FFCP PHASE1:Hg19::chr3:147115400..147115411,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C711 | |||
|description=CAGE_peak_at_chr3:147115400..147115411,+ | |||
|id=chr3:147115400..147115411,+ | |||
|ontology_enrichment_celltype=CL:0002603!2.10e-12!3;CL:0000064!4.11e-12!3;CL:0005012!4.11e-12!3;CL:0000067!4.11e-12!3;CL:0002304!4.11e-12!3;CL:0000708!7.13e-12!3;CL:0002590!1.83e-11!3;CL:0002559!1.95e-09!4;CL:0002575!1.24e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002603;9.27e-50;3!CL:0000346;6.43e-23;3!CL:1000428;6.43e-23;3!CL:0000128;8.41e-22;7!CL:0000126;8.41e-22;7!CL:0000127;8.41e-22;7!CL:0002559;3.59e-14;5!CL:0002575;1.38e-09;2!CL:0000243;2.32e-09;15!CL:0000125;2.32e-09;15!CL:0000095;1.96e-08;17!CL:0000064;8.38e-07;3!CL:0000067;8.38e-07;3!CL:0005012;8.38e-07;3!CL:0002304;8.38e-07;3!CL:0000708;8.38e-07;3!CL:0002590;8.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,2.33e-49,3;CL:0000346,4.61e-23,3;CL:1000428,4.61e-23,3;CL:0000128,1.25e-21,7;CL:0000126,1.25e-21,7;CL:0000127,1.25e-21,7;CL:0002453,1.25e-21,7;CL:0002559,2.95e-14,5;CL:0000333,1.27e-09,41;CL:0000133,1.55e-09,59;CL:0002575,1.71e-09,2;CL:0000243,2.72e-09,15;CL:0000125,2.72e-09,15;CL:0000030,2.72e-09,15;CL:0000339,2.72e-09,15;CL:0000095,2.25e-08,17;CL:0000123,2.25e-08,17;CL:0000221,8.09e-08,72;CL:0000708,6.88e-07,3;CL:0000064,8.15e-07,3;CL:0000067,8.15e-07,3;CL:0005012,8.15e-07,3;CL:0002304,8.15e-07,3;CL:0002590,8.62e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.23e-50;3!CL:0000339;2.32e-09;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!2.49e-39!15;UBERON:0003057!2.49e-39!15;UBERON:0004733!7.54e-36!12;UBERON:0002028!7.54e-36!12;UBERON:0007277!7.54e-36!12;UBERON:0004732!6.70e-33!13;UBERON:0005743!3.29e-27!86;UBERON:0001017!9.46e-27!82;UBERON:0002680!3.54e-26!9;UBERON:0001895!3.54e-26!9;UBERON:0010092!3.54e-26!9;UBERON:0003075!1.14e-25!86;UBERON:0007284!1.14e-25!86;UBERON:0002346!3.17e-24!90;UBERON:0000073!5.35e-24!94;UBERON:0001016!5.35e-24!94;UBERON:0002616!5.50e-24!59;UBERON:0002037!2.28e-23!6;UBERON:0006215!2.28e-23!6;UBERON:0004121!2.19e-21!169;UBERON:0000955!2.20e-21!69;UBERON:0006238!2.20e-21!69;UBERON:0000924!1.09e-20!173;UBERON:0006601!1.09e-20!173;UBERON:0001049!2.84e-20!57;UBERON:0005068!2.84e-20!57;UBERON:0006241!2.84e-20!57;UBERON:0007135!2.84e-20!57;UBERON:0002200!4.65e-20!11;UBERON:0006876!4.65e-20!11;UBERON:0000033!1.34e-18!123;UBERON:0000153!2.10e-17!129;UBERON:0007811!2.10e-17!129;UBERON:0000488!4.53e-15!4;UBERON:0000119!3.22e-13!312;UBERON:0001778!4.11e-12!3;UBERON:0001775!4.11e-12!3;UBERON:0003210!7.13e-12!3;UBERON:0005284!7.81e-12!5;UBERON:0001896!2.04e-11!3;UBERON:0005290!2.04e-11!3;UBERON:0010096!2.04e-11!3;UBERON:0007625!2.66e-11!11;UBERON:0002298!5.84e-11!8;UBERON:0000483!8.61e-11!309;UBERON:0005085!1.14e-10!29;UBERON:0002203!4.61e-10!6;UBERON:0001768!4.61e-10!6;UBERON:0002073!1.95e-09!4;UBERON:0005086!1.95e-09!4;UBERON:0000475!5.24e-09!365;UBERON:0001801!9.82e-09!14;UBERON:0000369!1.88e-08!4;UBERON:0002435!1.88e-08!4;UBERON:0000204!1.88e-08!4;UBERON:0010082!1.88e-08!4;UBERON:0000019!2.86e-08!19;UBERON:0000047!2.86e-08!19;UBERON:0004088!2.86e-08!19;UBERON:0003072!2.86e-08!19;UBERON:0003071!2.86e-08!19;UBERON:0004128!2.86e-08!19;UBERON:0003056!4.53e-08!61;UBERON:0000063!6.90e-08!97;UBERON:0000970!8.31e-08!20;UBERON:0002104!2.18e-07!21;UBERON:0001456!2.18e-07!21;UBERON:0007023!9.78e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.32e-98;6!UBERON:0002680;8.30e-66;9!UBERON:0001895;8.30e-66;9!UBERON:0004733;2.17e-49;12!UBERON:0002028;2.17e-49;12!UBERON:0004732;1.34e-45;13!UBERON:0000412;6.43e-23;3!UBERON:0001992;6.43e-23;3!UBERON:0002073;3.59e-14;5!UBERON:0002067;2.75e-08;9!UBERON:0006876;6.16e-07;11!UBERON:0003210;8.38e-07;3!UBERON:0001778;8.38e-07;3!UBERON:0001775;8.38e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.61e-98,6;UBERON:0006215,2.61e-98,6;UBERON:0002680,1.30e-65,9;UBERON:0001895,1.30e-65,9;UBERON:0010092,1.30e-65,9;UBERON:0004733,3.05e-49,12;UBERON:0002028,3.05e-49,12;UBERON:0007277,3.05e-49,12;UBERON:0004732,1.84e-45,13;UBERON:0003076,2.07e-39,15;UBERON:0003057,2.07e-39,15;UBERON:0000412,4.61e-23,3;UBERON:0001992,4.61e-23,3;UBERON:0002073,2.95e-14,5;UBERON:0005086,2.95e-14,5;UBERON:0010371,4.29e-12,104;UBERON:0000955,3.28e-11,68;UBERON:0006238,3.28e-11,68;UBERON:0000073,7.08e-11,53;UBERON:0002616,7.08e-11,53;UBERON:0001049,2.71e-10,56;UBERON:0005068,2.71e-10,56;UBERON:0006241,2.71e-10,56;UBERON:0007135,2.71e-10,56;UBERON:0003075,2.15e-09,82;UBERON:0007284,2.15e-09,82;UBERON:0010314,2.17e-09,132;UBERON:0001017,2.18e-09,81;UBERON:0002346,6.09e-09,86;UBERON:0004121,1.06e-08,171;UBERON:0000924,1.06e-08,171;UBERON:0006601,1.06e-08,171;UBERON:0001016,2.00e-08,89;UBERON:0002067,2.46e-08,9;UBERON:0004016,2.46e-08,9;UBERON:0010083,2.46e-08,9;UBERON:0001048,1.14e-07,160;UBERON:0006876,6.16e-07,11;UBERON:0003210,6.88e-07,3;UBERON:0001778,8.15e-07,3;UBERON:0001775,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23121058076788,1.22400414746552,1.56727360739044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51255707462509,0.665188192387692,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605429710579726,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,1.92972281457866,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.695582429850461,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79409734952577,0.87192013766656,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,1.37060810223918,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0.413509717453592,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0.291604613383254,0,0,0.482385754501632,1.52581736317083,3.64911557773041,3.54657142744257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0.776503360757966,0.18628920882415,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0.135939465953663,0,0,0,0,0.628462359664008,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:147115400..147115411,+ | |||
}} |
Revision as of 21:50, 21 January 2014
Short description: | p@chr3:147115400..147115411, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147115400..147115411, + |
Coexpression cluster: | C711_cerebellum_Pericytes_Fibroblast_Meningeal_spinal_Astrocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 2.33e-49 | 3 |
hair follicle dermal papilla cell | 4.61e-23 | 3 |
stem cell of epidermis | 4.61e-23 | 3 |
oligodendrocyte | 1.25e-21 | 7 |
macroglial cell | 1.25e-21 | 7 |
astrocyte | 1.25e-21 | 7 |
oligodendrocyte precursor cell | 1.25e-21 | 7 |
hair follicle cell | 2.95e-14 | 5 |
migratory neural crest cell | 1.27e-09 | 41 |
neurectodermal cell | 1.55e-09 | 59 |
central nervous system pericyte | 1.71e-09 | 2 |
glial cell (sensu Vertebrata) | 2.72e-09 | 15 |
glial cell | 2.72e-09 | 15 |
glioblast | 2.72e-09 | 15 |
glioblast (sensu Vertebrata) | 2.72e-09 | 15 |
neuron associated cell | 2.25e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 2.25e-08 | 17 |
ectodermal cell | 8.09e-08 | 72 |
leptomeningeal cell | 6.88e-07 | 3 |
ciliated cell | 8.15e-07 | 3 |
ciliated epithelial cell | 8.15e-07 | 3 |
multi-ciliated epithelial cell | 8.15e-07 | 3 |
non-pigmented ciliary epithelial cell | 8.15e-07 | 3 |
smooth muscle cell of the brain vasculature | 8.62e-07 | 3 |