FFCP PHASE1:Hg19::chr6:22146839..22146849,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_uc003ndn.2_5end | |||
|description=CAGE_peak_14_at_LINC00340_5end | |||
|id=chr6:22146839..22146849,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!6.07e-07!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.22e-51!57;UBERON:0005068!1.22e-51!57;UBERON:0006241!1.22e-51!57;UBERON:0007135!1.22e-51!57;UBERON:0001893!1.56e-49!34;UBERON:0002020!3.28e-49!34;UBERON:0003528!3.28e-49!34;UBERON:0001869!6.08e-49!32;UBERON:0002780!4.61e-47!41;UBERON:0001890!4.61e-47!41;UBERON:0006240!4.61e-47!41;UBERON:0002791!5.53e-47!33;UBERON:0002619!3.40e-46!22;UBERON:0003080!8.88e-46!42;UBERON:0002616!1.14e-43!59;UBERON:0001950!3.55e-41!20;UBERON:0000955!1.50e-40!69;UBERON:0006238!1.50e-40!69;UBERON:0000956!3.41e-40!25;UBERON:0000203!3.41e-40!25;UBERON:0001017!1.67e-39!82;UBERON:0000073!1.08e-38!94;UBERON:0001016!1.08e-38!94;UBERON:0005743!3.16e-37!86;UBERON:0002346!2.19e-33!90;UBERON:0003075!2.80e-33!86;UBERON:0007284!2.80e-33!86;UBERON:0003056!2.89e-29!61;UBERON:0000153!9.28e-28!129;UBERON:0007811!9.28e-28!129;UBERON:0007023!3.17e-27!115;UBERON:0000033!4.35e-26!123;UBERON:0000924!1.69e-23!173;UBERON:0006601!1.69e-23!173;UBERON:0004121!5.09e-23!169;UBERON:0000200!3.32e-17!6;UBERON:0002021!7.11e-15!5;UBERON:0001871!1.48e-12!7;UBERON:0002308!1.45e-10!9;UBERON:0000125!1.45e-10!9;UBERON:0000025!2.51e-10!194;UBERON:0004111!6.98e-10!241;UBERON:0001872!8.10e-10!5;UBERON:0000349!1.59e-09!5;UBERON:0000477!2.53e-09!286;UBERON:0002771!3.07e-09!3;UBERON:0000988!5.66e-09!3;UBERON:0000064!6.18e-09!219;UBERON:0002298!2.04e-08!8;UBERON:0003076!5.11e-08!15;UBERON:0003057!5.11e-08!15;UBERON:0002420!1.01e-07!9;UBERON:0007245!1.01e-07!9;UBERON:0010009!1.01e-07!9;UBERON:0010011!1.01e-07!9;UBERON:0000454!1.01e-07!9;UBERON:0000369!3.53e-07!4;UBERON:0002435!3.53e-07!4;UBERON:0000204!3.53e-07!4;UBERON:0010082!3.53e-07!4;UBERON:0001870!4.39e-07!2;UBERON:0001897!6.99e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.59e-24;22!UBERON:0000956;2.51e-21;25!UBERON:0000203;2.51e-21;25!UBERON:0002021;1.62e-18;5!UBERON:0001950;3.40e-17;20!UBERON:0002791;3.97e-16;32!UBERON:0001869;5.55e-16;32!UBERON:0003528;3.26e-14;34!UBERON:0002020;3.26e-14;34!UBERON:0001893;1.93e-13;34!UBERON:0002780;9.48e-13;41!UBERON:0001890;9.48e-13;41!UBERON:0002370;1.56e-12;2!UBERON:0005058;1.56e-12;2!UBERON:0009113;1.56e-12;2!UBERON:0001954;2.59e-12;2!UBERON:0003022;2.59e-12;2!UBERON:0002421;2.59e-12;2!UBERON:0002600;2.59e-12;2!UBERON:0000955;7.68e-08;68!UBERON:0000922;1.70e-07;49!UBERON:0001016;2.34e-07;83!UBERON:0000073;2.77e-07;53!UBERON:0002616;2.77e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,4.27e-24,22;UBERON:0000956,2.36e-21,25;UBERON:0000203,2.36e-21,25;UBERON:0002021,1.77e-18,5;UBERON:0001950,3.33e-17,20;UBERON:0002791,6.94e-17,32;UBERON:0001869,6.94e-17,32;UBERON:0003528,6.19e-16,34;UBERON:0002020,6.19e-16,34;UBERON:0001893,6.19e-16,34;UBERON:0002780,2.56e-13,41;UBERON:0001890,2.56e-13,41;UBERON:0003080,2.56e-13,41;UBERON:0006240,2.56e-13,41;UBERON:0001954,2.32e-12,2;UBERON:0003022,2.32e-12,2;UBERON:0002421,2.32e-12,2;UBERON:0002600,2.32e-12,2;UBERON:0000955,2.27e-11,68;UBERON:0006238,2.27e-11,68;UBERON:0000073,2.13e-10,53;UBERON:0002616,2.13e-10,53;UBERON:0001049,7.36e-10,56;UBERON:0005068,7.36e-10,56;UBERON:0006241,7.36e-10,56;UBERON:0007135,7.36e-10,56;UBERON:0001017,1.38e-09,81;UBERON:0003056,4.48e-09,61;UBERON:0001016,1.22e-08,89;UBERON:0002370,6.50e-07,4;UBERON:0005058,6.50e-07,4;UBERON:0009113,6.50e-07,4;UBERON:0003295,6.50e-07,4;UBERON:0005562,6.50e-07,4;UBERON:0003075,8.39e-07,82;UBERON:0007284,8.39e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355709216742071,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0,0,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443175571691151,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.136203406111576,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0.157054096250234,0.886068179966986,0.244052529803926,0.751145584238999,0.573409195690071,0,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0.352675943690684,0,0.449604575675217,1.41696576325585,0.478901577171454,0.41023272848151,1.51243017733031,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0,0.413373593002368,0.570742291745161,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.679697329768317,0.328863867814245,0,0,0,0.314231179832004,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0.235676547101626,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0.872701380680755,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0.829169439458779,0.310298987585686,0,0,2.19602293442421,0.869046000142011,0,0,0.202117188958219,0.217716747896961,0.342233301085281,0,0,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | |||
|short_description=p14@LINC00340 | |||
}} |
Revision as of 10:25, 22 January 2014
Short description: | p14@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_LINC00340_5end |
Coexpression cluster: | NA |
Association with transcript: | -33bp_to_uc003ndn.2_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 4.27e-24 | 22 |
cerebral cortex | 2.36e-21 | 25 |
pallium | 2.36e-21 | 25 |
occipital lobe | 1.77e-18 | 5 |
neocortex | 3.33e-17 | 20 |
regional part of telencephalon | 6.94e-17 | 32 |
cerebral hemisphere | 6.94e-17 | 32 |
brain grey matter | 6.19e-16 | 34 |
gray matter | 6.19e-16 | 34 |
telencephalon | 6.19e-16 | 34 |
regional part of forebrain | 2.56e-13 | 41 |
forebrain | 2.56e-13 | 41 |
anterior neural tube | 2.56e-13 | 41 |
future forebrain | 2.56e-13 | 41 |
Ammon's horn | 2.32e-12 | 2 |
lobe parts of cerebral cortex | 2.32e-12 | 2 |
hippocampal formation | 2.32e-12 | 2 |
limbic lobe | 2.32e-12 | 2 |
brain | 2.27e-11 | 68 |
future brain | 2.27e-11 | 68 |
regional part of nervous system | 2.13e-10 | 53 |
regional part of brain | 2.13e-10 | 53 |
neural tube | 7.36e-10 | 56 |
neural rod | 7.36e-10 | 56 |
future spinal cord | 7.36e-10 | 56 |
neural keel | 7.36e-10 | 56 |
central nervous system | 1.38e-09 | 81 |
pre-chordal neural plate | 4.48e-09 | 61 |
nervous system | 1.22e-08 | 89 |
thymus | 6.50e-07 | 4 |
hemolymphoid system gland | 6.50e-07 | 4 |
thymic region | 6.50e-07 | 4 |
pharyngeal gland | 6.50e-07 | 4 |
thymus primordium | 6.50e-07 | 4 |
neural plate | 8.39e-07 | 82 |
presumptive neural plate | 8.39e-07 | 82 |