FFCP PHASE1:Mm9::chrX:8469502..8469549,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=102941|HGNC=|MCL_coexpression_id=159|UniProt=Q7TNS5|association_with_transcript=23bp_to_ENSMUST00000064196,NR_045448,uc009spi.2_5end|description=CAGE_peak_1_at_B630019K06Rik_5end|id=chrX:8469502..8469549,+|ontology_enrichment_celltype=CL:0000540!2.54e-15!33;CL:0000047!2.54e-15!33;CL:0000031!2.54e-15!33;CL:0000404!2.54e-15!33;CL:0000117!3.02e-15!23;CL:0000337!3.02e-15!23;CL:0002319!1.57e-13!43;CL:0000221!1.67e-13!44;CL:0000133!1.67e-13!44;CL:0000393!8.92e-13!39;CL:0000211!8.92e-13!39;CL:0000055!7.35e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.23e-16,33;CL:0000047,6.23e-16,33;CL:0000031,6.23e-16,33;CL:0000404,6.23e-16,33;CL:0000117,7.46e-16,23;CL:0000337,7.46e-16,23;CL:0002319,8.45e-14,43;CL:0000221,8.98e-14,44;CL:0000133,8.98e-14,44;CL:0000393,3.44e-13,39;CL:0000211,3.44e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.11e-30!73;UBERON:0005743!1.11e-30!73;UBERON:0000073!1.11e-29!75;UBERON:0001016!1.11e-29!75;UBERON:0002346!1.64e-28!71;UBERON:0003075!1.64e-28!71;UBERON:0007284!1.64e-28!71;UBERON:0004121!7.11e-27!102;UBERON:0000924!7.11e-27!102;UBERON:0006601!7.11e-27!102;UBERON:0001049!3.88e-25!52;UBERON:0005068!3.88e-25!52;UBERON:0006241!3.88e-25!52;UBERON:0007135!3.88e-25!52;UBERON:0000033!5.29e-24!63;UBERON:0000955!2.23e-23!50;UBERON:0006238!2.23e-23!50;UBERON:0002616!6.93e-23!49;UBERON:0003056!3.73e-20!49;UBERON:0003080!5.02e-19!40;UBERON:0002780!2.34e-18!39;UBERON:0001890!2.34e-18!39;UBERON:0006240!2.34e-18!39;UBERON:0002020!1.98e-16!34;UBERON:0002791!4.41e-13!29;UBERON:0003528!4.41e-13!29;UBERON:0001893!4.41e-13!29;UBERON:0000153!5.21e-11!94;UBERON:0007811!1.84e-10!86;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21;UBERON:0002619!9.99e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-31,73;UBERON:0001016,1.29e-30,75;UBERON:0002346,2.87e-28,64;UBERON:0003075,2.87e-28,64;UBERON:0007284,2.87e-28,64;UBERON:0000073,1.11e-27,54;UBERON:0001049,3.46e-26,52;UBERON:0005068,3.46e-26,52;UBERON:0006241,3.46e-26,52;UBERON:0007135,3.46e-26,52;UBERON:0004121,1.20e-24,95;UBERON:0000924,1.20e-24,95;UBERON:0006601,1.20e-24,95;UBERON:0000955,3.06e-22,47;UBERON:0006238,3.06e-22,47;UBERON:0010371,5.67e-22,73;UBERON:0002616,9.77e-22,46;UBERON:0003056,5.57e-21,49;UBERON:0003080,8.41e-20,40;UBERON:0002780,4.20e-19,39;UBERON:0001890,4.20e-19,39;UBERON:0006240,4.20e-19,39;UBERON:0002020,4.33e-17,34;UBERON:0010314,1.15e-16,92;UBERON:0003528,1.36e-13,29;UBERON:0002791,1.36e-13,29;UBERON:0001893,1.36e-13,29;UBERON:0000956,1.43e-08,21;UBERON:0001869,1.43e-08,21;UBERON:0000203,1.43e-08,21;UBERON:0002619,5.87e-07,17;UBERON:0003076,6.53e-07,12;UBERON:0003057,6.53e-07,12|phase1_expression=5.60520964866779,0,0,0.30246421130683,0,1.34303417529512,1.40167584357315,2.7115897922731,1.267098499365,2.34064526321993,0.513653904676515,0.478632953972018,2.22560948910567,2.09808965805594,0,0,0,0.315462165358238,0.411343300817216,0,4.67738095830884,0.297872853602656,0.261199789138935,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.570070258369122,0.504060259519861,0.665191531965914,0,0,0,0.577703239502549,0.498703936075477,0.816677425049476,0,0,0,0,0,0,4.02869817521847,3.54819259268301,2.38610777810186,3.9119567217402,2.39827672018491,3.95435128922049,2.3331587888914,0.839918529752175,4.31257693094915,0,3.62681071005672,1.34437519656986,0.257259436035947,0.573066879877513,1.03134418455488,54.827760892951,56.0730438028355,65.9184659646426,1.69422266034566,2.66788438833342,0.449949858640699,1.97773272513395,0,2.99600110518405,4.2264013585371,7.15458324928496,12.5555522648472,7.15104868594699,60.8436596780102,52.1249756645808,22.6607978547665,19.3607851456837,32.1726575313507,53.9567816897005,25.4097802789524,34.5614699826548,49.0616990356321,38.4248103130121,40.6312429034273,45.5068288372251,61.9038871034848,49.048237536356,51.2653738724182,40.7183007085434,52.5646437227348,1.13589289999776,1.43585964202892,2.31891590961342,0,3.39985666853875,1.07940638327563,0,0.448026887097336,1.40444420131752,1.36344258062446,1.03914401841148,2.47337702157238,3.09855523508697,0,0,0,2.59789249213457,1.01343946190039,0,1.25602267690966,0,5.04703272820404,5.03107447621794,4.87144765299426,4.38169444786511,3.76806601381556,4.8211369925639,2.89033160058254,0.741584903203122,0.722996784599558,0.884610551949874,1.13236794963186,1.10420759230197,0,1.86391761218122,8.19786231632332,7.12118803165747,0.510914110417183,1.55759661857696,0.599902730993408,0.635351135365324,42.0911696727552,17.8425235099264,33.6753663662477,7.64827008846016,7.41574826257959,38.0252121543995,24.1739481970959,3.36069900706044,1.36847667671102,2.0217820674694,2.94618598241064,3.3831315170303,8.04657365517155,6.12211241338187,3.61691562805716,4.42237244483631,3.20284300712124,4.02917415606834,5.69147415625834,8.191583731448,6.80781888604149,5.80638709741031,4.82230611340665,3.89266148915837,2.089512999133,1.4404749548556,3.98068533636986,0,0.77204372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| ||
|EntrezGene=102941 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|UniProt=Q7TNS5 | |||
|association_with_transcript=23bp_to_ENSMUST00000064196,NR_045448,uc009spi.2_5end | |||
|description=CAGE_peak_1_at_B630019K06Rik_5end | |||
|id=chrX:8469502..8469549,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.54e-15!33;CL:0000047!2.54e-15!33;CL:0000031!2.54e-15!33;CL:0000404!2.54e-15!33;CL:0000117!3.02e-15!23;CL:0000337!3.02e-15!23;CL:0002319!1.57e-13!43;CL:0000221!1.67e-13!44;CL:0000133!1.67e-13!44;CL:0000393!8.92e-13!39;CL:0000211!8.92e-13!39;CL:0000055!7.35e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.23e-16,33;CL:0000047,6.23e-16,33;CL:0000031,6.23e-16,33;CL:0000404,6.23e-16,33;CL:0000117,7.46e-16,23;CL:0000337,7.46e-16,23;CL:0002319,8.45e-14,43;CL:0000221,8.98e-14,44;CL:0000133,8.98e-14,44;CL:0000393,3.44e-13,39;CL:0000211,3.44e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.11e-30!73;UBERON:0005743!1.11e-30!73;UBERON:0000073!1.11e-29!75;UBERON:0001016!1.11e-29!75;UBERON:0002346!1.64e-28!71;UBERON:0003075!1.64e-28!71;UBERON:0007284!1.64e-28!71;UBERON:0004121!7.11e-27!102;UBERON:0000924!7.11e-27!102;UBERON:0006601!7.11e-27!102;UBERON:0001049!3.88e-25!52;UBERON:0005068!3.88e-25!52;UBERON:0006241!3.88e-25!52;UBERON:0007135!3.88e-25!52;UBERON:0000033!5.29e-24!63;UBERON:0000955!2.23e-23!50;UBERON:0006238!2.23e-23!50;UBERON:0002616!6.93e-23!49;UBERON:0003056!3.73e-20!49;UBERON:0003080!5.02e-19!40;UBERON:0002780!2.34e-18!39;UBERON:0001890!2.34e-18!39;UBERON:0006240!2.34e-18!39;UBERON:0002020!1.98e-16!34;UBERON:0002791!4.41e-13!29;UBERON:0003528!4.41e-13!29;UBERON:0001893!4.41e-13!29;UBERON:0000153!5.21e-11!94;UBERON:0007811!1.84e-10!86;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21;UBERON:0002619!9.99e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-31,73;UBERON:0001016,1.29e-30,75;UBERON:0002346,2.87e-28,64;UBERON:0003075,2.87e-28,64;UBERON:0007284,2.87e-28,64;UBERON:0000073,1.11e-27,54;UBERON:0001049,3.46e-26,52;UBERON:0005068,3.46e-26,52;UBERON:0006241,3.46e-26,52;UBERON:0007135,3.46e-26,52;UBERON:0004121,1.20e-24,95;UBERON:0000924,1.20e-24,95;UBERON:0006601,1.20e-24,95;UBERON:0000955,3.06e-22,47;UBERON:0006238,3.06e-22,47;UBERON:0010371,5.67e-22,73;UBERON:0002616,9.77e-22,46;UBERON:0003056,5.57e-21,49;UBERON:0003080,8.41e-20,40;UBERON:0002780,4.20e-19,39;UBERON:0001890,4.20e-19,39;UBERON:0006240,4.20e-19,39;UBERON:0002020,4.33e-17,34;UBERON:0010314,1.15e-16,92;UBERON:0003528,1.36e-13,29;UBERON:0002791,1.36e-13,29;UBERON:0001893,1.36e-13,29;UBERON:0000956,1.43e-08,21;UBERON:0001869,1.43e-08,21;UBERON:0000203,1.43e-08,21;UBERON:0002619,5.87e-07,17;UBERON:0003076,6.53e-07,12;UBERON:0003057,6.53e-07,12 | |||
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| |||
|short_description=p1@B630019K06Rik | |||
}} |
Revision as of 20:14, 14 September 2013
Short description: | p1@B630019K06Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_B630019K06Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 23bp_to_ENSMUST00000064196, NR_045448, uc009spi.2_5end |
EntrezGene: | B630019K06Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.23e-16 | 33 |
neuronal stem cell | 6.23e-16 | 33 |
neuroblast | 6.23e-16 | 33 |
electrically signaling cell | 6.23e-16 | 33 |
CNS neuron (sensu Vertebrata) | 7.46e-16 | 23 |
neuroblast (sensu Vertebrata) | 7.46e-16 | 23 |
neural cell | 8.45e-14 | 43 |
ectodermal cell | 8.98e-14 | 44 |
neurectodermal cell | 8.98e-14 | 44 |
electrically responsive cell | 3.44e-13 | 39 |
electrically active cell | 3.44e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.19e-31 | 73 |
nervous system | 1.29e-30 | 75 |
neurectoderm | 2.87e-28 | 64 |
neural plate | 2.87e-28 | 64 |
presumptive neural plate | 2.87e-28 | 64 |
regional part of nervous system | 1.11e-27 | 54 |
neural tube | 3.46e-26 | 52 |
neural rod | 3.46e-26 | 52 |
future spinal cord | 3.46e-26 | 52 |
neural keel | 3.46e-26 | 52 |
ectoderm-derived structure | 1.20e-24 | 95 |
ectoderm | 1.20e-24 | 95 |
presumptive ectoderm | 1.20e-24 | 95 |
brain | 3.06e-22 | 47 |
future brain | 3.06e-22 | 47 |
ecto-epithelium | 5.67e-22 | 73 |
regional part of brain | 9.77e-22 | 46 |
pre-chordal neural plate | 5.57e-21 | 49 |
anterior neural tube | 8.41e-20 | 40 |
regional part of forebrain | 4.20e-19 | 39 |
forebrain | 4.20e-19 | 39 |
future forebrain | 4.20e-19 | 39 |
gray matter | 4.33e-17 | 34 |
structure with developmental contribution from neural crest | 1.15e-16 | 92 |
brain grey matter | 1.36e-13 | 29 |
regional part of telencephalon | 1.36e-13 | 29 |
telencephalon | 1.36e-13 | 29 |
cerebral cortex | 1.43e-08 | 21 |
cerebral hemisphere | 1.43e-08 | 21 |
pallium | 1.43e-08 | 21 |
regional part of cerebral cortex | 5.87e-07 | 17 |
posterior neural tube | 6.53e-07 | 12 |
chordal neural plate | 6.53e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.