FFCP PHASE1:Hg19::chr1:171711090..171711110,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12645 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=89bp_to_ENST00000474047_5end | |||
|description=CAGE_peak_4_at_VAMP4_5end | |||
|id=chr1:171711090..171711110,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.06e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.84e-24!94;UBERON:0001016!9.84e-24!94;UBERON:0001017!9.58e-23!82;UBERON:0001049!1.21e-22!57;UBERON:0005068!1.21e-22!57;UBERON:0006241!1.21e-22!57;UBERON:0007135!1.21e-22!57;UBERON:0005743!1.26e-22!86;UBERON:0002616!1.50e-19!59;UBERON:0000955!3.21e-19!69;UBERON:0006238!3.21e-19!69;UBERON:0003080!4.14e-19!42;UBERON:0002780!1.02e-18!41;UBERON:0001890!1.02e-18!41;UBERON:0006240!1.02e-18!41;UBERON:0007023!1.52e-18!115;UBERON:0001869!6.95e-17!32;UBERON:0003075!1.37e-16!86;UBERON:0007284!1.37e-16!86;UBERON:0002346!4.86e-16!90;UBERON:0002020!5.64e-16!34;UBERON:0003528!5.64e-16!34;UBERON:0001893!2.32e-15!34;UBERON:0002791!9.80e-15!33;UBERON:0002619!2.37e-14!22;UBERON:0003056!2.99e-14!61;UBERON:0000956!4.80e-14!25;UBERON:0000203!4.80e-14!25;UBERON:0001950!3.23e-13!20;UBERON:0000153!1.19e-11!129;UBERON:0007811!1.19e-11!129;UBERON:0004121!2.21e-11!169;UBERON:0000924!3.12e-11!173;UBERON:0006601!3.12e-11!173;UBERON:0000033!3.15e-10!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;8.60e-23;32!UBERON:0002619;1.32e-22;22!UBERON:0000956;1.75e-22;25!UBERON:0000203;1.75e-22;25!UBERON:0003528;2.19e-21;34!UBERON:0002020;2.19e-21;34!UBERON:0002791;4.72e-21;32!UBERON:0001893;1.43e-20;34!UBERON:0001950;1.63e-20;20!UBERON:0002780;1.29e-19;41!UBERON:0001890;1.29e-19;41!UBERON:0000073;2.58e-17;53!UBERON:0002616;2.58e-17;53!UBERON:0001017;1.22e-11;75!UBERON:0001016;1.75e-11;83!UBERON:0000955;2.94e-11;68!UBERON:0007023;1.27e-08;114!UBERON:0001871;5.08e-08;6!UBERON:0003135;1.06e-07;11!UBERON:0000473;3.57e-07;8!UBERON:0001872;5.55e-07;5!UBERON:0000349;7.30e-07;5!UBERON:0002021;9.96e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,8.62e-34,56;UBERON:0005068,8.62e-34,56;UBERON:0006241,8.62e-34,56;UBERON:0007135,8.62e-34,56;UBERON:0000073,6.67e-32,53;UBERON:0002616,6.67e-32,53;UBERON:0001016,8.31e-32,89;UBERON:0001017,2.46e-31,81;UBERON:0002780,3.27e-28,41;UBERON:0001890,3.27e-28,41;UBERON:0003080,3.27e-28,41;UBERON:0006240,3.27e-28,41;UBERON:0000955,2.11e-27,68;UBERON:0006238,2.11e-27,68;UBERON:0001869,2.10e-25,32;UBERON:0002346,4.71e-25,86;UBERON:0003528,6.46e-25,34;UBERON:0002020,6.46e-25,34;UBERON:0003075,1.02e-24,82;UBERON:0007284,1.02e-24,82;UBERON:0001893,2.74e-23,34;UBERON:0002791,3.25e-23,32;UBERON:0002619,1.15e-22,22;UBERON:0007023,1.51e-22,114;UBERON:0000956,2.28e-22,25;UBERON:0000203,2.28e-22,25;UBERON:0001950,1.16e-20,20;UBERON:0003056,4.45e-20,61;UBERON:0010371,2.10e-19,104;UBERON:0004121,5.39e-17,171;UBERON:0000924,5.39e-17,171;UBERON:0006601,5.39e-17,171;UBERON:0010314,4.41e-13,132;UBERON:0011216,2.91e-10,223;UBERON:0001871,6.13e-08,6;UBERON:0003135,7.14e-08,11;UBERON:0000473,1.57e-07,8;UBERON:0000025,3.01e-07,192;UBERON:0003076,4.89e-07,15;UBERON:0003057,4.89e-07,15;UBERON:0001872,5.13e-07,5;UBERON:0002021,5.52e-07,5;UBERON:0000349,9.48e-07,5 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,1.0007329835313,0.446961094427288,0.872338524100369,2.53299878168311,0,0,0.491467873003018,0,0.436882744260345,0.527533956456907,0.247532705920093,0,0,1.80808358407193,0,0.487932798790507,0.492484232307152,0.204000691244253,0.313454721478088,1.43117993565528,1.09499540058307,0.251085279189606,0.534893840235659,0.164201178899891,0.157421562627358,0.786728553697808,0,0.309632246632152,0,0.30120591877825,0.739508020333575,1.23947520928483,0.710846162437108,1.17440175733939,0.553995408531877,0.601633342410425,0.868043482863407,1.34349284543955,0.647787332037959,1.80302897343931,0.726991193897824,1.13362783106643,0.242584061187816,0.929716147622738,1.6446715520873,1.85823822537062,0.28769239232215,0,0.709446689665756,0.689491361473237,1.93645405075148,0,1.12945403725563,0.545812300115692,0.674170453335254,0.612167784741805,0.641858054152187,0.639337125799041,0.659702600373432,0.797854630486527,0.426224750532694,0.290209238628584,1.13477044938228,0.622822248995575,1.25624332628372,0,0.434377689410233,1.21079900526674,1.47311054395026,0.949387162322653,0.211255286311942,0.637812899895131,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0.800791974072025,0,0,0,0,0,0,3.96513985737078,5.60508562981536,1.05353633910031,0.196709770113833,0.393010762749165,0.411202997999018,2.17342444007882,0.651844533267181,0.473447805734733,0,1.44833593950726,0.883817722424512,0.221533894583621,0.270803863765016,1.79327847615945,1.30059347559878,0.986627427622057,0.829050053357545,1.15921234294021,0.741432815810302,0,0,1.13309342697566,0.766440987203842,0.68725489096526,0.759059076058509,0.637130828648193,0.651083453856419,0,0.602300476311091,0.639933055772092,0,0.473554504088034,0,0.604820229674197,0.534880391567015,0.579297615531196,0,1.34140171940727,0,0,0,1.44846518960824,0,0,1.22895262313288,1.10864698731282,0.614843499851882,0.785874452986276,0,0.370784442784429,0.324547393654683,0.696518949197069,0.664789802594326,0.238490624305342,1.71598473234038,1.11437250398869,0.198762407366705,0,0.694281003215189,0.56530794192401,0.419499436209906,0,0.417989933073621,1.03366703667732,0.71153252537342,1.00416183829401,0.402829317109147,0,0,0.367663080345869,0,1.07159673940896,1.57170560838319,0.675668882899933,0,0,0.366403487860815,0,0,0,0.496971951695318,0.379891534993739,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0.74000264525148,0.622422070799533,0.538842688278752,0.326923806226917,0.756787138224657,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.352303495931295,0.323745888736263,0.280901613404497,0.204154171254893,0.737005903870608,0.413303124703062,1.18800285728205,0,0,0.718618141816238,0.673344455816265,0.625592599359821,0,0,0,0.150238058906597,0.226864366320042,0.358779271377724,0.640672166455702,0.847727604638247,0,0.721367704669072,0.515281080091258,0.37223371266318,0.506328996723799,0.876933046450788,0,1.19664868234989,0.484938170456436,0,1.0075209822764,0.339121184620975,0.193260853163297,0,0,0.609868530647977,0.927708378250397,1.16193942869518,1.0366105501537,0.504641701751257,1.45990943630332,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0,0.217879444092406,0.237270619111097,0.269662616320329,0.588664395376038,0,0.738155454624648,1.40241773803446,0.8231480226628,0,0,0.982827216677626,0.590789906681404,0.882926198829301,0.614942192715568,0.343135620597051,0.219500570817251,0,0.201057944823262,0.740707561268237,0.651616610620649,0,0,1.27523445472584,0.587043471179108,0.288732895522148,0,0.380508304469197,0,0,1.23108503043699,0.702012795417713,0.148631162288728,0,0.503946384596579,0.141775097242386,1.43293636324557,0.581267877027924,0,2.46331618947972,0.968532774145487,0.829312462163088,1.15295962733569,0.6312121671319,0.126995788584338,0,2.34434894420094,0,0.205654985406647,0,0.285826432630578,0,0,0.36669142910475,0.258543431515556,0,0,1.06375246633948,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0.542621605391443,0.823240336780769,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0.179060963239896,1.00876629594175,0.394061520403854,0.431255149719035,0.128343036279748,0.254094624222463,2.60279707715243,1.54657762555539,1.67516265334349,1.27587750330633,0,0,0.414415513436035,0.613457458595699,0,0.271265023699736,1.87173775377726,0.178428988797162,0.157702415033935,0.35142424497814,0.300946099727719,2.27407504055985,2.0694614258501,0,0.184369168541703,1.04260337361699,0,0.343143423810856,0.206768026122887,0.647142602455851,0.320182673410333,0,0,0,0.744323423456331,0.460385919864187,0,0.512556597022804,0.511707249066704,0.482561763430822,0,0.308419387605311,0,0.492762936082855,0,0.464841513839837,1.32945394550784,0.802025881213139,0.276242966807689,0.114814448164607,0.364182336013434,0.393373244878272,0,0.539107359730903,0,0,1.16106791782163,1.13733384070897,0.170093705276516,0.863663664408557,1.54227252690289,0,0,0.509752546090077,0,0.447749509444357,0.438519753291869,0.522870902049801,0.256450125116389,0.328014645699706,0.976135183992909,0.206082023295445,0.640986253728404,0.495056999523528,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0.614014698904518,0,0.429680979473094,0.145016693914229,0.170453254832202,0.356128142586949,0.495854746082934,0.768760269460425,0.638063562472921,0.50578890427775,0.464845549297286,0,0.6970372701606,0,0,0.869932992075073,0,0.143124886741991,1.48863347743867,0,0.38126038784765,0.255897791311334,0.42793898803392,0,0.78494864019923,0.359744915166629,0,0.589062011728432,0,1.58510321173008,0,0,0.487426979262569,0,0.818999468447914,0.565621727814851,0,0,0,0.438450885253763,0.578775534266688,0,0.405820753925408,0.30982349809975,0,0.143411352204052,0.392996164052485,0.35667105148125,0,0.844430541190656,0.329294892959902,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,0.659006605437454,0.43050537267123,1.68471475667626,0,1.1486170010348,0,0.764637207142375,0.569647187174163,0.476463550915578,0,0,1.08006287447623,0.79312517629427,0.961416640147258,0,0.245040215981032,1.48642540100575,2.59684583357601,0.497992903438899,0.637705090915289,0.997896857164083,1.1490322207942,0.846694330895531,0.324621940274555,2.24637742490767,0.912938716132769,0.313359791546046,0,1.01575066680962,0.481764225311099,0.605399121573143,1.27753871307098,0.343505344755765,0.614481528616916,0.223676107892416,0.333698283423817,0.390776190804081,0.556812347790485,1.23087398947712,0.540911356951966,1.33228787199128,0,0,0.73254089635947,0.121360521749513,0.445773537109913,0,0,0.593929361665277,0,3.97659059106519,2.2507106625682,0.111308705022906,0.659215496907038,1.05562704063997,0.597743964753209,0.552567831062295,0.755798243562828,1.53403023753232,0.123084805461069,0.933118762985422,0.449341755736634,0,0,0.295930216910801,0,0,0,3.15411533750294,1.99613798001194,0,1.83665999992011,1.44999915086959,0.341380344856499,0.508507300585533,0.236387681767936,1.03423011972439,2.33283690706603,1.73624994933292,3.54296554325536,2.89431452700979,7.62908681585416,4.97606669690511,10.6397142823277,4.8264787373874,0.653630781113941,1.11538995422883,1.38510465306835,0.113942055847001,0.46112780877612,0.628303510868405,0.54323685961004,0,0.915975934018623,0.533034776018635,1.02193298195737,1.8837630767403,1.82832850090172,1.35357396370308,0.392125068635479,0.839107934879214,0.37950746544837,1.74830236878417,0,0.489698424477443,0.424059214301822,0.865554558968364,0,0.973033209536731,0,0.296521128680622,0,0,0.539209063845416,1.60515529459758,0.702793337176017,1.094728735294,0.391329237864179,0.728341138602278,1.18375320854817,1.20990716048664,1.53036380815245,1.64285107034069,0.751617097072463,0.414752765588989,0,0,0,0,0.284609546029793,0.138674673013139,0.173559738335131,0.195984794828755,0.174118413160805,2.09672001890436,0.51595809741485,0.290268993867255,0.365446585430928,0.328461828212837,0.581934098930517,0.264768380074501,0.451961481561065,0.274083849293502,0.19871461170299,5.19148526838205,0,0,2.34798294213288,0.599428828746391,0.144090417154106,0,1.37275998289572,0,0.124252535565433,0,0.271808412147228,0.836822770498666,0.305994652908965,1.44475294950759,0.600420288709789,0.821432273351958,1.27746588066972,0,0,0.279282401272254,1.14580212005842,0.717873024576814,0,0,0,1.07493555978762,0.360299883542404,0,0.236349546921671,0,0.202210631562555,0.0984274815147488,1.35477331305255,3.18091875923721,2.04305109167363,0.964518890790115,0.962776056180637,0.415440338029185,0.674921674654501,0,3.9487211827716,2.0126081255956,0.945668487590378,0.629455057619977,0.950403028674658,0.896436696664224,0,0.714695326373367,0.662091970365432,0.76280561296425,0,0,0.326587360109409,0,0.903017728242729,0.170388021785422,0.339936274560377,0,0,1.93924434542326,1.71902382265497,0.171086837884329,0.704815022316672,1.17466153824464,1.88645166119599,2.48543433208317,1.48849806543585,0.790446527591777,0.852548188666271,1.91502377331055,0,0.2506898940227,0,0,0.157054096250234,0.886068179966986,4.6369980662746,4.00610978260799,0.573409195690071,1.33114861844223,1.42821726765182,0.691743174681154,0.124980407962107,0.909894705249887,0,0.941063278792687,2.34167452903441,0.724605143054126,0.149254802886874,0.233713309847224,0,0.757612021100357,0.251567901752575,0.889811221596536,0,0.151230923763239,0.621748802331122,0.591420599958536,0.63718706865481,0.449803112163605,0.465788870628778,0,0.53168342911599,0,0.300515217994437,0,0.813741466409323,0.181848659202559,0.537052785212442,0.464033759878494,0,0,0,0,0,0.385239660814607,0.214441591374926,0.521988583930423,0.226705925512272,0,0.734210113519403,0.71635536432595,0.308801447160972,0.219284049578707,0,0,0.337884881306145,0.256241518587947,0,0.607719912354764,3.45646090379327,0,0.265729680626726,0.163565394255844,0.327609848846413,0.245772908753719,0.422624246717254,0.19998739585493,1.38699248602383,2.06657975592979,1.70254786070051,0.184105950251841,0.419638523158333,0,4.85998610953876,4.31299245586727,2.83078695340614,0.655257829152084,0,1.70059936081346,1.61116493536703,0.558644917973244,0.636008701306837,1.73495839002757,2.40171224485641,1.05802783107205,1.8374728641192,3.59683660540173,5.6678630530234,2.39450788585727,5.12790910601888,5.5455773168778,1.86724581653388,1.93770774758221,1.42769420259154,0.490738592505128,0.235939446695481,0.366857197043358,0.346576998451015,0.762764190934334,0,0.795664888465099,0.526472298444801,0.80682027481408,0,0.785720083444267,0.49131575253029,1.47856086217045,4.38994300019565,4.68646859168308,2.68692835451539,3.17079050969534,4.37579847214576,1.09651553371436,0,0,0.766574565837572,7.49982570229601,5.71682327772001,4.85572483389305,4.78090601837725,0.443511850813194,0.230467975111559,0.514464028312255,3.94224451265624,2.76245648963966,0,0.889851215136553,0.313972371402056,2.98519620840404,1.12108865325516,0.913158720509496,0.215927591218621,1.9110067515482,2.00134323694638,0.94808167039636,0.116241425368125,1.21700790611806,0,0.414432328326074,1.7071847709395,0,1.29068207646083,0.354996002191696,0.170426809518315,3.81048345171836,0.4582137370881,0,0.955538938977433,0.223710863595585,0.098150233615243,0,1.29485767437579,0.821302454849976,1.1598144313382,1.45713297917742,1.16969731731053,0.596852325484105,0,0.67767649223376,2.74851291863573,2.41540549706678,0.617393264863557,0.655678681511872,1.88126918544609,0,2.59244201811789,1.57046773691956,1.18818560130834,1.2679671827502,0.509781344063451,0.751871343838829,0.644578879735772,0.799529247399431,0.357107877211315,1.05868461514708,0.481448200135009,0.730336388246517,0.458729283404541,0,0.157771562193185,2.17572768610927,3.49080552272302,0.5290268405154,0.371995018166751,0.924351257262837,0,1.51399709802095,0.764859003745869,2.02717601618299,1.83579893535567,1.60330443159336,1.28652859348783,2.005660314339,1.28823786971007,1.33982065078089,1.65833887891756,1.34462894620464,0.852935927603924,2.85677317756488,1.55013383606415,1.36564371450887,0.112131862580613,1.0820016907288,1.0105859447911,0.870866991587845,0.684466602170562,0.471464371102113,0.573777643141411,1.99596213927608,0.407016343054873,0.106727345877715,5.7921684686082,0.628776414746108,0,1.22241444182866,1.62758471326295,0.665756774185513,1.00636896795513,0.641136984606466 | |||
|short_description=p4@VAMP4 | |||
}} |
Revision as of 22:16, 10 January 2014
Short description: | p4@VAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VAMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 89bp_to_ENST00000474047_5end |
EntrezGene: | VAMP4 |
HGNC: | 12645 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data