FFCP PHASE1:Hg19::chr2:241397690..241397720,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2817 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4449 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=86bp_to_ENST00000495100_5end | |||
|coexpression_cluster_id=C4209 | |||
|description=CAGE_peak_16_at_GPC1_5end | |||
|id=chr2:241397690..241397720,+ | |||
|ontology_enrichment_celltype=CL:0002541!2.65e-11!3;CL:0000349!3.15e-11!3;CL:0002577!3.15e-11!3;CL:0000066!5.93e-10!254;CL:0000039!3.33e-08!7;CL:0000586!3.33e-08!7;CL:0002536!1.41e-07!2;CL:1000415!1.72e-07!2;CL:0002537!3.71e-07!5;CL:0002076!7.71e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.39e-26;19!CL:0002537;9.25e-20;5!CL:0002541;4.93e-15;3!CL:0000039;2.77e-14;7!CL:0000586;2.77e-14;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.47e-26,19;CL:0002537,8.97e-20,5;CL:0002541,5.30e-15,3;CL:0000039,2.65e-14,7;CL:0000586,2.65e-14,7 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.93e-12;1!UBERON:0003124;1.32e-11;1 | |||
|ontology_enrichment_disease=DOID:305!1.96e-08!106;DOID:0050687!2.14e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:178;4.53e-12;1!DOID:326;4.53e-12;1!DOID:3978;4.53e-12;1!DOID:3394;4.53e-12;1!DOID:5844;4.53e-12;1!DOID:1799;8.64e-12;1!DOID:10165;8.64e-12;1!DOID:1798;8.64e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:178,4.53e-12,1;DOID:326,4.53e-12,1;DOID:3978,4.53e-12,1;DOID:3394,4.53e-12,1;DOID:5844,4.53e-12,1;DOID:1799,8.64e-12,1;DOID:10165,8.64e-12,1;DOID:1798,8.64e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.45e-34!14;UBERON:0000158!9.45e-34!14;UBERON:0003124!5.52e-24!7;UBERON:0000478!6.71e-22!24;UBERON:0001987!2.01e-14!4;UBERON:0004340!2.01e-14!4;UBERON:0000305!1.92e-12!7;UBERON:0004923!1.69e-11!57;UBERON:0000476!2.65e-11!3;UBERON:0000920!2.65e-11!3;UBERON:0004871!7.72e-11!8;UBERON:0000995!2.97e-07!21;UBERON:0005795!7.10e-07!22;UBERON:0003975!7.10e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.00e-37;10!UBERON:0000158;2.00e-37;10!UBERON:0000478;2.63e-34;24!UBERON:0000305;2.54e-24;7!UBERON:0003124;4.93e-15;3!UBERON:0000920;4.93e-15;3!UBERON:0001987;1.55e-11;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.33e-47,14;UBERON:0000158,5.33e-47,14;UBERON:0000478,2.74e-34,24;UBERON:0000305,2.62e-24,7;UBERON:0003124,2.62e-24,7;UBERON:0004871,2.59e-21,8;UBERON:0000920,5.30e-15,3;UBERON:0001987,1.55e-11,4;UBERON:0004340,1.55e-11,4;UBERON:0004923,2.74e-09,66;UBERON:0000995,2.96e-08,21;UBERON:0005795,6.91e-08,22;UBERON:0003975,6.91e-08,22;UBERON:0004175,5.87e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,11.6504807657348,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,1.80479845162965,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.40107902686839,1.78178808499583,25.8014989763355,0,0,0,0,0,0,0,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,5.99466151408956,3.59030577639089,7.60531603454057,4.46601623624687,0.641183153813036,3.19820865611181,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,9.02510639342681,0.783939179315021,1.56706571844725,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,1.95551382734803,0.0801588202515337,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,6.7890860169657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0,0,0,0,0,0,0,0,2.88097363929565,0,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,1.5966426629275,0,0,0,0,0,0,0,0,1.12108865325516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0.639701945702943,0,0,0,0,0,0,0,0,0.336760265072938,0,0.332660356546013,0.0814032686109745,0,0,0,4.69281884806909,0,0,0,0,0 | |||
|short_description=p16@GPC1 | |||
}} |
Revision as of 09:34, 21 January 2014
Short description: | p16@GPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_GPC1_5end |
Coexpression cluster: | C4209_amniotic_endometrioid_Placental_pancreatic_chorionic_heart_placenta |
Association with transcript: | 86bp_to_ENST00000495100_5end |
EntrezGene: | GPC1 |
HGNC: | 4449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.47e-26 | 19 |
amnion mesenchymal stem cell | 8.97e-20 | 5 |
chorionic membrane mesenchymal stem cell | 5.30e-15 | 3 |
germ line cell | 2.65e-14 | 7 |
germ cell | 2.65e-14 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.33e-47 | 14 |
membranous layer | 5.33e-47 | 14 |
extraembryonic structure | 2.74e-34 | 24 |
amnion | 2.62e-24 | 7 |
chorion | 2.62e-24 | 7 |
somatic layer of lateral plate mesoderm | 2.59e-21 | 8 |
egg chorion | 5.30e-15 | 3 |
placenta | 1.55e-11 | 4 |
allantois | 1.55e-11 | 4 |
organ component layer | 2.74e-09 | 66 |
uterus | 2.96e-08 | 21 |
embryonic uterus | 6.91e-08 | 22 |
internal female genitalia | 6.91e-08 | 22 |
internal genitalia | 5.87e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 4.53e-12 | 1 |
ischemia | 4.53e-12 | 1 |
extrinsic cardiomyopathy | 4.53e-12 | 1 |
myocardial ischemia | 4.53e-12 | 1 |
myocardial infarction | 4.53e-12 | 1 |
islet cell tumor | 8.64e-12 | 1 |
endocrine pancreas cancer | 8.64e-12 | 1 |
pancreatic endocrine carcinoma | 8.64e-12 | 1 |