FFCP PHASE1:Hg19::chr11:19619645..19619656,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:19619645..19619656,+ | |||
|id=chr11:19619645..19619656,+ | |||
|ontology_enrichment_celltype=CL:0002541!6.50e-12!3;CL:0000515!9.90e-10!4;CL:0002600!5.80e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000515;1.72e-66;3!CL:0000056;4.01e-50;4!CL:0000680;4.88e-29;7!CL:0002321;5.76e-14;15!CL:0002262;2.74e-12;2!CL:1000398;2.74e-12;2!CL:0002600;2.74e-12;2!CL:0002592;8.31e-09;3!CL:0002586;1.26e-08;3!CL:0000149;8.85e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000515,4.37e-50,4;CL:0002262,2.07e-12,2;CL:1000398,2.07e-12,2;CL:0002600,2.59e-12,2;CL:0000680,9.86e-10,58;CL:0000056,9.86e-10,58;CL:0000355,9.86e-10,58;CL:0002592,8.31e-09,3;CL:0002586,1.12e-08,3;CL:0000149,8.14e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000515;4.01e-50;4!CL:0000355;5.09e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!6.50e-12!3;UBERON:0000920!6.50e-12!3;UBERON:0001737!8.45e-10!9;UBERON:0000020!5.39e-09!23;UBERON:0000019!1.28e-08!19;UBERON:0000047!1.28e-08!19;UBERON:0004088!1.28e-08!19;UBERON:0003072!1.28e-08!19;UBERON:0003071!1.28e-08!19;UBERON:0004128!1.28e-08!19;UBERON:0001032!1.45e-08!24;UBERON:0004456!1.45e-08!24;UBERON:0003124!1.68e-08!7;UBERON:0000970!3.88e-08!20;UBERON:0007625!4.21e-08!11;UBERON:0002104!1.06e-07!21;UBERON:0001456!1.06e-07!21;UBERON:0000966!1.67e-07!5;UBERON:0005388!1.67e-07!5;UBERON:0001802!1.67e-07!5;UBERON:0001444!4.04e-07!48;UBERON:0000063!7.01e-07!97;UBERON:0000914!8.54e-07!83;UBERON:0002329!8.54e-07!83;UBERON:0003077!8.54e-07!83;UBERON:0003059!8.54e-07!83;UBERON:0007282!8.54e-07!83;UBERON:0009618!8.54e-07!83;UBERON:0007285!8.54e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;3.89e-13;16!UBERON:0002036;3.89e-13;16!UBERON:0001281;2.74e-12;2!UBERON:0003497;2.74e-12;2!UBERON:0003909;2.74e-12;2!UBERON:0003835;2.74e-12;2!UBERON:0003498;8.31e-09;3!UBERON:0005985;8.31e-09;3!UBERON:0001621;8.31e-09;3!UBERON:0001781;1.26e-08;3!UBERON:0001782;1.26e-08;3!UBERON:0001280;1.26e-08;3!UBERON:0004647;1.26e-08;3!UBERON:0002385;6.01e-07;31!UBERON:0001015;6.01e-07;31!UBERON:0000383;6.01e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.07e-12,2;UBERON:0003497,2.07e-12,2;UBERON:0003909,2.07e-12,2;UBERON:0003835,2.07e-12,2;UBERON:0001134,4.11e-09,62;UBERON:0002036,4.11e-09,62;UBERON:0003082,4.11e-09,62;UBERON:0002385,7.84e-09,64;UBERON:0001015,7.84e-09,64;UBERON:0000383,7.84e-09,64;UBERON:0001621,8.31e-09,3;UBERON:0001280,1.04e-08,3;UBERON:0004647,1.04e-08,3;UBERON:0005171,1.04e-08,3;UBERON:0001782,1.12e-08,3;UBERON:0005424,1.12e-08,3;UBERON:0002329,5.68e-08,71;UBERON:0003059,5.68e-08,71;UBERON:0007282,5.68e-08,71;UBERON:0004290,5.68e-08,71;UBERON:0009618,5.68e-08,71;UBERON:0003077,7.31e-08,72;UBERON:0007285,7.31e-08,72;UBERON:0007524,9.34e-08,73;UBERON:0007503,2.90e-07,78;UBERON:0000486,7.87e-07,83;UBERON:0001781,8.14e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505008341862199,0.250237039743928,1.10825646193673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0.269662616320329,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30303176000821,4.31500277355805,5.01370697071708,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,1.31205858279882,0,0.103041011647722,0,0,0,0,0,0,0,0,0.275673144969061,0.107420244868274,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.34041284692033,0,0,0,0,0,0,0,0,0,0.438450885253763,0.578775534266688,1.31178950409327,0.202910376962704,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:19619645..19619656,+ | |||
}} |
Revision as of 06:54, 11 January 2014
Short description: | p@chr11:19619645..19619656, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:19619645..19619656, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle myoblast | 4.37e-50 | 4 |
endothelial cell of sinusoid | 2.07e-12 | 2 |
endothelial cell of hepatic sinusoid | 2.07e-12 | 2 |
smooth muscle cell of trachea | 2.59e-12 | 2 |
muscle precursor cell | 9.86e-10 | 58 |
myoblast | 9.86e-10 | 58 |
multi-potent skeletal muscle stem cell | 9.86e-10 | 58 |
smooth muscle cell of the coronary artery | 8.31e-09 | 3 |
retinal pigment epithelial cell | 1.12e-08 | 3 |
visual pigment cell | 8.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 2.07e-12 | 2 |
abdomen blood vessel | 2.07e-12 | 2 |
sinusoid | 2.07e-12 | 2 |
abdominal segment blood vessel | 2.07e-12 | 2 |
skeletal muscle tissue | 4.11e-09 | 62 |
striated muscle tissue | 4.11e-09 | 62 |
myotome | 4.11e-09 | 62 |
muscle tissue | 7.84e-09 | 64 |
musculature | 7.84e-09 | 64 |
musculature of body | 7.84e-09 | 64 |
coronary artery | 8.31e-09 | 3 |
liver parenchyma | 1.04e-08 | 3 |
liver lobule | 1.04e-08 | 3 |
hepatic duct | 1.04e-08 | 3 |
pigmented layer of retina | 1.12e-08 | 3 |
presumptive retinal pigmented epithelium | 1.12e-08 | 3 |
somite | 5.68e-08 | 71 |
presomitic mesoderm | 5.68e-08 | 71 |
presumptive segmental plate | 5.68e-08 | 71 |
dermomyotome | 5.68e-08 | 71 |
trunk paraxial mesoderm | 5.68e-08 | 71 |
paraxial mesoderm | 7.31e-08 | 72 |
presumptive paraxial mesoderm | 7.31e-08 | 72 |
dense mesenchyme tissue | 9.34e-08 | 73 |
epithelial vesicle | 2.90e-07 | 78 |
multilaminar epithelium | 7.87e-07 | 83 |
layer of retina | 8.14e-07 | 4 |