893220602,5.93258192986914,9.09998478779072,6.65421264875026,9.5170188689806,5.54001597309236,4.67225281191051,9.8133725815598,1.267098499365,2.10658073689794,3.25314139628459,2.39316476986009,9.0736386863539,6.38168937658681,2.99798785634096,3.84703008040669,3.49780939064073,7.25562980323947,10.8320402548534,4.2438965179803,9.60989178707088,3.47518329203099,4.96279599363977,7.35965144849671,6.65286915094793,3.44539178469012,7.32295393470427,6.03319451520489,11.2113817479261,6.5527833737582,7.98229838359097,1.90509202037889,2.46025915033828,0,6.06588401477677,4.15586613396231,3.67504841272264,8.37063261473815,7.0320181007142,6.28228492768558,4.1176204162171,7.5135003345429,8.73918635456076,15.8629990649227,16.3216859263418,17.4369414553597,27.3836970521814,16.3518867285335,21.7489320907127,16.5265414213141,13.9986421625363,5.75010257459886,3.85899993932794,6.5282592781021,5.37750078627942,9.51859913333004,12.0344044774278,11.8604581223812,26.5034563726073,22.7466121086974,28.5224131577781,17.2810711355257,10.6715375533337,12.5985960419396,15.8218618010716,12.7886420690298,20.0732074047331,28.8163728991166,13.4796496001021,19.0358373047684,14.9330722559481,34.849420097264,36.4433092570162,17.3936934885235,16.5812664861549,22.9804696652505,26.4278114398533,29.240400421508,26.2667171868176,27.6961204233407,29.4590212399759,27.0874952689515,32.1060448851588,41.0816705323126,28.2676758387099,33.5876587439981,30.7522830526062,30.7559085611746,11.8890123533099,9.59758813356176,13.6236309689789,6.0229671388697,2.03991400112325,1.07940638327563,4.54843492213368,1.79210754838934,6.17955448579708,13.2935651610885,14.2882302531578,16.2536204274756,11.5491604216878,28.2318250311499,12.7402619853323,14.2213340630666,6.49473123033642,8.10751569520315,7.07734223020697,3.08296475241462,5.17875767294343,5.49235914539852,8.84775166507293,8.52503339273995,8.99400439298628,8.89263579260473,7.17291113527799,7.91699525376955,5.93267922562497,4.62717942143717,4.42305275974937,4.69123864847487,4.63767188766826,7.75800405016355,1.86391761218122,8.19786231632332,17.3840766655168,6.64188343542338,5.27186547826049,4.19931911695385,3.93917703926501,20.6711082378655,14.1825186873774,20.8586224507355,22.9448102653805,23.0143911597297,19.1165000994795,20.2801578834697,11.5078481150857,4.60305791257344,6.31806896084187,6.31325567659422,5.85541993332167,10.5754968039398,6.48223667299257,9.64510834148576,7.89223390155403,7.81493693737584,9.93238280333126,6.98499100995342,3.66465587985832,3.9712276835242,8.2697028357056,7.45265490253754,5.28289773528636,8.00979983000983,4.93877127379064,5.7719937377363,4.91549231119264,5.1469581422943,5.11494298912067,7.66365358381357,6.0976775595085,6.12211008967451,6.15536312521547,5.70616272067471,6.32495162838251,4.88321283975857,8.31647544338819,5.3712057488898,5.26591519723137,6.40253109908471,6.24229833503089,8.77199924551994,6.58650345873152,5.90508242545636,22.7113144449257,18.8315440654091,8.26046957459495,3.96675849995316,4.47905326123991,5.10920678092965,3.8660238396628,3.02525286935014,4.00280478920767,5.1360919050391,3.79623249235609,4.28217282282428,6.78605063760728,7.95825888164603,5.06906626509712,7.19055526923377,5.40345124686736,5.97423819763102,7.2073802362171,7.19765629441292,3.38123207019241,7.53509913027663,5.81857461502877,7.43439690837377,8.28398636327771,5.01874503130647,6.59394656933774,6.04646103216823,2.66807364378434,2.00214126859313,1.96558995113203,2.47348323623339,3.04290182082754,3.37648023653384,1.78238096246994,2.30156909960649,4.70192157647603,2.47105271869273,4.31304619582064,2.60498663367952,4.68056509671841,3.28352541331245,3.04975602987251,1.92977408545347,10.1614254591633,9.09558776498327,4.72598431681875,5.09235257325564,6.33663670378956,6.19773152534718,6.18913466303636,8.78101415360095,7.72412206120336,9.52298165489732,7.97273843287435,8.1931657357869,8.63424909329478,10.8486793936134,15.0791283939272,15.2293591469239,4.42587845717133,5.51873492609465,19.266070798535,17.4645413022383,2.62295912602681,6.81671503451807,8.20321370482267,3.12350995437311,6.89354872744957,5.73525115086125,6.01556420022464,9.05844898524264,5.26253912177363,10.2289550268959,5.92931666919785,13.8168166061377,4.9679029822894,11.0400674273698,10.4247653986289,8.74341651754438,1.32745138339963,5.09839335925461,6.34879469625977,5.84675747243284,5.02013217897314,4.91896236710284,4.39328098385976,9.81541069589265,5.70395805415554,4.42451461110142,3.16255825724996,4.12542172992747,7.48967132658334,9.36317688962813,10.3486947026204,11.3598628566744,10.995094485821,11.4156043265325,13.657568709976,13.0919928119278,3.98941903708308,7.20229040936989,6.17479514553893,6.92522262354216,5.00539722757307,4.22190474497091,4.8942661041286,3.44695889464629,6.12109756922687,17.2445530869774,5.12612642393558,8.2554747185289,5.55583582109135,2.63715839806567,4.51090951479383,4.57556346413045,4.07948231985253,6.15786390224095,6.08079884739465,5.72802370809068,4.74503990371703,5.082986678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| |||
|short_description=p1@Stoml1 | |||
}} |
Revision as of 18:22, 14 September 2013
Short description: | p1@Stoml1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stoml1_5end |
Coexpression cluster: | MCL_coexpression_mm9:347 |
Association with transcript: | 11bp_to_ENSMUST00000034883, NM_026942, NR_028146, uc009pws.2, uc009pwt.2_5end |
EntrezGene: | Stoml1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.76e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.76e-14 | 23 |
ectodermal cell | 6.13e-14 | 44 |
neurectodermal cell | 6.13e-14 | 44 |
neural cell | 1.21e-13 | 43 |
electrically responsive cell | 2.07e-12 | 39 |
electrically active cell | 2.07e-12 | 39 |
embryonic cell | 1.20e-10 | 70 |
neuron | 2.00e-10 | 33 |
neuronal stem cell | 2.00e-10 | 33 |
neuroblast | 2.00e-10 | 33 |
electrically signaling cell | 2.00e-10 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.