FFCP PHASE1:Hg19::chr5:121412802..121412811,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc011cwk.1_5end | |||
|coexpression_cluster_id=C4452 | |||
|description=CAGE_peak_12_at_LOX_5end | |||
|id=chr5:121412802..121412811,- | |||
|ontology_enrichment_celltype=CL:0000055!6.89e-34!180;CL:0000057!7.31e-26!75;CL:0000222!1.17e-14!119;CL:0000144!6.85e-13!625;CL:0002371!6.22e-12!591;CL:0002620!1.04e-11!23;CL:0000548!2.59e-10!679;CL:0000004!2.59e-10!679;CL:0000255!2.59e-10!679;CL:0002139!2.79e-10!24;CL:0000012!5.78e-10!682;CL:0000220!2.28e-09!246;CL:0002321!4.49e-09!248;CL:0000680!8.65e-09!57;CL:0000056!8.65e-09!57;CL:0000355!8.65e-09!57;CL:0002334!1.46e-08!12;CL:0000048!2.59e-08!430;CL:0000187!3.44e-08!54;CL:0000359!4.06e-08!32;CL:0000723!6.66e-08!436;CL:0000213!1.62e-07!57;CL:0000215!1.62e-07!57;CL:0000115!2.69e-07!35;CL:0000183!2.86e-07!59;CL:0000034!4.40e-07!444;CL:0000393!5.08e-07!60;CL:0000211!5.08e-07!60;CL:0000192!6.33e-07!42;CL:0000514!6.33e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.59e-22;23!CL:0000057;1.20e-10;73!CL:0000359;2.19e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,6.74e-22,23;CL:0000057,1.14e-19,76;CL:0000048,5.97e-08,427;CL:0000359,8.85e-08,32;CL:0000723,1.17e-07,433;CL:0000034,2.80e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.08e-09;5!DOID:450;7.08e-09;5!DOID:66;7.08e-09;5!DOID:423;7.08e-09;5!DOID:0080000;7.08e-09;5!DOID:11722;7.08e-09;5!DOID:3350;9.39e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.18e-09,5;DOID:450,5.18e-09,5;DOID:66,5.18e-09,5;DOID:423,5.18e-09,5;DOID:0080000,5.18e-09,5;DOID:11722,5.18e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.52e-21!79;UBERON:0007798!2.52e-21!79;UBERON:0000055!2.86e-16!69;UBERON:0004535!2.37e-15!110;UBERON:0001009!2.29e-14!113;UBERON:0004872!2.31e-13!84;UBERON:0001981!3.01e-13!60;UBERON:0007500!3.01e-13!60;UBERON:0004537!3.01e-13!60;UBERON:0006965!3.01e-13!60;UBERON:0000490!7.24e-11!138;UBERON:0001637!1.61e-09!42;UBERON:0003509!1.61e-09!42;UBERON:0004572!1.61e-09!42;UBERON:0000914!3.26e-09!83;UBERON:0002329!3.26e-09!83;UBERON:0003077!3.26e-09!83;UBERON:0003059!3.26e-09!83;UBERON:0007282!3.26e-09!83;UBERON:0009618!3.26e-09!83;UBERON:0007285!3.26e-09!83;UBERON:0004290!4.55e-09!70;UBERON:0003914!5.06e-08!118;UBERON:0001134!1.62e-07!61;UBERON:0002036!1.62e-07!61;UBERON:0003082!1.62e-07!61;UBERON:0000486!2.47e-07!82;UBERON:0004573!4.03e-07!33;UBERON:0004571!4.03e-07!33;UBERON:0002385!5.88e-07!63;UBERON:0001015!5.88e-07!63;UBERON:0000383!5.88e-07!63;UBERON:0002199!7.46e-07!45;UBERON:0002416!7.46e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0010260;2.46e-13;9!UBERON:0002097;1.51e-12;41!UBERON:0002199;2.83e-09;46!UBERON:0002416;2.83e-09;46!UBERON:0003102;1.00e-08;50!UBERON:0002066;1.45e-08;5!UBERON:0002049;1.26e-07;75!UBERON:0007798;1.26e-07;75!UBERON:0007500;6.80e-07;56!UBERON:0001981;6.80e-07;56!UBERON:0004537;6.80e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.62e-16,41;UBERON:0002199,6.46e-14,46;UBERON:0002416,6.46e-14,46;UBERON:0002049,1.32e-13,78;UBERON:0007798,1.32e-13,78;UBERON:0010260,4.17e-13,9;UBERON:0000055,3.82e-12,68;UBERON:0007500,2.95e-10,59;UBERON:0001981,2.95e-10,59;UBERON:0004537,2.95e-10,59;UBERON:0006965,2.95e-10,59;UBERON:0004535,5.33e-09,109;UBERON:0002066,1.04e-08,5;UBERON:0001009,1.34e-08,112;UBERON:0004872,5.89e-08,83;UBERON:0003102,2.70e-07,99 | |||
|phase1_expression=0.908391896352783,0.642301571672949,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0.123766352960047,0.662794751455832,0,1.20538905604795,0,0,0.984968464614303,0.408001382488506,0.313454721478088,0.286235987131057,0.547497700291537,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.361439152384566,0.50133791063589,0.144846518960824,0,0,0.567208902984407,1.33037638477538,1.66886092816939,0,0,0,0,0,0,0,0,0,0.39752481473341,1.72046919021225,0.694281003215189,0,0,0.275118041940067,0.208994966536811,1.29208379584664,2.13459757612026,4.68608857870538,3.22263453687318,0.760272105718513,1.95249646038536,0.735326160691737,0.81014194788176,1.3394959242612,0.673588117878509,1.12611480483322,0,0,0.549605231791222,0,0,0,0.993943903390637,1.2663051166458,2.78059279707759,0.286836620748814,0.709336764396714,0,2.1349799145941,0.49333509683432,0.622422070799533,0.404132016209064,0,0.302714855289863,0.576175924479999,0.234321431833797,0.624320153660641,0,0.149448680551801,1.17434498643765,1.13311061057692,1.26405726032024,0,0.491337269247072,0.206651562351531,2.37600571456411,0.741800787835671,0,0.718618141816238,0,0,0.277064115484183,0.877955241761676,1.83892677479412,1.20190447125277,1.36118619792025,1.79389635688862,2.13557388818567,0.423863802319124,1.50045548042201,1.23663035086127,1.54584324027377,1.11670113798954,0.337552664482532,2.43592512902997,1.51460264546469,1.01254888506529,0.161646056818812,1.77504796258307,1.10827308050404,1.18692414617341,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0.686271241194102,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.34779121492523,4.10930429825376,0.721832238805369,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,1.23344192779897,0,0.95339771567235,2.45616259939778,0,0.845302752556,1.59562869950922,0,0.257207374262142,0,0,0.57191197463259,0,0,0.977208552881205,0,0.791951872933429,0.301439377059586,0,0.399891964728228,0,0,0,1.91699884393266,1.14861935834114,0,3.18518874668674,0,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,1.50051156317903,0.271265023699736,0.207970861530807,0.892144943985809,0.157702415033935,0.35142424497814,0.300946099727719,2.27407504055985,0,2.65690239414175,1.84369168541703,0.173767228936166,0,0,0,0,0,0,0,0.30239029332968,0.744323423456331,1.07423381301644,0.561320188866147,0.384417447767103,3.58195074346692,0.804269605718038,1.48418066444991,0.771048469013278,0.710246901252508,0.328508624055237,1.03850885836724,0.581051892299796,0.120859449591622,0,0,0.574072240823034,0.546273504020151,0.262248829918848,0,0,0,0,0.316654886678627,0,0,0.863663664408557,0,0.541892875087706,0,0,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,1.6068392984416,0.290012154876366,0.462145851343933,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0.340906509664404,0.356128142586949,0,0.192190067365106,0,0.10115778085555,2.78907329578371,0.94443704049192,0,0.616067160352178,2.12922412126809,0,0.37064843820784,0.715624433709956,0.372158369359667,1.2655176988749,0.953150969619124,0,0,0.636406495851874,1.56989728039846,0.539617372749944,0,0.471249609382746,0.202182481573316,1.58510321173008,0,0,0,0,0.136499911407986,0.424216295861138,0,0.551365343546124,0,0.438450885253763,0,0,1.01455188481352,0.92947049429925,1.40847801266121,1.57752487424457,1.96498082026242,1.07001315444375,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.890469640183247,0,0,0,0,0,0,0,2.48831670129446,0.269605053441981,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0.10893846351899,0.41827123283581,0,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,5.50355303909173,0,0,0,0,0,0,0.685209623233754,0,0,0,0,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0.543616824294456,0.523014231561666,0.713987523454252,0,0,0,0,0.859530882839914,0,0,0.229160424011684,0,0,0,0,0.134366944973453,1.08089965062721,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,2.11200673038813,0,0,0,0,0,0.542999601753713,0.864221491201268,0.979762080328227,0,0,0,0.566560457600628,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0.138348634936231,0.124980407962107,0,0,0.235265819698172,0,0,0.895528817321244,0.233713309847224,0.554805861502613,0.378806010550178,0.754703705257725,0.889811221596536,0.457680136793847,0,0.15543720058278,0.295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| |||
|short_description=p12@LOX | |||
}} |
Revision as of 07:04, 22 January 2014
Short description: | p12@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LOX_5end |
Coexpression cluster: | C4452_Lens_Mesenchymal_osteoclastoma_Preadipocyte_basal_Fibroblast_epithelioid |
Association with transcript: | 0bp_to_uc011cwk.1_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 6.74e-22 | 23 |
fibroblast | 1.14e-19 | 76 |
multi fate stem cell | 5.97e-08 | 427 |
vascular associated smooth muscle cell | 8.85e-08 | 32 |
somatic stem cell | 1.17e-07 | 433 |
stem cell | 2.80e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.62e-16 | 41 |
integument | 6.46e-14 | 46 |
integumental system | 6.46e-14 | 46 |
vasculature | 1.32e-13 | 78 |
vascular system | 1.32e-13 | 78 |
umbilical blood vessel | 4.17e-13 | 9 |
vessel | 3.82e-12 | 68 |
epithelial tube open at both ends | 2.95e-10 | 59 |
blood vessel | 2.95e-10 | 59 |
blood vasculature | 2.95e-10 | 59 |
vascular cord | 2.95e-10 | 59 |
cardiovascular system | 5.33e-09 | 109 |
umbilical vein | 1.04e-08 | 5 |
circulatory system | 1.34e-08 | 112 |
splanchnic layer of lateral plate mesoderm | 5.89e-08 | 83 |
surface structure | 2.70e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.18e-09 | 5 |
myotonic disease | 5.18e-09 | 5 |
muscle tissue disease | 5.18e-09 | 5 |
myopathy | 5.18e-09 | 5 |
muscular disease | 5.18e-09 | 5 |
myotonic dystrophy | 5.18e-09 | 5 |