FFCP PHASE1:Hg19::chr5:52096002..52096016,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8829 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRX2 | |||
|association_with_transcript=4bp_to_AF139828_5end | |||
|description=CAGE_peak_4_at_PELO_5end | |||
|id=chr5:52096002..52096016,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.84e-19!679;CL:0000004!2.84e-19!679;CL:0000255!2.84e-19!679;CL:0000012!1.22e-18!682;CL:0000192!1.80e-16!42;CL:0000514!1.80e-16!42;CL:0000048!3.66e-16!430;CL:0000034!6.87e-15!444;CL:0000723!8.03e-15!436;CL:0000183!3.52e-14!59;CL:0000144!5.08e-14!625;CL:0000680!5.35e-13!57;CL:0000056!5.35e-13!57;CL:0000355!5.35e-13!57;CL:0000187!1.07e-12!54;CL:0000359!2.78e-12!32;CL:0000393!1.60e-11!60;CL:0000211!1.60e-11!60;CL:0002371!2.93e-11!591;CL:0000055!4.68e-11!180;CL:0000860!3.69e-10!45;CL:0002057!1.93e-09!42;CL:0000003!2.29e-09!722;CL:0002194!2.90e-08!63;CL:0000576!2.90e-08!63;CL:0000040!2.90e-08!63;CL:0000559!2.90e-08!63;CL:0002009!9.34e-08!65;CL:0000134!2.40e-07!358;CL:0000222!4.38e-07!119;CL:0002320!4.72e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-14;33!CL:0002057;2.73e-14;33!CL:0000192;3.55e-12;43!CL:0000359;4.94e-12;32!CL:0000473;1.06e-10;39!CL:0000234;1.06e-10;39!CL:0000187;7.72e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.27e-17,43;CL:0000514,1.27e-17,43;CL:0000048,2.21e-16,427;CL:0000034,4.21e-15,441;CL:0000723,6.36e-15,433;CL:0000680,2.24e-14,58;CL:0000056,2.24e-14,58;CL:0000355,2.24e-14,58;CL:0000187,4.74e-14,55;CL:0000359,3.54e-13,32;CL:0000393,2.20e-12,61;CL:0000211,2.20e-12,61;CL:0000860,5.92e-09,42;CL:0002057,5.92e-09,42;CL:0000473,3.25e-08,48;CL:0000234,3.25e-08,48;CL:0000134,3.49e-07,354;CL:0002320,7.53e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000514;3.55e-12;43!CL:0000355;1.24e-07;58!CL:0002057;2.21e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.46e-13!167;UBERON:0000926!4.90e-12!448;UBERON:0004120!4.90e-12!448;UBERON:0006603!4.90e-12!448;UBERON:0001134!4.21e-11!61;UBERON:0002036!4.21e-11!61;UBERON:0003082!4.21e-11!61;UBERON:0004290!8.01e-11!70;UBERON:0000914!5.66e-10!83;UBERON:0002329!5.66e-10!83;UBERON:0003077!5.66e-10!83;UBERON:0003059!5.66e-10!83;UBERON:0007282!5.66e-10!83;UBERON:0009618!5.66e-10!83;UBERON:0007285!5.66e-10!83;UBERON:0002385!7.66e-10!63;UBERON:0001015!7.66e-10!63;UBERON:0000383!7.66e-10!63;UBERON:0000490!1.85e-09!138;UBERON:0005256!2.29e-08!143;UBERON:0001637!2.38e-08!42;UBERON:0003509!2.38e-08!42;UBERON:0004572!2.38e-08!42;UBERON:0000486!2.48e-08!82;UBERON:0003081!9.44e-08!216;UBERON:0004573!2.17e-07!33;UBERON:0004571!2.17e-07!33;UBERON:0002100!2.71e-07!216;UBERON:0002384!6.15e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,6.51e-13,122;UBERON:0001134,1.37e-12,62;UBERON:0002036,1.37e-12,62;UBERON:0003082,1.37e-12,62;UBERON:0002329,3.53e-12,71;UBERON:0003059,3.53e-12,71;UBERON:0007282,3.53e-12,71;UBERON:0004290,3.53e-12,71;UBERON:0009618,3.53e-12,71;UBERON:0007524,5.05e-12,73;UBERON:0007503,9.14e-12,78;UBERON:0003077,1.14e-11,72;UBERON:0007285,1.14e-11,72;UBERON:0002385,1.78e-11,64;UBERON:0001015,1.78e-11,64;UBERON:0000383,1.78e-11,64;UBERON:0002204,3.00e-11,167;UBERON:0000926,3.12e-11,315;UBERON:0004120,3.12e-11,315;UBERON:0006603,3.12e-11,315;UBERON:0000490,1.23e-10,148;UBERON:0000486,3.34e-09,83;UBERON:0002100,1.37e-08,199;UBERON:0003104,1.45e-08,160;UBERON:0009142,1.45e-08,160;UBERON:0001637,7.28e-08,42;UBERON:0003509,7.28e-08,42;UBERON:0004572,7.28e-08,42;UBERON:0003081,7.65e-08,203;UBERON:0004573,3.18e-07,33;UBERON:0004571,3.18e-07,33;UBERON:0002384,9.86e-07,371 | |||
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| |||
|short_description=p4@PELO | |||
}} |
Revision as of 05:21, 22 January 2014
Short description: | p4@PELO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PELO_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_AF139828_5end |
EntrezGene: | PELO |
HGNC: | 8829 |
UniProt: | Q9BRX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.27e-17 | 43 |
smooth muscle myoblast | 1.27e-17 | 43 |
multi fate stem cell | 2.21e-16 | 427 |
stem cell | 4.21e-15 | 441 |
somatic stem cell | 6.36e-15 | 433 |
muscle precursor cell | 2.24e-14 | 58 |
myoblast | 2.24e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.24e-14 | 58 |
muscle cell | 4.74e-14 | 55 |
vascular associated smooth muscle cell | 3.54e-13 | 32 |
electrically responsive cell | 2.20e-12 | 61 |
electrically active cell | 2.20e-12 | 61 |
classical monocyte | 5.92e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.92e-09 | 42 |
defensive cell | 3.25e-08 | 48 |
phagocyte | 3.25e-08 | 48 |
mesenchymal cell | 3.49e-07 | 354 |
connective tissue cell | 7.53e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 6.51e-13 | 122 |
skeletal muscle tissue | 1.37e-12 | 62 |
striated muscle tissue | 1.37e-12 | 62 |
myotome | 1.37e-12 | 62 |
somite | 3.53e-12 | 71 |
presomitic mesoderm | 3.53e-12 | 71 |
presumptive segmental plate | 3.53e-12 | 71 |
dermomyotome | 3.53e-12 | 71 |
trunk paraxial mesoderm | 3.53e-12 | 71 |
dense mesenchyme tissue | 5.05e-12 | 73 |
epithelial vesicle | 9.14e-12 | 78 |
paraxial mesoderm | 1.14e-11 | 72 |
presumptive paraxial mesoderm | 1.14e-11 | 72 |
muscle tissue | 1.78e-11 | 64 |
musculature | 1.78e-11 | 64 |
musculature of body | 1.78e-11 | 64 |
musculoskeletal system | 3.00e-11 | 167 |
mesoderm | 3.12e-11 | 315 |
mesoderm-derived structure | 3.12e-11 | 315 |
presumptive mesoderm | 3.12e-11 | 315 |
unilaminar epithelium | 1.23e-10 | 148 |
multilaminar epithelium | 3.34e-09 | 83 |
trunk | 1.37e-08 | 199 |
mesenchyme | 1.45e-08 | 160 |
entire embryonic mesenchyme | 1.45e-08 | 160 |
artery | 7.28e-08 | 42 |
arterial blood vessel | 7.28e-08 | 42 |
arterial system | 7.28e-08 | 42 |
lateral plate mesoderm | 7.65e-08 | 203 |
systemic artery | 3.18e-07 | 33 |
systemic arterial system | 3.18e-07 | 33 |
connective tissue | 9.86e-07 | 371 |