FFCP PHASE1:Hg19::chr4:54457666..54457698,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84708 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TBB1 | |||
|association_with_transcript=25bp_to_NM_001126328,uc003hag.3_5end | |||
|description=CAGE_peak_4_at_LNX1_5end | |||
|id=chr4:54457666..54457698,- | |||
|ontology_enrichment_celltype=CL:0000066!2.93e-07!254;CL:0000039!3.75e-07!7;CL:0000586!3.75e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;8.51e-07;7!CL:0000586;8.51e-07;7 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006595;6.63e-07;86 | |||
|ontology_enrichment_disease=DOID:305!6.54e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.94e-09,106;DOID:0050686,5.79e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.23e-14!169;UBERON:0000925!9.23e-14!169;UBERON:0006595!9.23e-14!169;UBERON:0004921!3.18e-13!129;UBERON:0004185!3.18e-13!129;UBERON:0001007!3.41e-13!155;UBERON:0001555!3.41e-13!155;UBERON:0007026!3.41e-13!155;UBERON:0000466!3.15e-10!126;UBERON:0000077!1.82e-09!130;UBERON:0000464!1.91e-09!104;UBERON:0003135!2.54e-08!11;UBERON:0000160!2.80e-07!27;UBERON:0002553!3.57e-07!70;UBERON:0005409!4.64e-07!35;UBERON:0003101!6.35e-07!22;UBERON:0000079!6.35e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.27e-15;33!UBERON:0005409;4.58e-10;22!UBERON:0000160;1.57e-09;17!UBERON:0003135;2.76e-08;11!UBERON:0006947;3.26e-07;3!UBERON:0004054;3.26e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.79e-10,118;UBERON:0001007,1.22e-09,145;UBERON:0001555,1.22e-09,145;UBERON:0007026,1.22e-09,145;UBERON:0000160,1.58e-09,17;UBERON:0004119,2.82e-09,160;UBERON:0000925,2.82e-09,160;UBERON:0006595,2.82e-09,160;UBERON:0005409,1.14e-08,25;UBERON:0003135,3.24e-08,11;UBERON:0006947,2.87e-07,3;UBERON:0004054,2.87e-07,3;UBERON:0002553,4.27e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.130979075497713,0.364295288292542,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,1.53316637465883,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,0.397589304964456,1.51052125730374,2.07322110030741,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,0.590789906681404,0,1.10689594688802,0.343135620597051,0.109750285408626,0,0,0.370353780634118,0,0,0,0.579652024875384,0,0,0,0,0,3.43394464837949,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966875596732978,0.200506470303285,0.184161977871793,0,0,0,0.451199612907412,1.30926073077505,0,0,2.21658420675039,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0.447749509444357,0,0,0.256450125116389,1.31205858279882,0.325378394664303,1.95777922130672,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,1.08890984861323,1.97701981631236,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0.540031437238115,0,0,0,2.20536194382929,0,2.59684583357601,0,0,0,0,1.05836791361941,0,1.68478306868075,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,4.22961015263549,1.12284324244932,0,0,0.557216921387392,0,0.95497793895076,0,0.307160702099232,0,0,0,0,0,0.597743964753209,1.10513566212459,5.79445320064835,0,3.93871377475422,0,0.359473404589307,0.537063524026827,0,1.1837208676432,0,0,0,0.0927680981618513,0,1.5625665665114,2.18649999990489,1.44999915086959,1.137934482855,2.54253650292766,0.709163045303809,0,0,0,0,0,0,0,0,0,0,2.64905114129346,0.307801034015188,0,0.922255617552241,1.25660702173681,0.977826347298073,0.31900115973192,0.366390373607449,0.533034776018635,0,0,3.8228686837036,0.902382642468723,2.54881294613061,0.335643173951685,1.51802986179348,6.6753363171759,0,0.163232808159148,1.41353071433941,0,3.98104772431402,2.21143911258348,3.66618086960175,0,0,0,0.067401132980677,0,0.234264445725339,2.73682183823499,1.76098157038881,0,3.55125962564451,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0.489961987071888,0,1.57254001417827,0,0,0,0,3.9765496760252,0,0.225980740780532,0,0,0,2.15106521008283,0.160317640503067,1.49417096317547,0,0.864542502924636,0,4.28987494654911,0,0,0.942776138467182,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.599037001496973,0,0,0.201550417460179,0,1.16495949527454,0,0,0,0.393709926058995,0.0846733320657845,0,0,0.643012593860077,0.825236619583403,0.415440338029185,0,1.5476039091159,0,2.34804281319486,1.65491985328316,2.62272940674991,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,1.17241786942466,1.32506888912221,0,0,0,1.40963004463334,0.533937062838473,0.471612915298998,0.828478110694391,0,0,10.1087856656144,1.27668251554036,0,0,0,0,5.18278517625773,0,0,0,0,0,0,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.490696182767533,0,0,0,0,0,0.172214979660816,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,5.20487517008272,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.785181748008205,0.471878893390961,0,0.346576998451015,0,0,0,0.0752103283492573,0,5.47059807863165,1.57144016688853,0,0.443568258651136,0,0,0,0,0,1.64477330057155,0.992422356778588,0,4.59944739502543,0,0,3.64179362541979,1.82129753081038,3.90290428715611,0.115233987555779,0,0,0,0,0.667388411352415,1.41287567130925,0,0.840816489941367,1.82631744101899,0,0,0,0,0,0,0,0.207216164163037,0,1.38251932362818,8.17431981758527,0,0,4.23387050190929,2.97838929107265,0,0,1.00669888618013,1.96300467230486,1.34109717480496,0,0,0,0.971421986118279,4.67878926924211,0,0,3.50132854320776,0,3.92503393273351,3.24131464053368,1.96703604453562,6.1141248526998,0,1.88541237681301,0,0,0,0,0,0,0,0.892769693028288,0,1.36410323371586,1.46067277649303,6.42220996766357,0,0,0.0679914901909147,0,4.7612415646386,0,0,0,0.378499274505237,2.18531143927391,0,1.1218771271618,1.60330443159336,1.19463369395298,3.76061308938563,0.227336094654718,0.267964130156178,0.829169439458779,0.103432995861895,2.55880778281177,2.14257988317366,0.516711278688049,1.30356900021302,0.112131862580613,3.4369465470209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| |||
|short_description=p4@LNX1 | |||
}} |
Revision as of 01:03, 22 January 2014
Short description: | p4@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LNX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_NM_001126328, uc003hag.3_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | Q8TBB1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.79e-10 | 118 |
digestive system | 1.22e-09 | 145 |
digestive tract | 1.22e-09 | 145 |
primitive gut | 1.22e-09 | 145 |
intestine | 1.58e-09 | 17 |
endoderm-derived structure | 2.82e-09 | 160 |
endoderm | 2.82e-09 | 160 |
presumptive endoderm | 2.82e-09 | 160 |
gastrointestinal system | 1.14e-08 | 25 |
male reproductive organ | 3.24e-08 | 11 |
male genital duct | 2.87e-07 | 3 |
internal male genitalia | 2.87e-07 | 3 |
anatomical cavity | 4.27e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.94e-09 | 106 |
organ system cancer | 5.79e-07 | 137 |