FFCP PHASE1:Hg19::chr5:133451347..133451358,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6932 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11639 | |||
|TSSclassifier=strong | |||
|UniProt=E5RGJ5 | |||
|association_with_transcript=0bp_to_ENST00000517741,NR_033449,uc003kyx.2_5end | |||
|coexpression_cluster_id=C1225 | |||
|description=CAGE_peak_3_at_TCF7_5end | |||
|id=chr5:133451347..133451358,+ | |||
|ontology_enrichment_celltype=CL:0000084!2.15e-24!25;CL:0000827!2.15e-24!25;CL:0000791!6.84e-24!18;CL:0000789!6.84e-24!18;CL:0002420!6.84e-24!18;CL:0002419!6.84e-24!18;CL:0000790!6.84e-24!18;CL:0000738!6.38e-22!140;CL:0000625!2.43e-17!11;CL:0000838!2.87e-17!52;CL:0002087!3.99e-17!119;CL:0000542!9.22e-17!53;CL:0000051!9.22e-17!53;CL:0000037!1.71e-14!172;CL:0000566!1.71e-14!172;CL:0002031!9.45e-14!124;CL:0000988!9.22e-13!182;CL:0002032!7.57e-12!165;CL:0000837!7.57e-12!165;CL:0000624!6.08e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.16e-44;18!CL:0000789;5.16e-44;18!CL:0002419;5.16e-44;18!CL:0000084;2.00e-42;25!CL:0000625;3.75e-31;11!CL:0000624;2.65e-17;6!CL:0000542;3.19e-12;53!CL:0000226;2.03e-09;3!CL:0000842;2.03e-09;3!CL:0000898;3.11e-09;3!CL:0000623;4.29e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.76e-44,18;CL:0000789,5.76e-44,18;CL:0002420,5.76e-44,18;CL:0002419,5.76e-44,18;CL:0000790,5.76e-44,18;CL:0000084,2.24e-42,25;CL:0000827,2.24e-42,25;CL:0000625,3.75e-31,11;CL:0000838,1.03e-23,52;CL:0000542,3.83e-23,53;CL:0000051,3.83e-23,53;CL:0000738,1.67e-19,136;CL:0002087,9.33e-18,115;CL:0000624,2.97e-17,6;CL:0000037,5.89e-14,168;CL:0002031,5.34e-13,120;CL:0000988,9.08e-13,177;CL:0002032,6.40e-11,161;CL:0000837,6.40e-11,161;CL:0000226,2.06e-09,3;CL:0000842,2.06e-09,3;CL:0000898,3.53e-09,3;CL:0000623,3.94e-09,3;CL:0000825,3.94e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.16e-44;18!CL:0000051;3.19e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.74e-13!15;UBERON:0000179!3.74e-13!15;UBERON:0000463!3.74e-13!15;UBERON:0002390!3.54e-09!102;UBERON:0003061!3.54e-09!102;UBERON:0002193!6.49e-09!112;UBERON:0004177!1.07e-07!7;UBERON:0007023!5.99e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.00e-24;15!UBERON:0000179;2.00e-24;15!UBERON:0000463;2.00e-24;15!UBERON:0002390;4.59e-17;32!UBERON:0002193;4.97e-12;42!UBERON:0004177;1.43e-09;5!UBERON:0005057;1.43e-09;5!UBERON:0002370;1.74e-07;2!UBERON:0005058;1.74e-07;2!UBERON:0009113;1.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.16e-24,15;UBERON:0000179,2.16e-24,15;UBERON:0000463,2.16e-24,15;UBERON:0004177,2.43e-10,7;UBERON:0005057,2.43e-10,7;UBERON:0002193,3.69e-10,108;UBERON:0002390,1.24e-09,98;UBERON:0003061,1.24e-09,98;UBERON:0002370,1.09e-07,4;UBERON:0005058,1.09e-07,4;UBERON:0009113,1.09e-07,4;UBERON:0003295,1.09e-07,4;UBERON:0005562,1.09e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.236132343941038,1.96682138424452,0.383829398097213,1.08371286321253,0,0,0,0,0,0,2.21598163412751,1.80490002723128,3.90619567288533,0,2.91504299417082,0.257575567634187,0.290796477559129,0.377875943688809,0,0,2.05583944010913,0.309706370895104,0.28769239232215,0,0,0,0,0,0,0.272906150057846,0,0,0.641858054152187,0,0,0.199463657621632,0,0,1.13477044938228,0,0.502497330513487,0,0.217188844705117,0.605399502633369,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.764546456250458,0,0.560508562981536,0,47.4070545974338,18.4715058492107,20.9713528979499,0.167186495390678,22.4886363977177,26.9865249268798,17.534405556712,0,2.06224135232386,1.99380505125259,2.43723477388514,0,0.260118695119756,5.26201294731764,4.14525026678773,7.53488022911136,56.7937536910691,52.4380023055838,55.4038276166377,0.339928028092699,21.0771271481057,24.0539211837841,38.2059734949449,29.3080181178169,24.0900877926875,17.1081368000707,31.3196247681767,32.124639399759,23.7368380449457,27.2293839850619,19.7070719261051,20.7654945521474,6.15112450302067,24.475324256193,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.4609538596109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0040301733272,7.76259269494262,7.9572682493444,0,0,0,0,0,1.49801404789436,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.5038747167803,15.5314224589404,11.4198486849685,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0.103041011647722,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,6.08937131078603,6.117097657139,6.26611905891579,12.388052323805,11.9295059194996,6.48473311192717,7.02040868409549,11.8968776444141,0,0,0,0,0,72.3512546853372,4.14508309094938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01223355040328,0,0,0,0,0.0898683511473268,0,0,0.394573622547734,7.18449277040819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,1.83309043480088,0,0,0,0,0.802577647298789,0,0,0,0.242780379534093,0,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.275078873194468,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.533937062838473,0.471612915298998,0,16.8696447416063,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596748666348824,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0.606965604236632,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.231522474323834,0.437119121007915,0,0,0,0,0,0,0,2.6315497034359,4.12530483030894,0.0999411559249289,0,0,0,1.46067277649303,2.75237570042724,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0,0.213233981900981,2.3806443146374,81.6403820327117,65.1163752963549,0,0.0636471582781649,0,0,0.342233301085281,7.81283814969215,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,0,14.6929869321449,0.320568492303233 | |||
|short_description=p3@TCF7 | |||
}} |
Revision as of 07:25, 22 January 2014
Short description: | p3@TCF7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TCF7_5end |
Coexpression cluster: | C1225_thymus_acute_CD4_CD8_Hodgkin_Peripheral_lymph |
Association with transcript: | 0bp_to_ENST00000517741, NR_033449, uc003kyx.2_5end |
EntrezGene: | TCF7 |
HGNC: | 11639 |
UniProt: | E5RGJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.76e-44 | 18 |
alpha-beta T cell | 5.76e-44 | 18 |
immature T cell | 5.76e-44 | 18 |
mature T cell | 5.76e-44 | 18 |
immature alpha-beta T cell | 5.76e-44 | 18 |
T cell | 2.24e-42 | 25 |
pro-T cell | 2.24e-42 | 25 |
CD8-positive, alpha-beta T cell | 3.75e-31 | 11 |
lymphoid lineage restricted progenitor cell | 1.03e-23 | 52 |
lymphocyte | 3.83e-23 | 53 |
common lymphoid progenitor | 3.83e-23 | 53 |
leukocyte | 1.67e-19 | 136 |
nongranular leukocyte | 9.33e-18 | 115 |
CD4-positive, alpha-beta T cell | 2.97e-17 | 6 |
hematopoietic stem cell | 5.89e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 5.34e-13 | 120 |
hematopoietic cell | 9.08e-13 | 177 |
hematopoietic oligopotent progenitor cell | 6.40e-11 | 161 |
hematopoietic multipotent progenitor cell | 6.40e-11 | 161 |
single nucleate cell | 2.06e-09 | 3 |
mononuclear cell | 2.06e-09 | 3 |
naive T cell | 3.53e-09 | 3 |
natural killer cell | 3.94e-09 | 3 |
pro-NK cell | 3.94e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.16e-24 | 15 |
haemolymphatic fluid | 2.16e-24 | 15 |
organism substance | 2.16e-24 | 15 |
hemopoietic organ | 2.43e-10 | 7 |
immune organ | 2.43e-10 | 7 |
hemolymphoid system | 3.69e-10 | 108 |
hematopoietic system | 1.24e-09 | 98 |
blood island | 1.24e-09 | 98 |
thymus | 1.09e-07 | 4 |
hemolymphoid system gland | 1.09e-07 | 4 |
thymic region | 1.09e-07 | 4 |
pharyngeal gland | 1.09e-07 | 4 |
thymus primordium | 1.09e-07 | 4 |